RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 TRAV13-2A0A0B4J235 113 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 A0A0B4J2C4 111 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 PRAC2D3DTV9 90 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 C19orf84I3L1E1 186 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 HMGN4O00479 90 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 NDUFC1O43677 76 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 S100A4P26447 101 aaKnown RBP3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 UBE2AP49459 152 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 ZNF138P52744 262 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 KLKP1Q107X0 134 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 TWIST1Q15672 202 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 CRIP3Q6Q6R5 217 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 SMCR5Q8TEV8 140 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 TAS2R4Q9NYW5 299 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 MRPL35Q9NZE8 188 aaKnown RBP3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 DCHS2Q6V1P9 2916 aa3.45□□□□□ -1.86
CCDC88A-209ENST00000456975 A0A1B0GWA3 101 aa3.45□□□□□ -1.86
CCDC88A-209ENST00000456975 FAM223BA6NKX1 122 aa3.45□□□□□ -1.86
CCDC88A-209ENST00000456975 K7EQD1 137 aa3.45□□□□□ -1.86
CCDC88A-209ENST00000456975 CRIP2P52943 208 aaPredicted RBP3.45□□□□□ -1.86
CCDC88A-209ENST00000456975 GNB1P62873 340 aa3.45□□□□□ -1.86
CCDC88A-209ENST00000456975 SOSTDC1Q6X4U4 206 aa3.45□□□□□ -1.86
CCDC88A-209ENST00000456975 NOTCH2NLQ7Z3S9 236 aa3.45□□□□□ -1.86
CCDC88A-209ENST00000456975 C20orf197Q8N268 126 aa3.45□□□□□ -1.86
CCDC88A-209ENST00000456975 C11orf1Q9H5F2 150 aa3.45□□□□□ -1.86
CCDC88A-209ENST00000456975 KIAA2026Q5HYC2 2103 aa3.45□□□□□ -1.86
CCDC88A-209ENST00000456975 C17orf51A8MQB3 221 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 J3QLW9 94 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 FGF12P61328 243 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 ESRGQ1W209 222 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 FAM229BQ4G0N7 80 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 C18orf65Q6ZTR6 163 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 C11orf52Q96A22 123 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 NABP2Q9BQ15 211 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 TXNDC17Q9BRA2 123 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 NIPBLQ6KC79 2804 aaeCLIP3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 EML6Q6ZMW3 1958 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 NUP214P35658 2090 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 SMIM27A0A1W2PRY6 76 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 C11orf94C9JXX5 98 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 SMIM11AP58511 58 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 C1orf100Q5SVJ3 147 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 NDUFA11Q86Y39 141 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 SLC25A22Q9H936 323 aa3.44□□□□□ -1.86
CCDC88A-209ENST00000456975 RAI1Q7Z5J4 1906 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 CNTRLQ7Z7A1 2325 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 TMEM30CPA0ZSE6 113 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 C9JCJ5 164 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 ATXN8Q156A1 80 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 KRTAP5-3Q6L8H2 238 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 CLEC2BQ92478 149 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 SMR3AQ99954 134 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 TACC2O95359 2948 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 INTS1Q8N201 2190 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 ACANP16112 2415 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 CSPG4Q6UVK1 2322 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 IGKV2D-26A0A0A0MRZ7 120 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 IGKV1-12A0A0C4DH73 117 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 SPINK4O60575 86 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 BCE1O60756 84 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 IGKV1D-12P01611 117 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 PATE2Q6UY27 113 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 KRTAP9-9Q9BYP9 154 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 KRTAP9-4Q9BYQ2 154 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 ZNF702PQ9H963 129 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 OSTCQ9NRP0 149 aa3.43□□□□□ -1.86
CCDC88A-209ENST00000456975 IGHV3OR16-13A0A075B7E8 117 aa3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 TRAV3A0A0B4J244 114 aa3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 FCER1GP30273 86 aa3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 SYCNQ0VAF6 134 aa3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 LINC00242Q5T6M2 205 aa3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 SFTA2Q6UW10 78 aa3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 C2orf82Q6UX34 121 aa3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 SCXQ7RTU7 201 aa3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 FAM215AQ9Y5M1 114 aa3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 FN1P02751 2386 aaKnown RBP3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 ABCA4P78363 2273 aa3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 ZNF469Q96JG9 3925 aaPredicted RBP3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 CTXND1A0A1B0GTU2 59 aa3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 CD28P10747 220 aa3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 IFI27P40305 119 aaPredicted RBP3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 NANOS3P60323 173 aaKnown RBP3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 LINC00269Q8N2A0 174 aa3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 FLNAP21333 2647 aaKnown RBP3.42□□□□□ -1.86
CCDC88A-209ENST00000456975 PCNX3Q9H6A9 2034 aa3.41□□□□□ -1.86
CCDC88A-209ENST00000456975 ARHGAP21Q5T5U3 1957 aa3.41□□□□□ -1.86
CCDC88A-209ENST00000456975 E7EUB6 86 aa3.41□□□□□ -1.86
CCDC88A-209ENST00000456975 ZNF497Q6ZNH5 498 aa3.41□□□□□ -1.86
CCDC88A-209ENST00000456975 RPRMLQ8N4K4 120 aa3.41□□□□□ -1.86
CCDC88A-209ENST00000456975 DAND5Q8N907 189 aa3.41□□□□□ -1.86
CCDC88A-209ENST00000456975 RPL36ALQ969Q0 106 aaKnown RBP3.41□□□□□ -1.86
CCDC88A-209ENST00000456975 ZNF414Q96IQ9 312 aa3.41□□□□□ -1.86
CCDC88A-209ENST00000456975 PLA2G12AQ9BZM1 189 aa3.41□□□□□ -1.86
CCDC88A-209ENST00000456975 IGLV3-9A0A075B6K5 115 aa3.4□□□□□ -1.86
CCDC88A-209ENST00000456975 PLXNB1O43157 2135 aa3.4□□□□□ -1.86
CCDC88A-209ENST00000456975 IGLV2-8P01709 118 aa3.4□□□□□ -1.86
CCDC88A-209ENST00000456975 BSPH1Q075Z2 132 aa3.4□□□□□ -1.86
CCDC88A-209ENST00000456975 KRTAP19-4Q3LI73 84 aa3.4□□□□□ -1.86
CCDC88A-209ENST00000456975 ZNF575Q86XF7 245 aa3.4□□□□□ -1.86
CCDC88A-209ENST00000456975 WFDC6Q9BQY6 131 aa3.4□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 97.7 ms