RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 TNRC6AQ8NDV7 1962 aaKnown RBP12.92□□□□□ -0.34
PTPRF-209ENST00000438120 MP68P56378 58 aa12.92□□□□□ -0.34
PTPRF-209ENST00000438120 HIGD2AQ9BW72 106 aa12.92□□□□□ -0.34
PTPRF-209ENST00000438120 ANKHD1Q8IWZ3 2542 aaKnown RBP12.92□□□□□ -0.34
PTPRF-209ENST00000438120 SPATA25Q9BR10 227 aa12.92□□□□□ -0.34
PTPRF-209ENST00000438120 NCOA6Q14686 2063 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-209ENST00000438120 LRCOL1A6NCL2 159 aa12.91□□□□□ -0.34
PTPRF-209ENST00000438120 ZNF106Q9H2Y7 1883 aaKnown RBP12.91□□□□□ -0.34
PTPRF-209ENST00000438120 TRBV10-2A0A0K0K1G8 114 aa12.91□□□□□ -0.34
PTPRF-209ENST00000438120 K7EQG2 157 aa12.9□□□□□ -0.34
PTPRF-209ENST00000438120 COX7BP24311 80 aa12.9□□□□□ -0.34
PTPRF-209ENST00000438120 CRIP3Q6Q6R5 217 aa12.9□□□□□ -0.34
PTPRF-209ENST00000438120 LRRC75A-AS1Q8N1F1 130 aa12.9□□□□□ -0.34
PTPRF-209ENST00000438120 LINC00574Q9H8X3 128 aa12.9□□□□□ -0.34
PTPRF-209ENST00000438120 ZNF295-AS1Q8N0V1 137 aa12.9□□□□□ -0.34
PTPRF-209ENST00000438120 A0A1B0GXF2 115 aa12.89□□□□□ -0.35
PTPRF-209ENST00000438120 JMJD7-PLA2G4BH0Y9G9 81 aa12.89□□□□□ -0.35
PTPRF-209ENST00000438120 FOXI1Q12951 378 aa12.89□□□□□ -0.35
PTPRF-209ENST00000438120 Q6ZSV7 163 aa12.89□□□□□ -0.35
PTPRF-209ENST00000438120 PROK1P58294 105 aa12.89□□□□□ -0.35
PTPRF-209ENST00000438120 CHCHD10Q8WYQ3 142 aaPredicted RBP12.89□□□□□ -0.35
PTPRF-209ENST00000438120 DEFB131BA0A096LNP1 70 aa12.89□□□□□ -0.35
PTPRF-209ENST00000438120 CRYGDP07320 174 aa12.88□□□□□ -0.35
PTPRF-209ENST00000438120 A0A0J9YXY3 114 aa12.88□□□□□ -0.35
PTPRF-209ENST00000438120 PRR14LQ5THK1 2151 aa12.88□□□□□ -0.35
PTPRF-209ENST00000438120 MIAQ16674 131 aa12.88□□□□□ -0.35
PTPRF-209ENST00000438120 TP73-AS1Q9UF72 201 aa12.88□□□□□ -0.35
PTPRF-209ENST00000438120 TMEM131Q92545 1883 aa12.87□□□□□ -0.35
PTPRF-209ENST00000438120 TMEM256-PLSCR3K7ERE1 68 aa12.87□□□□□ -0.35
PTPRF-209ENST00000438120 IGLC6P0CF74 106 aa12.87□□□□□ -0.35
PTPRF-209ENST00000438120 RNF183Q96D59 192 aa12.87□□□□□ -0.35
PTPRF-209ENST00000438120 B9D2Q9BPU9 175 aa12.87□□□□□ -0.35
PTPRF-209ENST00000438120 CDKN2A-AS1Q9UH64 79 aa12.87□□□□□ -0.35
PTPRF-209ENST00000438120 ZNF843Q8N446 348 aa12.86□□□□□ -0.35
PTPRF-209ENST00000438120 RNASE8Q8TDE3 154 aaKnown RBP12.86□□□□□ -0.35
PTPRF-209ENST00000438120 NEXN-AS1Q8NBZ9 246 aa12.86□□□□□ -0.35
PTPRF-209ENST00000438120 PCDH15Q96QU1 1955 aa12.85□□□□□ -0.35
PTPRF-209ENST00000438120 CRYGBP07316 175 aa12.85□□□□□ -0.35
PTPRF-209ENST00000438120 TCL1BO95988 128 aa12.85□□□□□ -0.35
PTPRF-209ENST00000438120 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-209ENST00000438120 ATOX1O00244 68 aa12.84□□□□□ -0.35
PTPRF-209ENST00000438120 ZFAND3Q9H8U3 227 aa12.84□□□□□ -0.35
PTPRF-209ENST00000438120 LY6LH3BQJ8 138 aa12.83□□□□□ -0.35
PTPRF-209ENST00000438120 SPATA12Q7Z6I5 190 aa12.83□□□□□ -0.35
PTPRF-209ENST00000438120 SORL1Q92673 2214 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 EIF4EBP1Q13541 118 aaPredicted RBP12.83□□□□□ -0.36
PTPRF-209ENST00000438120 C18orf65Q6ZTR6 163 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 Q8N976 141 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 MLST8Q9BVC4 326 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 H3BQ85 93 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 SLPIP03973 132 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 CRIP1P50238 77 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 HILS1P60008 231 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 LYRM9A8MSI8 78 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 LY6G6DO95868 133 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 CFAP126Q5VTH2 177 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 UFSP1Q6NVU6 142 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 WFDC10AQ9H1F0 79 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 XAGE1AQ9HD64 81 aa12.83□□□□□ -0.36
PTPRF-209ENST00000438120 A0A087WZ39 114 aa12.82□□□□□ -0.36
PTPRF-209ENST00000438120 FAM19A1Q7Z5A9 133 aa12.82□□□□□ -0.36
PTPRF-209ENST00000438120 ODF3Q96PU9 254 aa12.82□□□□□ -0.36
PTPRF-209ENST00000438120 C11orf71Q6IPW1 123 aa12.82□□□□□ -0.36
PTPRF-209ENST00000438120 CACNA1AO00555 2505 aa12.82□□□□□ -0.36
PTPRF-209ENST00000438120 H3BT86 120 aa12.81□□□□□ -0.36
PTPRF-209ENST00000438120 PRM2P04554 102 aa12.81□□□□□ -0.36
PTPRF-209ENST00000438120 PIK3CD-AS1Q5SR53 167 aa12.81□□□□□ -0.36
PTPRF-209ENST00000438120 FAM19A5Q7Z5A7 132 aaPredicted RBP12.81□□□□□ -0.36
PTPRF-209ENST00000438120 SPANXCQ9NY87 97 aa12.81□□□□□ -0.36
PTPRF-209ENST00000438120 IGLV4-3A0A075B6K6 122 aa12.8□□□□□ -0.36
PTPRF-209ENST00000438120 SRCAPQ6ZRS2 3230 aa12.8□□□□□ -0.36
PTPRF-209ENST00000438120 DCANP1Q8TF63 244 aa12.8□□□□□ -0.36
PTPRF-209ENST00000438120 HIVEP3Q5T1R4 2406 aa12.8□□□□□ -0.36
PTPRF-209ENST00000438120 SMIM9A6NGZ8 99 aa12.79□□□□□ -0.36
PTPRF-209ENST00000438120 Q6ZS46 218 aa12.79□□□□□ -0.36
PTPRF-209ENST00000438120 BBC3Q96PG8 261 aaPredicted RBP12.79□□□□□ -0.36
PTPRF-209ENST00000438120 MED12LQ86YW9 2145 aa12.79□□□□□ -0.36
PTPRF-209ENST00000438120 IL17DQ8TAD2 202 aa12.79□□□□□ -0.36
PTPRF-209ENST00000438120 KIAA1549LQ6ZVL6 1849 aa12.79□□□□□ -0.36
PTPRF-209ENST00000438120 C14orf177Q52M58 125 aa12.79□□□□□ -0.36
PTPRF-209ENST00000438120 IGLV2-18A0A075B6J9 118 aa12.78□□□□□ -0.36
PTPRF-209ENST00000438120 TRAV23DV6A0A075B6W5 121 aa12.78□□□□□ -0.36
PTPRF-209ENST00000438120 ZNF22P17026 224 aaPredicted RBP12.78□□□□□ -0.36
PTPRF-209ENST00000438120 SCXQ7RTU7 201 aa12.78□□□□□ -0.36
PTPRF-209ENST00000438120 LINC00526Q96FQ7 95 aa12.78□□□□□ -0.36
PTPRF-209ENST00000438120 LTBP2Q14767 1821 aa12.78□□□□□ -0.36
PTPRF-209ENST00000438120 A8MZ25 164 aa12.78□□□□□ -0.36
PTPRF-209ENST00000438120 SMIM20Q8N5G0 67 aa12.78□□□□□ -0.36
PTPRF-209ENST00000438120 IGKV4-1P06312 121 aa12.78□□□□□ -0.36
PTPRF-209ENST00000438120 EBI3Q14213 229 aa12.78□□□□□ -0.36
PTPRF-209ENST00000438120 M0QY20 66 aa12.78□□□□□ -0.36
PTPRF-209ENST00000438120 TRBV6-8A0A0A6YYG3 113 aa12.77□□□□□ -0.36
PTPRF-209ENST00000438120 PCNX3Q9H6A9 2034 aa12.77□□□□□ -0.36
PTPRF-209ENST00000438120 ZNF702PQ9H963 129 aa12.77□□□□□ -0.37
PTPRF-209ENST00000438120 TANC2Q9HCD6 1990 aa12.77□□□□□ -0.37
PTPRF-209ENST00000438120 DSCAMO60469 2012 aa12.77□□□□□ -0.37
PTPRF-209ENST00000438120 TMEM223A0PJW6 202 aa12.77□□□□□ -0.37
PTPRF-209ENST00000438120 PRO3102Q9H379 93 aa12.77□□□□□ -0.37
PTPRF-209ENST00000438120 MBD6Q96DN6 1003 aa12.76□□□□□ -0.37
PTPRF-209ENST00000438120 M0R2N4 97 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 148.4 ms