RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 LINC01619G3V211 115 aa6.15□□□□□ -1.43
CD44-208ENST00000428726 NXPH4O95158 308 aa6.15□□□□□ -1.43
CD44-208ENST00000428726 KMT2BQ9UMN6 2715 aaPredicted RBP6.14□□□□□ -1.43
CD44-208ENST00000428726 A0A096LPF7 62 aa6.14□□□□□ -1.43
CD44-208ENST00000428726 PRADC1Q9BSG0 188 aa6.14□□□□□ -1.43
CD44-208ENST00000428726 LINC00315P59091 139 aa6.14□□□□□ -1.43
CD44-208ENST00000428726 LRRC75A-AS1Q8N1F1 130 aa6.14□□□□□ -1.43
CD44-208ENST00000428726 ZNF625Q96I27 306 aaPredicted RBP6.14□□□□□ -1.43
CD44-208ENST00000428726 TRGV1A0A0A0MS02 117 aa6.13□□□□□ -1.43
CD44-208ENST00000428726 MORN3Q6PF18 240 aaPredicted RBP6.13□□□□□ -1.43
CD44-208ENST00000428726 POM121L12Q8N7R1 296 aa6.13□□□□□ -1.43
CD44-208ENST00000428726 BAALCQ8WXS3 180 aa6.13□□□□□ -1.43
CD44-208ENST00000428726 A0A087WX48 190 aa6.13□□□□□ -1.43
CD44-208ENST00000428726 C11orf86A6NJI1 115 aa6.13□□□□□ -1.43
CD44-208ENST00000428726 TSHBP01222 138 aa6.13□□□□□ -1.43
CD44-208ENST00000428726 SPXQ9BT56 116 aa6.13□□□□□ -1.43
CD44-208ENST00000428726 CCL24O00175 119 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 CRYGDP07320 174 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 RNF152Q8N8N0 203 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 TOMM6Q96B49 74 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 MAP6D1Q9H9H5 199 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 TRAV12-1A0A0B4J245 112 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 H3BMM0 161 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 KIF25-AS1Q9Y6Z4 181 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 TRAV8-3A0A0A6YYJ7 113 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 A0A0J9YXV3 536 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 LOC100131303A0A0U1RQF7 123 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 INAFM1C9JVW0 142 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 PLNP26678 52 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 GAGE13Q4V321 117 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 LINC01006Q8NI28 216 aa6.12□□□□□ -1.43
CD44-208ENST00000428726 H7C1H1 209 aa6.11□□□□□ -1.43
CD44-208ENST00000428726 RPL32P62910 135 aaKnown RBP6.11□□□□□ -1.43
CD44-208ENST00000428726 FOXI2Q6ZQN5 318 aa6.11□□□□□ -1.43
CD44-208ENST00000428726 LINC00482Q8N8I6 264 aa6.11□□□□□ -1.43
CD44-208ENST00000428726 DAND5Q8N907 189 aa6.11□□□□□ -1.43
CD44-208ENST00000428726 KIR2DL4Q99706 377 aa6.11□□□□□ -1.43
CD44-208ENST00000428726 HIGD1BQ9P298 99 aa6.11□□□□□ -1.43
CD44-208ENST00000428726 F8VRH5 84 aa6.11□□□□□ -1.43
CD44-208ENST00000428726 J3QKU1 62 aa6.11□□□□□ -1.43
CD44-208ENST00000428726 SCGB1C2P0DMR2 95 aa6.11□□□□□ -1.43
CD44-208ENST00000428726 DEFB114Q30KQ6 69 aa6.11□□□□□ -1.43
CD44-208ENST00000428726 ODF3L2Q3SX64 289 aa6.11□□□□□ -1.43
CD44-208ENST00000428726 STHQ8IWL8 128 aa6.11□□□□□ -1.43
CD44-208ENST00000428726 MYMXA0A1B0GTQ4 84 aa6.1□□□□□ -1.43
CD44-208ENST00000428726 GAGE12HA6NDE8 117 aa6.1□□□□□ -1.43
CD44-208ENST00000428726 Q6ZTI0 123 aa6.1□□□□□ -1.43
CD44-208ENST00000428726 OR5A1Q8NGJ0 315 aa6.1□□□□□ -1.43
CD44-208ENST00000428726 CLUHP3Q96NS8 147 aa6.1□□□□□ -1.43
CD44-208ENST00000428726 NOP10Q9NPE3 64 aaKnown RBP6.1□□□□□ -1.43
CD44-208ENST00000428726 TSPEAR-AS2P59090 65 aa6.1□□□□□ -1.43
CD44-208ENST00000428726 Q8N2B8 174 aa6.1□□□□□ -1.43
CD44-208ENST00000428726 SYT8Q8NBV8 401 aa6.1□□□□□ -1.43
CD44-208ENST00000428726 SVIPQ8NHG7 77 aa6.1□□□□□ -1.43
CD44-208ENST00000428726 ZNRF2Q8NHG8 242 aa6.1□□□□□ -1.43
CD44-208ENST00000428726 C9orf85Q96MD7 179 aa6.1□□□□□ -1.43
CD44-208ENST00000428726 M0QY20 66 aa6.09□□□□□ -1.43
CD44-208ENST00000428726 GAGE7O76087 117 aa6.09□□□□□ -1.43
CD44-208ENST00000428726 GAGE12FP0CL80 117 aa6.09□□□□□ -1.43
CD44-208ENST00000428726 GAGE12GP0CL81 117 aa6.09□□□□□ -1.43
CD44-208ENST00000428726 GAGE12IP0CL82 117 aa6.09□□□□□ -1.43
CD44-208ENST00000428726 DEFB130BP0DP73 79 aa6.09□□□□□ -1.43
CD44-208ENST00000428726 DEFB130AP0DP74 79 aa6.09□□□□□ -1.43
CD44-208ENST00000428726 SPANXB1Q9NS25 103 aaPredicted RBP6.09□□□□□ -1.43
CD44-208ENST00000428726 TRAV2A0A0B4J234 112 aa6.09□□□□□ -1.43
CD44-208ENST00000428726 NEXN-AS1Q8NBZ9 246 aa6.09□□□□□ -1.43
CD44-208ENST00000428726 GAGE12JA6NER3 117 aa6.09□□□□□ -1.44
CD44-208ENST00000428726 E9PLD3 99 aa6.09□□□□□ -1.44
CD44-208ENST00000428726 VCYO14598 125 aa6.09□□□□□ -1.44
CD44-208ENST00000428726 POLR2KP53803 58 aaKnown RBP6.09□□□□□ -1.44
CD44-208ENST00000428726 GAGE4Q13068 117 aa6.09□□□□□ -1.44
CD44-208ENST00000428726 GAGE5Q13069 117 aa6.09□□□□□ -1.44
CD44-208ENST00000428726 SIGMAR1Q99720 223 aa6.09□□□□□ -1.44
CD44-208ENST00000428726 PRSS2P07478 247 aa6.08□□□□□ -1.44
CD44-208ENST00000428726 TENM3Q9P273 2699 aa6.08□□□□□ -1.44
CD44-208ENST00000428726 TRBV6-5A0A0K0K1A5 114 aa6.08□□□□□ -1.44
CD44-208ENST00000428726 RRN3P1Q2M238 152 aa6.08□□□□□ -1.44
CD44-208ENST00000428726 NFE4Q86UQ8 179 aa6.08□□□□□ -1.44
CD44-208ENST00000428726 TM2D2Q9BX73 214 aa6.08□□□□□ -1.44
CD44-208ENST00000428726 PEMTQ9UBM1 199 aa6.08□□□□□ -1.44
CD44-208ENST00000428726 TNFRSF18Q9Y5U5 241 aa6.08□□□□□ -1.44
CD44-208ENST00000428726 TRGV11A0A075B6L2 103 aa6.07□□□□□ -1.44
CD44-208ENST00000428726 TRAV13-1A0A0B4J241 112 aa6.07□□□□□ -1.44
CD44-208ENST00000428726 KRTAP1-1Q07627 177 aa6.07□□□□□ -1.44
CD44-208ENST00000428726 TRPT1Q86TN4 253 aaKnown RBP6.07□□□□□ -1.44
CD44-208ENST00000428726 CLPSL2Q6UWE3 100 aa6.07□□□□□ -1.44
CD44-208ENST00000428726 TEX29Q8N6K0 151 aa6.07□□□□□ -1.44
CD44-208ENST00000428726 CSMD3Q7Z407 3707 aa6.07□□□□□ -1.44
CD44-208ENST00000428726 TRBV7-3A0A075B6L6 115 aa6.07□□□□□ -1.44
CD44-208ENST00000428726 SPINK8P0C7L1 97 aa6.07□□□□□ -1.44
CD44-208ENST00000428726 Q1RN00 199 aa6.07□□□□□ -1.44
CD44-208ENST00000428726 C4orf3Q8WVX3 66 aa6.07□□□□□ -1.44
CD44-208ENST00000428726 C11orf68Q9H3H3 251 aaKnown RBP6.07□□□□□ -1.44
CD44-208ENST00000428726 TRGV2A0A075B6R0 118 aa6.06□□□□□ -1.44
CD44-208ENST00000428726 TRBV27A0A0K0K1C4 114 aa6.06□□□□□ -1.44
CD44-208ENST00000428726 CIDEAO60543 219 aa6.06□□□□□ -1.44
CD44-208ENST00000428726 TSPAN13O95857 204 aa6.06□□□□□ -1.44
CD44-208ENST00000428726 LY6G6DO95868 133 aa6.06□□□□□ -1.44
CD44-208ENST00000428726 SMCPP49901 116 aaPredicted RBP6.06□□□□□ -1.44
CD44-208ENST00000428726 KRTAP10-3P60369 221 aa6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms