RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 TMEM91Q6ZNR0 172 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 FP248Q71RG6 208 aaPredicted RBP1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 PUSL1Q8N0Z8 303 aaKnown RBP1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 Q8NAQ8 132 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 RASL10AQ92737 203 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 C20orf166-AS1Q96NR2 134 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 PRRT1Q99946 306 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 IGKV2-28A0A075B6P5 120 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 TMEM50AO95807 157 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 IGKV2D-28P01615 120 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 NIT1Q86X76 327 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 DEFB107AQ8IZN7 70 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 C9orf16Q9BUW7 83 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 GABARAPL3Q9BY60 117 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 NAA60Q9H7X0 242 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 NAT8Q9UHE5 227 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 VPS13DQ5THJ4 4388 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 TEX50A0A1B0GTY4 177 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 A0A1B0GWB2 263 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 C4orf51C9J302 202 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 GUSBP1Q15486 140 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 TMEM255AQ5JRV8 349 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 PLAC9Q5JTB6 97 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 CSNK1G2-AS1Q8NCQ2 148 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 IL25Q9H293 177 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 TMEM167BQ9NRX6 74 aa1.81□□□□□ -2.12
CCDC88A-205ENST00000426576 MACF1Q9UPN3 7388 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 A0A1B0GV50 99 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 hDV103S1A0JD37 113 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 SPINK1P00995 79 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 NBEAP1P0C6P0 100 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 SEC61GP60059 68 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 MOBPQ13875 183 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 CNPY1Q3B7I2 92 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 TEX43Q6ZNM6 134 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 L3HYPDHQ96EM0 354 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 ZNF331Q9NQX6 463 aaPredicted RBP1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 DOCK4Q8N1I0 1966 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 DYNC2H1Q8NCM8 4307 aaKnown RBP1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 TANC2Q9HCD6 1990 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 TRBV20OR9-2A0A075B6H5 130 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 TMEM218A2RU14 115 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 PMS2P5A8MQ11 134 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 PMP2P02689 132 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 FABP2P12104 132 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 PMVKQ15126 192 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 ARHGAP21Q5T5U3 1957 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 TRBV10-1A0A0K0K1A3 114 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 UBE2L5PA0A1B0GUS4 154 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 TRBV6-4A0A1B0GX49 114 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 SCGB1D1O95968 90 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 TOMM40O96008 361 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 IGLV7-43P04211 117 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 C3orf79P0CE67 100 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 BCL2P10415 239 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 DCTDP32321 178 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 UPK3BQ9BT76 320 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 CRCT1Q9UGL9 99 aa1.8□□□□□ -2.12
CCDC88A-205ENST00000426576 TRAV9-1A0A075B6T8 112 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 TEX22C9J3V5 150 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 PPYP01298 95 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 KRTAP11-1Q8IUC1 163 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 TMEM80Q96HE8 168 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 Q96NJ1 140 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 TIMM21Q9BVV7 248 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 MTFP1Q9UDX5 166 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 ELF5Q9UKW6 265 aaPredicted RBP1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 OTOGQ6ZRI0 2925 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 A0A087WXM4 84 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 A6NDN8 102 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 SSSCA1O60232 199 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 RIGQ13278 110 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 HIST2H3PS2Q5TEC6 136 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 ATRAIDQ6UW56 229 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 SCGB1D4Q6XE38 83 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 CYP2G1PQ6ZSU1 146 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 HIST2H3AQ71DI3 136 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 ENKURQ8TC29 256 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 MYOZ3Q8TDC0 251 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 XAGE1AQ9HD64 81 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 PKHD1P08F94 4074 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 GATA1P15976 413 aaPredicted RBP1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 TMEM170BQ5T4T1 132 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 ZFP2Q6ZN57 461 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 DIRAS2Q96HU8 199 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 IGKV1D-42A0A075B6H8 117 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 A0A087X002 238 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 hADV29S1A0JD25 119 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 OTX1P32242 354 aaPredicted RBP1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 PYDC2Q56P42 97 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 MRPL54Q6P161 138 aaKnown RBP1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 LINC00612Q8N6U2 182 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 LINC00526Q96FQ7 95 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 PRO1933Q9H354 126 aa1.79□□□□□ -2.12
CCDC88A-205ENST00000426576 TTRP02766 147 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 METTL15P1P0C7V9 234 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 IFITM1P13164 125 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 CXCL5P42830 114 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 C10orf91Q5T1B1 145 aa1.78□□□□□ -2.12
CCDC88A-205ENST00000426576 GFI1BQ5VTD9 330 aa1.78□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms