RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 LYPD5Q6UWN5 251 aa7.02□□□□□ -1.29
CD44-207ENST00000425428 C18orf32Q8TCD1 76 aa7.02□□□□□ -1.29
CD44-207ENST00000425428 TMEM243Q9BU79 118 aa7.02□□□□□ -1.29
CD44-207ENST00000425428 AP5S1Q9NUS5 200 aa7.02□□□□□ -1.29
CD44-207ENST00000425428 LOC100996750A0A140TA64 210 aa7.01□□□□□ -1.29
CD44-207ENST00000425428 TMEM262E9PQX1 116 aa7.01□□□□□ -1.29
CD44-207ENST00000425428 GAS8-AS1O95177 125 aa7.01□□□□□ -1.29
CD44-207ENST00000425428 LINC00614P0C842 121 aa7.01□□□□□ -1.29
CD44-207ENST00000425428 IFI27P40305 119 aaPredicted RBP7.01□□□□□ -1.29
CD44-207ENST00000425428 Q0VG73 95 aa7.01□□□□□ -1.29
CD44-207ENST00000425428 CASC10Q5T4H9 136 aa7.01□□□□□ -1.29
CD44-207ENST00000425428 CHCHD1Q96BP2 118 aaKnown RBP7.01□□□□□ -1.29
CD44-207ENST00000425428 TMEM101Q96IK0 257 aa7.01□□□□□ -1.29
CD44-207ENST00000425428 KRTAP4-6Q9BYQ5 205 aa7.01□□□□□ -1.29
CD44-207ENST00000425428 APLNQ9ULZ1 77 aa7.01□□□□□ -1.29
CD44-207ENST00000425428 TRAV9-2A0A087WT02 112 aa7□□□□□ -1.29
CD44-207ENST00000425428 A0A087WX48 190 aa7□□□□□ -1.29
CD44-207ENST00000425428 H7C423 109 aa7□□□□□ -1.29
CD44-207ENST00000425428 HSBP1O75506 76 aa7□□□□□ -1.29
CD44-207ENST00000425428 LINC00694P0DN24 101 aa7□□□□□ -1.29
CD44-207ENST00000425428 DGAT2L7PQ6IED9 249 aa7□□□□□ -1.29
CD44-207ENST00000425428 BTF3P20290 206 aaKnown RBP7□□□□□ -1.29
CD44-207ENST00000425428 NIT1Q86X76 327 aa7□□□□□ -1.29
CD44-207ENST00000425428 Q9UF83 564 aa7□□□□□ -1.29
CD44-207ENST00000425428 IQCJQ1A5X6 159 aa6.99□□□□□ -1.29
CD44-207ENST00000425428 ESRGQ1W209 222 aa6.99□□□□□ -1.29
CD44-207ENST00000425428 CYSLTR1Q9Y271 337 aa6.99□□□□□ -1.29
CD44-207ENST00000425428 MRPS16Q9Y3D3 137 aaKnown RBP6.99□□□□□ -1.29
CD44-207ENST00000425428 HIST1H2BKO60814 126 aa6.98□□□□□ -1.29
CD44-207ENST00000425428 TSHBP01222 138 aa6.98□□□□□ -1.29
CD44-207ENST00000425428 HIST1H2BJP06899 126 aa6.98□□□□□ -1.29
CD44-207ENST00000425428 HIST1H2BOP23527 126 aa6.98□□□□□ -1.29
CD44-207ENST00000425428 HIST1H2BBP33778 126 aa6.98□□□□□ -1.29
CD44-207ENST00000425428 HIST1H2BDP58876 126 aa6.98□□□□□ -1.29
CD44-207ENST00000425428 HIST1H2BCP62807 126 aa6.98□□□□□ -1.29
CD44-207ENST00000425428 HIST2H2BEQ16778 126 aa6.98□□□□□ -1.29
CD44-207ENST00000425428 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.98□□□□□ -1.29
CD44-207ENST00000425428 HIST1H2BHQ93079 126 aa6.98□□□□□ -1.29
CD44-207ENST00000425428 HIST1H2BNQ99877 126 aa6.98□□□□□ -1.29
CD44-207ENST00000425428 HIST1H2BMQ99879 126 aa6.98□□□□□ -1.29
CD44-207ENST00000425428 NDUFA6P56556 154 aa6.97□□□□□ -1.29
CD44-207ENST00000425428 PAPPA-AS1Q5QFB9 102 aa6.97□□□□□ -1.29
CD44-207ENST00000425428 DEFB104AQ8WTQ1 72 aa6.97□□□□□ -1.29
CD44-207ENST00000425428 CHCHD7Q9BUK0 85 aa6.97□□□□□ -1.29
CD44-207ENST00000425428 K7EP13 123 aa6.97□□□□□ -1.29
CD44-207ENST00000425428 SIVA1O15304 175 aa6.97□□□□□ -1.29
CD44-207ENST00000425428 ZNF25P17030 456 aaPredicted RBP6.97□□□□□ -1.29
CD44-207ENST00000425428 LGALS9CQ6DKI2 356 aa6.97□□□□□ -1.29
CD44-207ENST00000425428 Q6ZN92 141 aa6.97□□□□□ -1.29
CD44-207ENST00000425428 C10orf126Q8N4M7 172 aa6.97□□□□□ -1.29
CD44-207ENST00000425428 IGLV2-18A0A075B6J9 118 aa6.96□□□□□ -1.3
CD44-207ENST00000425428 HBDP02042 147 aa6.96□□□□□ -1.3
CD44-207ENST00000425428 GAGE6Q13070 117 aa6.96□□□□□ -1.3
CD44-207ENST00000425428 C20orf203Q8NBC4 194 aa6.96□□□□□ -1.3
CD44-207ENST00000425428 OR5A1Q8NGJ0 315 aa6.96□□□□□ -1.3
CD44-207ENST00000425428 UPK3BQ9BT76 320 aa6.96□□□□□ -1.3
CD44-207ENST00000425428 LINC00588Q9Y4M8 146 aa6.96□□□□□ -1.3
CD44-207ENST00000425428 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.95□□□□□ -1.3
CD44-207ENST00000425428 IGKV2-29A2NJV5 120 aaPredicted RBP6.95□□□□□ -1.3
CD44-207ENST00000425428 LY6G6CO95867 125 aa6.95□□□□□ -1.3
CD44-207ENST00000425428 S100A2P29034 98 aa6.95□□□□□ -1.3
CD44-207ENST00000425428 TTC32Q5I0X7 151 aa6.95□□□□□ -1.3
CD44-207ENST00000425428 C2orf66Q6UXQ4 117 aa6.95□□□□□ -1.3
CD44-207ENST00000425428 NTM-AS1Q6ZSK4 140 aa6.95□□□□□ -1.3
CD44-207ENST00000425428 Q9H8V8 135 aa6.95□□□□□ -1.3
CD44-207ENST00000425428 SPANXA1Q9NS26 97 aa6.95□□□□□ -1.3
CD44-207ENST00000425428 LINC01546A6NGU7 62 aa6.95□□□□□ -1.3
CD44-207ENST00000425428 SERF1AO75920 110 aa6.95□□□□□ -1.3
CD44-207ENST00000425428 CRPP02741 224 aa6.95□□□□□ -1.3
CD44-207ENST00000425428 FGF6P10767 208 aa6.95□□□□□ -1.3
CD44-207ENST00000425428 ESDP10768 282 aa6.95□□□□□ -1.3
CD44-207ENST00000425428 SCGB3A1Q96QR1 104 aa6.95□□□□□ -1.3
CD44-207ENST00000425428 A0A1B0GUV1 79 aa6.94□□□□□ -1.3
CD44-207ENST00000425428 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.94□□□□□ -1.3
CD44-207ENST00000425428 ATP5LO75964 103 aa6.94□□□□□ -1.3
CD44-207ENST00000425428 ANGP03950 147 aaKnown RBP6.94□□□□□ -1.3
CD44-207ENST00000425428 TIMM21Q9BVV7 248 aa6.94□□□□□ -1.3
CD44-207ENST00000425428 HSPB8Q9UJY1 196 aa6.94□□□□□ -1.3
CD44-207ENST00000425428 NPSP0C0P6 89 aa6.93□□□□□ -1.3
CD44-207ENST00000425428 LINC01556Q5JQF7 62 aa6.93□□□□□ -1.3
CD44-207ENST00000425428 TOMM6Q96B49 74 aa6.93□□□□□ -1.3
CD44-207ENST00000425428 TMEM141Q96I45 108 aa6.93□□□□□ -1.3
CD44-207ENST00000425428 C2orf88Q9BSF0 95 aa6.93□□□□□ -1.3
CD44-207ENST00000425428 DNAH7Q8WXX0 4024 aa6.93□□□□□ -1.3
CD44-207ENST00000425428 LEPROTL1O95214 131 aa6.92□□□□□ -1.3
CD44-207ENST00000425428 IGHV3-30P01768 117 aa6.92□□□□□ -1.3
CD44-207ENST00000425428 IGHV3-33P01772 117 aa6.92□□□□□ -1.3
CD44-207ENST00000425428 IGHV3-30-3P0DP02 117 aa6.92□□□□□ -1.3
CD44-207ENST00000425428 IGHV3-30-5P0DP03 117 aa6.92□□□□□ -1.3
CD44-207ENST00000425428 ERASQ7Z444 233 aa6.92□□□□□ -1.3
CD44-207ENST00000425428 WFDC10BQ8IUB3 73 aa6.92□□□□□ -1.3
CD44-207ENST00000425428 CSDC2Q9Y534 153 aaKnown RBP6.92□□□□□ -1.3
CD44-207ENST00000425428 DNAH10OSP0CZ25 163 aa6.92□□□□□ -1.3
CD44-207ENST00000425428 RPL39P62891 51 aaKnown RBP6.92□□□□□ -1.3
CD44-207ENST00000425428 TEX43Q6ZNM6 134 aa6.92□□□□□ -1.3
CD44-207ENST00000425428 MRPL52Q86TS9 123 aaKnown RBP6.92□□□□□ -1.3
CD44-207ENST00000425428 RMI2Q96E14 147 aa6.92□□□□□ -1.3
CD44-207ENST00000425428 TIMM17AQ99595 171 aa6.92□□□□□ -1.3
CD44-207ENST00000425428 VCX2Q9H322 139 aa6.92□□□□□ -1.3
CD44-207ENST00000425428 TMA7Q9Y2S6 64 aaKnown RBP6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms