RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 H3BUA1 57 aa15.66■□□□□ 0.1
USP48-205ENST00000421625 H7C423 109 aa15.66■□□□□ 0.1
USP48-205ENST00000421625 CD28P10747 220 aa15.66■□□□□ 0.1
USP48-205ENST00000421625 H3BUX3 64 aa15.65■□□□□ 0.1
USP48-205ENST00000421625 BRI3O95415 125 aa15.65■□□□□ 0.1
USP48-205ENST00000421625 IGHV4-38-2P0DP08 117 aa15.65■□□□□ 0.1
USP48-205ENST00000421625 IGHV1OR15-1A0A075B7D0 117 aa15.64■□□□□ 0.09
USP48-205ENST00000421625 CLEC2BQ92478 149 aa15.64■□□□□ 0.09
USP48-205ENST00000421625 IGHV3-73A0A0B4J1V6 119 aa15.64■□□□□ 0.09
USP48-205ENST00000421625 GAGE12JA6NER3 117 aa15.63■□□□□ 0.09
USP48-205ENST00000421625 GAGE7O76087 117 aa15.63■□□□□ 0.09
USP48-205ENST00000421625 GAGE12FP0CL80 117 aa15.63■□□□□ 0.09
USP48-205ENST00000421625 GAGE12GP0CL81 117 aa15.63■□□□□ 0.09
USP48-205ENST00000421625 GAGE12IP0CL82 117 aa15.63■□□□□ 0.09
USP48-205ENST00000421625 GAGE4Q13068 117 aa15.63■□□□□ 0.09
USP48-205ENST00000421625 FAM208BQ5VWN6 2430 aa15.63■□□□□ 0.09
USP48-205ENST00000421625 CELSR2Q9HCU4 2923 aa15.63■□□□□ 0.09
USP48-205ENST00000421625 CSMD2Q7Z408 3487 aa15.63■□□□□ 0.09
USP48-205ENST00000421625 NDUFA12Q9UI09 145 aa15.63■□□□□ 0.09
USP48-205ENST00000421625 ZNF462Q96JM2 2506 aa15.62■□□□□ 0.09
USP48-205ENST00000421625 SORL1Q92673 2214 aa15.62■□□□□ 0.09
USP48-205ENST00000421625 IGLV1-40P01703 118 aa15.62■□□□□ 0.09
USP48-205ENST00000421625 PROK1P58294 105 aa15.62■□□□□ 0.09
USP48-205ENST00000421625 Q6Q795 121 aa15.62■□□□□ 0.09
USP48-205ENST00000421625 MRPS36P82909 103 aaKnown RBP15.62■□□□□ 0.09
USP48-205ENST00000421625 TMEM95Q3KNT9 176 aa15.61■□□□□ 0.09
USP48-205ENST00000421625 IGHV1-58A0A0C4DH39 117 aa15.6■□□□□ 0.09
USP48-205ENST00000421625 A6NDX4 124 aa15.6■□□□□ 0.09
USP48-205ENST00000421625 K7EMT4 169 aa15.6■□□□□ 0.09
USP48-205ENST00000421625 SPANXDQ9BXN6 97 aa15.6■□□□□ 0.09
USP48-205ENST00000421625 SPANXCQ9NY87 97 aa15.6■□□□□ 0.09
USP48-205ENST00000421625 LRRK2Q5S007 2527 aa15.6■□□□□ 0.09
USP48-205ENST00000421625 DOPEY1Q5JWR5 2465 aa15.59■□□□□ 0.09
USP48-205ENST00000421625 C3orf56Q8N813 242 aa15.59■□□□□ 0.09
USP48-205ENST00000421625 MIAQ16674 131 aa15.59■□□□□ 0.09
USP48-205ENST00000421625 DUX3Q96PT4 197 aa15.59■□□□□ 0.09
USP48-205ENST00000421625 DOPEY2Q9Y3R5 2298 aa15.59■□□□□ 0.09
USP48-205ENST00000421625 Q9UF83 564 aa15.58■□□□□ 0.09
USP48-205ENST00000421625 PYGO1Q9Y3Y4 419 aa15.58■□□□□ 0.08
USP48-205ENST00000421625 HTN1P15515 57 aa15.57■□□□□ 0.08
USP48-205ENST00000421625 H3BT86 120 aa15.57■□□□□ 0.08
USP48-205ENST00000421625 COX6CP09669 75 aa15.57■□□□□ 0.08
USP48-205ENST00000421625 DAND5Q8N907 189 aa15.57■□□□□ 0.08
USP48-205ENST00000421625 VSIG2Q96IQ7 327 aa15.57■□□□□ 0.08
USP48-205ENST00000421625 SNRPD3P62318 126 aaKnown RBP15.56■□□□□ 0.08
USP48-205ENST00000421625 CFHR3Q02985 330 aa15.55■□□□□ 0.08
USP48-205ENST00000421625 C10orf99Q6UWK7 81 aa15.55■□□□□ 0.08
USP48-205ENST00000421625 TMEM61Q8N0U2 210 aa15.55■□□□□ 0.08
USP48-205ENST00000421625 POLQO75417 2590 aa15.55■□□□□ 0.08
USP48-205ENST00000421625 IGHV4-61A0A0C4DH41 118 aa15.55■□□□□ 0.08
USP48-205ENST00000421625 LST1O00453 97 aa15.55■□□□□ 0.08
USP48-205ENST00000421625 PRB1P04280 392 aa15.54■□□□□ 0.08
USP48-205ENST00000421625 RBMY1A1P0DJD3 496 aaKnown RBP15.54■□□□□ 0.08
USP48-205ENST00000421625 RBMY1CP0DJD4 496 aa15.54■□□□□ 0.08
USP48-205ENST00000421625 RBMY1FQ15415 496 aaKnown RBP15.54■□□□□ 0.08
USP48-205ENST00000421625 K7EQG2 157 aa15.54■□□□□ 0.08
USP48-205ENST00000421625 KNCNA6PVL3 124 aa15.53■□□□□ 0.08
USP48-205ENST00000421625 PRM2P04554 102 aa15.53■□□□□ 0.08
USP48-205ENST00000421625 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.52■□□□□ 0.08
USP48-205ENST00000421625 IGKV2-29A2NJV5 120 aaPredicted RBP15.52■□□□□ 0.08
USP48-205ENST00000421625 TINCRA0A1B0GVN0 87 aa15.52■□□□□ 0.07
USP48-205ENST00000421625 TNFRSF18Q9Y5U5 241 aa15.51■□□□□ 0.07
USP48-205ENST00000421625 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.51■□□□□ 0.077e-7■■■■□ 21.9
USP48-205ENST00000421625 TRGV11A0A075B6L2 103 aa15.51■□□□□ 0.07
USP48-205ENST00000421625 Q6ZSN1 163 aa15.5■□□□□ 0.07
USP48-205ENST00000421625 CHCHD7Q9BUK0 85 aa15.5■□□□□ 0.07
USP48-205ENST00000421625 UBE2D4Q9Y2X8 147 aa15.5■□□□□ 0.07
USP48-205ENST00000421625 FAM110AQ9BQ89 295 aa15.49■□□□□ 0.07
USP48-205ENST00000421625 DUX5Q96PT3 197 aa15.49■□□□□ 0.07
USP48-205ENST00000421625 CHCHD5Q9BSY4 110 aa15.49■□□□□ 0.07
USP48-205ENST00000421625 DEFB121Q5J5C9 76 aa15.49■□□□□ 0.07
USP48-205ENST00000421625 NACAE9PAV3 2078 aa15.48■□□□□ 0.07
USP48-205ENST00000421625 PSMB8P28062 276 aa15.48■□□□□ 0.07
USP48-205ENST00000421625 FAM240AA0A1B0GVK7 77 aa15.48■□□□□ 0.07
USP48-205ENST00000421625 MRPL23Q16540 153 aaKnown RBP15.48■□□□□ 0.07
USP48-205ENST00000421625 YAE1D1Q9NRH1 226 aa15.48■□□□□ 0.07
USP48-205ENST00000421625 USP9YO00507 2555 aaPredicted RBP15.48■□□□□ 0.07
USP48-205ENST00000421625 SYNJ2BPP57105 145 aa15.47■□□□□ 0.07
USP48-205ENST00000421625 CITED2Q99967 270 aaPredicted RBP15.47■□□□□ 0.07
USP48-205ENST00000421625 LINC00467Q9BRT7 94 aa15.47■□□□□ 0.07
USP48-205ENST00000421625 CDKN2A-AS1Q9UH64 79 aa15.47■□□□□ 0.07
USP48-205ENST00000421625 IGHV3-38A0A0C4DH36 116 aa15.47■□□□□ 0.07
USP48-205ENST00000421625 EDA2RQ9HAV5 297 aa15.47■□□□□ 0.07
USP48-205ENST00000421625 MEIG1Q5JSS6 88 aa15.46■□□□□ 0.07
USP48-205ENST00000421625 SPANXA1Q9NS26 97 aa15.45■□□□□ 0.06
USP48-205ENST00000421625 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.45■□□□□ 0.06
USP48-205ENST00000421625 A0A0U1RRA0 63 aa15.44■□□□□ 0.06
USP48-205ENST00000421625 CSPG4Q6UVK1 2322 aa15.43■□□□□ 0.06
USP48-205ENST00000421625 TMEM101Q96IK0 257 aa15.43■□□□□ 0.06
USP48-205ENST00000421625 PIMREGQ9BSJ6 248 aa15.43■□□□□ 0.06
USP48-205ENST00000421625 TIMM17BO60830 172 aa15.43■□□□□ 0.06
USP48-205ENST00000421625 ABCA12Q86UK0 2595 aa15.42■□□□□ 0.06
USP48-205ENST00000421625 AVPP01185 164 aa15.42■□□□□ 0.06
USP48-205ENST00000421625 ZNF625Q96I27 306 aaPredicted RBP15.42■□□□□ 0.06
USP48-205ENST00000421625 BBC3Q96PG8 261 aaPredicted RBP15.42■□□□□ 0.06
USP48-205ENST00000421625 PTPN13Q12923 2485 aa15.42■□□□□ 0.06
USP48-205ENST00000421625 CREBBPQ92793 2442 aa15.42■□□□□ 0.06
USP48-205ENST00000421625 TRBV7-7A0A0K0K1E9 115 aa15.42■□□□□ 0.06
USP48-205ENST00000421625 NDUFA1O15239 70 aa15.41■□□□□ 0.06
USP48-205ENST00000421625 NRGNQ92686 78 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms