RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 AMTP48728 403 aa13.85□□□□□ -0.19
PTPN4-202ENST00000420482 OCC1Q8TAD7 63 aa13.85□□□□□ -0.19
PTPN4-202ENST00000420482 RNASE7Q9H1E1 156 aaKnown RBP13.85□□□□□ -0.19
PTPN4-202ENST00000420482 TEX261Q6UWH6 196 aa13.84□□□□□ -0.19
PTPN4-202ENST00000420482 IGLV10-54A0A075B6I4 117 aa13.83□□□□□ -0.2
PTPN4-202ENST00000420482 Q6ZNX1 250 aa13.83□□□□□ -0.2
PTPN4-202ENST00000420482 C9orf163Q8N9P6 203 aa13.83□□□□□ -0.2
PTPN4-202ENST00000420482 C20orf203Q8NBC4 194 aa13.83□□□□□ -0.2
PTPN4-202ENST00000420482 K7EN84 100 aa13.82□□□□□ -0.2
PTPN4-202ENST00000420482 AP5S1Q9NUS5 200 aa13.82□□□□□ -0.2
PTPN4-202ENST00000420482 A8MWL6 223 aa13.81□□□□□ -0.2
PTPN4-202ENST00000420482 GATCO43716 136 aaKnown RBP13.81□□□□□ -0.2
PTPN4-202ENST00000420482 KRTAP26-1Q6PEX3 210 aa13.81□□□□□ -0.2
PTPN4-202ENST00000420482 ALKAL2Q6UX46 152 aa13.81□□□□□ -0.2
PTPN4-202ENST00000420482 BORCS7Q96B45 105 aa13.81□□□□□ -0.2
PTPN4-202ENST00000420482 IGLV4-60A0A075B6I1 120 aa13.8□□□□□ -0.2
PTPN4-202ENST00000420482 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.8□□□□□ -0.2
PTPN4-202ENST00000420482 hDV102S1A0JD36 115 aa13.8□□□□□ -0.2
PTPN4-202ENST00000420482 GATD1Q8NB37 220 aa13.8□□□□□ -0.2
PTPN4-202ENST00000420482 KRTAP29-1A8MX34 341 aaPredicted RBP13.79□□□□□ -0.2
PTPN4-202ENST00000420482 NCR2O95944 276 aa13.79□□□□□ -0.2
PTPN4-202ENST00000420482 AMMECR1LQ6DCA0 310 aa13.79□□□□□ -0.2
PTPN4-202ENST00000420482 FAM231DQ6ZW35 169 aa13.79□□□□□ -0.2
PTPN4-202ENST00000420482 TRAV26-2A0A0B4J265 109 aa13.78□□□□□ -0.2
PTPN4-202ENST00000420482 CEBPGP53567 150 aa13.78□□□□□ -0.2
PTPN4-202ENST00000420482 GTSF1Q8WW33 167 aa13.78□□□□□ -0.2
PTPN4-202ENST00000420482 CNBPP62633 177 aaKnown RBP13.77□□□□□ -0.21
PTPN4-202ENST00000420482 CFAP161Q6P656 301 aa13.77□□□□□ -0.21
PTPN4-202ENST00000420482 H7C423 109 aa13.76□□□□□ -0.21
PTPN4-202ENST00000420482 APCSP02743 223 aa13.76□□□□□ -0.21
PTPN4-202ENST00000420482 CT83Q5H943 113 aa13.76□□□□□ -0.21
PTPN4-202ENST00000420482 LYPD6BQ8NI32 183 aa13.76□□□□□ -0.21
PTPN4-202ENST00000420482 EIF5A2Q9GZV4 153 aaKnown RBP13.76□□□□□ -0.21
PTPN4-202ENST00000420482 hCG_2014768A0A024R1R8 64 aa13.75□□□□□ -0.21
PTPN4-202ENST00000420482 RPL37AP61513 92 aaKnown RBP13.75□□□□□ -0.21
PTPN4-202ENST00000420482 IGHV3-64A0A075B6Q5 118 aa13.74□□□□□ -0.21
PTPN4-202ENST00000420482 NDUFS6O75380 124 aaKnown RBP13.74□□□□□ -0.21
PTPN4-202ENST00000420482 RNASEKQ6P5S7 137 aaKnown RBP13.74□□□□□ -0.21
PTPN4-202ENST00000420482 FAM210AQ96ND0 272 aa13.74□□□□□ -0.21
PTPN4-202ENST00000420482 SMIM7Q9BQ49 75 aa13.74□□□□□ -0.21
PTPN4-202ENST00000420482 GFRA4Q9GZZ7 299 aa13.74□□□□□ -0.21
PTPN4-202ENST00000420482 SDHAF1A6NFY7 115 aa13.73□□□□□ -0.21
PTPN4-202ENST00000420482 FOXA3P55318 350 aaPredicted RBP13.73□□□□□ -0.21
PTPN4-202ENST00000420482 SDIM1Q6ZPB5 146 aa13.73□□□□□ -0.21
PTPN4-202ENST00000420482 RPL39LQ96EH5 51 aaKnown RBP13.73□□□□□ -0.21
PTPN4-202ENST00000420482 IGKV3OR2-268A0A0C4DH90 116 aa13.72□□□□□ -0.21
PTPN4-202ENST00000420482 PMCHP20382 165 aa13.72□□□□□ -0.21
PTPN4-202ENST00000420482 DPH3Q96FX2 82 aa13.72□□□□□ -0.21
PTPN4-202ENST00000420482 BTF3L4Q96K17 158 aa13.72□□□□□ -0.21
PTPN4-202ENST00000420482 I3L3M4 83 aa13.71□□□□□ -0.21
PTPN4-202ENST00000420482 OXTP01178 125 aa13.71□□□□□ -0.21
PTPN4-202ENST00000420482 ZNF25P17030 456 aaPredicted RBP13.71□□□□□ -0.21
PTPN4-202ENST00000420482 TMEM101Q96IK0 257 aa13.71□□□□□ -0.21
PTPN4-202ENST00000420482 A0A1B0GUT8 65 aa13.7□□□□□ -0.22
PTPN4-202ENST00000420482 FAM231BA6NCW3 169 aa13.7□□□□□ -0.22
PTPN4-202ENST00000420482 GAGE12HA6NDE8 117 aa13.7□□□□□ -0.22
PTPN4-202ENST00000420482 KRTAP10-4P60372 401 aaPredicted RBP13.7□□□□□ -0.22
PTPN4-202ENST00000420482 TSKUQ8WUA8 353 aa13.7□□□□□ -0.22
PTPN4-202ENST00000420482 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.7□□□□□ -0.22
PTPN4-202ENST00000420482 TRBV6-5A0A0K0K1A5 114 aa13.69□□□□□ -0.22
PTPN4-202ENST00000420482 ZNF727A8MUV8 499 aa13.69□□□□□ -0.22
PTPN4-202ENST00000420482 FGF6P10767 208 aa13.69□□□□□ -0.22
PTPN4-202ENST00000420482 LINC01551Q86U37 167 aa13.69□□□□□ -0.22
PTPN4-202ENST00000420482 RNF185Q96GF1 192 aa13.69□□□□□ -0.22
PTPN4-202ENST00000420482 ST20Q9HBF5 79 aa13.69□□□□□ -0.22
PTPN4-202ENST00000420482 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.68□□□□□ -0.22
PTPN4-202ENST00000420482 IGKV2-29A2NJV5 120 aaPredicted RBP13.68□□□□□ -0.22
PTPN4-202ENST00000420482 HIGD1CA8MV81 97 aa13.68□□□□□ -0.22
PTPN4-202ENST00000420482 TMEM191AQ9H0A3 160 aa13.68□□□□□ -0.22
PTPN4-202ENST00000420482 CHCHD10Q8WYQ3 142 aaPredicted RBP13.67□□□□□ -0.22
PTPN4-202ENST00000420482 OSTCQ9NRP0 149 aa13.67□□□□□ -0.22
PTPN4-202ENST00000420482 MRAP2Q96G30 205 aa13.66□□□□□ -0.22
PTPN4-202ENST00000420482 LRP1Q07954 4544 aaKnown RBP13.65□□□□□ -0.22
PTPN4-202ENST00000420482 RPS10P46783 165 aaKnown RBP13.65□□□□□ -0.22
PTPN4-202ENST00000420482 CIRBPQ14011 172 aaKnown RBP13.65□□□□□ -0.22
PTPN4-202ENST00000420482 OR5A1Q8NGJ0 315 aa13.65□□□□□ -0.22
PTPN4-202ENST00000420482 PPP1R17O96001 155 aa13.64□□□□□ -0.23
PTPN4-202ENST00000420482 C15orf56Q8N910 161 aa13.64□□□□□ -0.23
PTPN4-202ENST00000420482 RIGQ13278 110 aa13.63□□□□□ -0.23
PTPN4-202ENST00000420482 FAM74A3Q4VXF1 159 aa13.63□□□□□ -0.23
PTPN4-202ENST00000420482 PKIGQ9Y2B9 76 aa13.63□□□□□ -0.23
PTPN4-202ENST00000420482 PANO1I0J062 215 aa13.62□□□□□ -0.23
PTPN4-202ENST00000420482 SLPIP03973 132 aa13.62□□□□□ -0.23
PTPN4-202ENST00000420482 SRP19P09132 144 aaKnown RBP13.62□□□□□ -0.23
PTPN4-202ENST00000420482 SMAGPQ0VAQ4 97 aa13.62□□□□□ -0.23
PTPN4-202ENST00000420482 SERTAD4-AS1Q5TG53 156 aa13.62□□□□□ -0.23
PTPN4-202ENST00000420482 FAT3Q8TDW7 4589 aa13.61□□□□□ -0.23
PTPN4-202ENST00000420482 RAB4AP20338 218 aa13.61□□□□□ -0.23
PTPN4-202ENST00000420482 TMEM241Q24JQ0 296 aa13.61□□□□□ -0.23
PTPN4-202ENST00000420482 HIGD2BQ4VC39 106 aa13.61□□□□□ -0.23
PTPN4-202ENST00000420482 TMEM242Q9NWH2 141 aa13.61□□□□□ -0.23
PTPN4-202ENST00000420482 HMCN2Q8NDA2 5059 aa13.61□□□□□ -0.23
PTPN4-202ENST00000420482 A0A087WYN8 130 aa13.6□□□□□ -0.23
PTPN4-202ENST00000420482 GVQW2A0A096LPI5 108 aaPredicted RBP13.6□□□□□ -0.23
PTPN4-202ENST00000420482 TRBV27A0A0K0K1C4 114 aa13.6□□□□□ -0.23
PTPN4-202ENST00000420482 TSHBP01222 138 aa13.6□□□□□ -0.23
PTPN4-202ENST00000420482 ESDP10768 282 aa13.6□□□□□ -0.23
PTPN4-202ENST00000420482 SS18Q15532 418 aa13.6□□□□□ -0.23
PTPN4-202ENST00000420482 SPACA4Q8TDM5 124 aa13.6□□□□□ -0.23
PTPN4-202ENST00000420482 C7orf77A4D0Y5 90 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms