RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 ADGRG4Q8IZF6 3080 aa4.17□□□□□ -1.74
CCDC88A-203ENST00000412148 SPINK13Q1W4C9 94 aa4.17□□□□□ -1.74
CCDC88A-203ENST00000412148 FAM222AQ5U5X8 452 aa4.17□□□□□ -1.74
CCDC88A-203ENST00000412148 IL17DQ8TAD2 202 aa4.17□□□□□ -1.74
CCDC88A-203ENST00000412148 TNFRSF18Q9Y5U5 241 aa4.17□□□□□ -1.74
CCDC88A-203ENST00000412148 PTPRQQ9UMZ3 2332 aa4.17□□□□□ -1.74
CCDC88A-203ENST00000412148 TRACP01848 142 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 HERVK_113P63121 156 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 LY6DQ14210 128 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 LY6EQ16553 131 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 ADAMTSL4-AS1Q5T5F5 129 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 C2orf82Q6UX34 121 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 C11orf72Q8NBR9 251 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 WNK2Q9Y3S1 2297 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 H3BS24 57 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 C19orf84I3L1E1 186 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 RBMY1A1P0DJD3 496 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 RBMY1CP0DJD4 496 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 CIRBPQ14011 172 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 RBMY1FQ15415 496 aaKnown RBP4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 CCL19Q99731 98 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 ATMQ13315 3056 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 SPTBN2O15020 2390 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 TRAV12-2A0A075B6T6 113 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 TRBV10-1A0A0K0K1A3 114 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 A8MZ25 164 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 ATP5G1P05496 136 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 HERV-K104P63124 156 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 Q1RN00 199 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 SFTA2Q6UW10 78 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 X6R8D5 127 aa4.16□□□□□ -1.74
CCDC88A-203ENST00000412148 RP1L1Q8IWN7 2480 aaPredicted RBP4.15□□□□□ -1.74
CCDC88A-203ENST00000412148 A0A096LNT2 108 aa4.15□□□□□ -1.74
CCDC88A-203ENST00000412148 TRAV4A0A0B4J268 109 aa4.15□□□□□ -1.74
CCDC88A-203ENST00000412148 TEX49A0A1B0GTD5 131 aa4.15□□□□□ -1.74
CCDC88A-203ENST00000412148 GAGE12JA6NER3 117 aa4.15□□□□□ -1.74
CCDC88A-203ENST00000412148 COX7A2LO14548 114 aa4.15□□□□□ -1.74
CCDC88A-203ENST00000412148 GAGE7O76087 117 aa4.15□□□□□ -1.74
CCDC88A-203ENST00000412148 GAGE12FP0CL80 117 aa4.15□□□□□ -1.74
CCDC88A-203ENST00000412148 GAGE12GP0CL81 117 aa4.15□□□□□ -1.74
CCDC88A-203ENST00000412148 GAGE12IP0CL82 117 aa4.15□□□□□ -1.74
CCDC88A-203ENST00000412148 GAGE4Q13068 117 aa4.15□□□□□ -1.74
CCDC88A-203ENST00000412148 VPREB3Q9UKI3 123 aa4.15□□□□□ -1.74
CCDC88A-203ENST00000412148 TACC2O95359 2948 aa4.15□□□□□ -1.75
CCDC88A-203ENST00000412148 LRBAP50851 2863 aa4.15□□□□□ -1.75
CCDC88A-203ENST00000412148 IGHV3OR16-10A0A075B7F0 116 aa4.15□□□□□ -1.75
CCDC88A-203ENST00000412148 AVPP01185 164 aa4.15□□□□□ -1.75
CCDC88A-203ENST00000412148 HOXD3P31249 432 aaPredicted RBP4.15□□□□□ -1.75
CCDC88A-203ENST00000412148 LINC01356Q8N9X3 169 aa4.15□□□□□ -1.75
CCDC88A-203ENST00000412148 MDFIQ99750 246 aa4.15□□□□□ -1.75
CCDC88A-203ENST00000412148 CEP250Q9BV73 2442 aa4.15□□□□□ -1.75
CCDC88A-203ENST00000412148 IGKV3-7A0A075B6H7 116 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 IGHV4-30-2A0A087WSY4 118 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 TRAV8-3A0A0A6YYJ7 113 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 TRAV25A0A0B4J276 109 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 TTC32Q5I0X7 151 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 Q6YL49 198 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 C15orf53Q8NAA6 179 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 ZNF625Q96I27 306 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 TMEM101Q96IK0 257 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 EP300Q09472 2414 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 DCHS1Q96JQ0 3298 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 CRLF1O75462 422 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 CXCL5P42830 114 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 DAND5Q8N907 189 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 LINC00308Q8TCZ7 52 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 OVOL2Q9BRP0 275 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 ZNF702PQ9H963 129 aa4.14□□□□□ -1.75
CCDC88A-203ENST00000412148 RBMY1BA6NDE4 496 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 RBMY1EA6NEQ0 496 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 RBMY1DP0C7P1 496 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 ATP5J2P56134 94 aa4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 SYNJ2BPP57105 145 aa4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 DAZ2Q13117 558 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 DAZ4Q86SG3 579 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 DAZ3Q9NR90 486 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 INSP01308 110 aa4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 IGHV4-59P01825 116 aa4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 DEFB112Q30KQ8 113 aa4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 LINC00242Q5T6M2 205 aa4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 C4orf3Q8WVX3 66 aa4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 CDKN2A-AS1Q9UH64 79 aa4.13□□□□□ -1.75
CCDC88A-203ENST00000412148 IGHV3OR16-12A0A075B7B8 117 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 F5H768 121 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 PRSS2P07478 247 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 LINC00643Q86TS7 51 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 DUX3Q96PT4 197 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 TMEM126AQ9H061 195 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 DOPEY2Q9Y3R5 2298 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 ASPMQ8IZT6 3477 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 IGHV3-64A0A075B6Q5 118 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 SMIM1B2RUZ4 78 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 Q6ZSN1 163 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 MAP6D1Q9H9H5 199 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 H7C2G1 150 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 RPL28P46779 137 aaKnown RBP4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 DUX5Q96PT3 197 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 FAM110AQ9BQ89 295 aa4.12□□□□□ -1.75
CCDC88A-203ENST00000412148 INAFM2P0DMQ5 153 aa4.11□□□□□ -1.75
CCDC88A-203ENST00000412148 PROK1P58294 105 aa4.11□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms