RNA–Protein interactions for RNA: ENST00000396521.3

EXOSC3-202, Transcript of exosome component 3, humanhuman

TSL 2 BASIC

Gene EXOSC3, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-202ENST00000396521 SPACA4Q8TDM5 124 aa11.12□□□□□ -0.63
EXOSC3-202ENST00000396521 MLST8Q9BVC4 326 aa11.12□□□□□ -0.63
EXOSC3-202ENST00000396521 PLAC8Q9NZF1 115 aa11.12□□□□□ -0.63
EXOSC3-202ENST00000396521 TMEM250H0YL14 139 aa11.11□□□□□ -0.63
EXOSC3-202ENST00000396521 KIF25-AS1Q9Y6Z4 181 aa11.11□□□□□ -0.63
EXOSC3-202ENST00000396521 IGLV10-54A0A075B6I4 117 aa11.1□□□□□ -0.63
EXOSC3-202ENST00000396521 TMEM243Q9BU79 118 aa11.1□□□□□ -0.63
EXOSC3-202ENST00000396521 M0QY20 66 aa11.09□□□□□ -0.63
EXOSC3-202ENST00000396521 WDR73Q6P4I2 378 aa11.09□□□□□ -0.63
EXOSC3-202ENST00000396521 C20orf203Q8NBC4 194 aa11.09□□□□□ -0.63
EXOSC3-202ENST00000396521 LINC01600Q96MT4 127 aa11.09□□□□□ -0.63
EXOSC3-202ENST00000396521 RAB19A4D1S5 217 aa11.08□□□□□ -0.64
EXOSC3-202ENST00000396521 PEA15Q15121 130 aa11.08□□□□□ -0.64
EXOSC3-202ENST00000396521 SMIM12Q96EX1 92 aa11.08□□□□□ -0.64
EXOSC3-202ENST00000396521 PGLYRP4Q96LB8 373 aa11.08□□□□□ -0.64
EXOSC3-202ENST00000396521 LRP2P98164 4655 aa11.08□□□□□ -0.64
EXOSC3-202ENST00000396521 IFITM2Q01629 132 aa11.07□□□□□ -0.64
EXOSC3-202ENST00000396521 CLLU1Q5K131 121 aa11.07□□□□□ -0.64
EXOSC3-202ENST00000396521 BIN3Q9NQY0 253 aa11.07□□□□□ -0.64
EXOSC3-202ENST00000396521 PHOX2AO14813 284 aa11.06□□□□□ -0.64
EXOSC3-202ENST00000396521 NDUFS6O75380 124 aaKnown RBP11.06□□□□□ -0.64
EXOSC3-202ENST00000396521 SLPIP03973 132 aa11.06□□□□□ -0.64
EXOSC3-202ENST00000396521 RPS10P46783 165 aaKnown RBP11.06□□□□□ -0.64
EXOSC3-202ENST00000396521 SMIM7Q9BQ49 75 aa11.06□□□□□ -0.64
EXOSC3-202ENST00000396521 MUC21A0A0G2JKD1 596 aa11.05□□□□□ -0.64
EXOSC3-202ENST00000396521 MUC21A0A140T8X8 626 aa11.05□□□□□ -0.64
EXOSC3-202ENST00000396521 UBE2L6O14933 153 aa11.05□□□□□ -0.64
EXOSC3-202ENST00000396521 SRP19P09132 144 aaKnown RBP11.05□□□□□ -0.64
EXOSC3-202ENST00000396521 CHTF8P0CG12 524 aa11.05□□□□□ -0.64
EXOSC3-202ENST00000396521 RPS20P60866 119 aaKnown RBP11.05□□□□□ -0.64
EXOSC3-202ENST00000396521 CACNG7P62955 275 aa11.05□□□□□ -0.64
EXOSC3-202ENST00000396521 RASL11AQ6T310 242 aa11.05□□□□□ -0.64
EXOSC3-202ENST00000396521 PKIGQ9Y2B9 76 aa11.05□□□□□ -0.64
EXOSC3-202ENST00000396521 TRBV20OR9-2A0A075B6H5 130 aa11.04□□□□□ -0.64
EXOSC3-202ENST00000396521 IGLV4-60A0A075B6I1 120 aa11.04□□□□□ -0.64
EXOSC3-202ENST00000396521 ZNF727A8MUV8 499 aa11.04□□□□□ -0.64
EXOSC3-202ENST00000396521 SSTP61278 116 aa11.04□□□□□ -0.64
EXOSC3-202ENST00000396521 SMDT1Q9H4I9 107 aa11.04□□□□□ -0.64
EXOSC3-202ENST00000396521 LINC00474Q9P2X8 69 aa11.04□□□□□ -0.64
EXOSC3-202ENST00000396521 F2Z2F3 143 aa11.03□□□□□ -0.64
EXOSC3-202ENST00000396521 MGPP08493 103 aa11.03□□□□□ -0.64
EXOSC3-202ENST00000396521 SUMO4Q6EEV6 95 aa11.03□□□□□ -0.64
EXOSC3-202ENST00000396521 GTSF1Q8WW33 167 aa11.03□□□□□ -0.64
EXOSC3-202ENST00000396521 NIT2Q9NQR4 276 aa11.03□□□□□ -0.64
EXOSC3-202ENST00000396521 XKRY2A2RUG3 117 aa11.02□□□□□ -0.65
EXOSC3-202ENST00000396521 TRGC1P0CF51 173 aa11.02□□□□□ -0.65
EXOSC3-202ENST00000396521 SRSF3P84103 164 aaKnown RBP11.02□□□□□ -0.65
EXOSC3-202ENST00000396521 COX6A2Q02221 97 aa11.02□□□□□ -0.65
EXOSC3-202ENST00000396521 COTL1Q14019 142 aa11.02□□□□□ -0.65
EXOSC3-202ENST00000396521 REG3GQ6UW15 175 aa11.02□□□□□ -0.65
EXOSC3-202ENST00000396521 FER1L6-AS1Q8NA97 138 aa11.02□□□□□ -0.65
EXOSC3-202ENST00000396521 IGLC6P0CF74 106 aa11.01□□□□□ -0.65
EXOSC3-202ENST00000396521 PRR3P79522 188 aaKnown RBP11.01□□□□□ -0.65
EXOSC3-202ENST00000396521 A0A0J9YXV3 536 aa11□□□□□ -0.65
EXOSC3-202ENST00000396521 AMTP48728 403 aa11□□□□□ -0.65
EXOSC3-202ENST00000396521 MAJINQ3KP22 176 aa11□□□□□ -0.65
EXOSC3-202ENST00000396521 FAM74A3Q4VXF1 159 aa11□□□□□ -0.65
EXOSC3-202ENST00000396521 SPINK6Q6UWN8 80 aa11□□□□□ -0.65
EXOSC3-202ENST00000396521 C15orf56Q8N910 161 aa11□□□□□ -0.65
EXOSC3-202ENST00000396521 TPPP3Q9BW30 176 aa11□□□□□ -0.65
EXOSC3-202ENST00000396521 GFRA4Q9GZZ7 299 aa11□□□□□ -0.65
EXOSC3-202ENST00000396521 TNXBP22105 4242 aa11□□□□□ -0.65
EXOSC3-202ENST00000396521 GAGE12HA6NDE8 117 aa10.99□□□□□ -0.65
EXOSC3-202ENST00000396521 C9JQL5 133 aa10.99□□□□□ -0.65
EXOSC3-202ENST00000396521 OR2D3Q8NGH3 330 aa10.99□□□□□ -0.65
EXOSC3-202ENST00000396521 K7EN84 100 aa10.98□□□□□ -0.65
EXOSC3-202ENST00000396521 STPG4Q8N801 248 aa10.98□□□□□ -0.65
EXOSC3-202ENST00000396521 OCC1Q8TAD7 63 aa10.98□□□□□ -0.65
EXOSC3-202ENST00000396521 GVQW2A0A096LPI5 108 aaPredicted RBP10.97□□□□□ -0.65
EXOSC3-202ENST00000396521 C19orf71A6NCJ1 209 aa10.97□□□□□ -0.65
EXOSC3-202ENST00000396521 H7C423 109 aa10.97□□□□□ -0.65
EXOSC3-202ENST00000396521 KRTAP10-8P60410 259 aa10.97□□□□□ -0.65
EXOSC3-202ENST00000396521 ADIRFQ15847 76 aa10.97□□□□□ -0.65
EXOSC3-202ENST00000396521 LINC01551Q86U37 167 aa10.97□□□□□ -0.65
EXOSC3-202ENST00000396521 COMMD7Q86VX2 200 aa10.97□□□□□ -0.65
EXOSC3-202ENST00000396521 PRSS3P2Q8NHM4 247 aa10.97□□□□□ -0.65
EXOSC3-202ENST00000396521 RPP21Q9H633 154 aaKnown RBP10.97□□□□□ -0.65
EXOSC3-202ENST00000396521 NAT8Q9UHE5 227 aa10.97□□□□□ -0.65
EXOSC3-202ENST00000396521 IGKV2-24A0A0C4DH68 120 aa10.96□□□□□ -0.65
EXOSC3-202ENST00000396521 TMEM241Q24JQ0 296 aa10.96□□□□□ -0.65
EXOSC3-202ENST00000396521 RNASE7Q9H1E1 156 aaKnown RBP10.96□□□□□ -0.65
EXOSC3-202ENST00000396521 NCR2O95944 276 aa10.95□□□□□ -0.66
EXOSC3-202ENST00000396521 AMMECR1LQ6DCA0 310 aa10.95□□□□□ -0.66
EXOSC3-202ENST00000396521 UQCC3Q6UW78 93 aa10.95□□□□□ -0.66
EXOSC3-202ENST00000396521 RNF213Q63HN8 5207 aa10.95□□□□□ -0.66
EXOSC3-202ENST00000396521 GATCO43716 136 aaKnown RBP10.94□□□□□ -0.66
EXOSC3-202ENST00000396521 NTF3P20783 257 aa10.94□□□□□ -0.66
EXOSC3-202ENST00000396521 NUDT10Q8NFP7 164 aa10.94□□□□□ -0.66
EXOSC3-202ENST00000396521 CHCHD10Q8WYQ3 142 aaPredicted RBP10.94□□□□□ -0.66
EXOSC3-202ENST00000396521 NUDT11Q96G61 164 aa10.94□□□□□ -0.66
EXOSC3-202ENST00000396521 HIGD2BQ4VC39 106 aa10.93□□□□□ -0.66
EXOSC3-202ENST00000396521 Q6ZRP5 223 aa10.93□□□□□ -0.66
EXOSC3-202ENST00000396521 FAM231DQ6ZW35 169 aa10.93□□□□□ -0.66
EXOSC3-202ENST00000396521 RPL23P62829 140 aaKnown RBP10.92□□□□□ -0.66
EXOSC3-202ENST00000396521 LYZL1Q6UWQ5 148 aa10.92□□□□□ -0.66
EXOSC3-202ENST00000396521 IGKV3OR2-268A0A0C4DH90 116 aa10.91□□□□□ -0.66
EXOSC3-202ENST00000396521 ZNF25P17030 456 aaPredicted RBP10.91□□□□□ -0.66
EXOSC3-202ENST00000396521 SRSF9Q13242 221 aaKnown RBP eCLIP10.91□□□□□ -0.66
EXOSC3-202ENST00000396521 ISOC2Q96AB3 205 aa10.91□□□□□ -0.66
EXOSC3-202ENST00000396521 CNFNQ9BYD5 112 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 188.7 ms