RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 IGHV3-30P01768 117 aa8.67□□□□□ -1.02
PTPRF-203ENST00000372407 IGHV3-33P01772 117 aa8.67□□□□□ -1.02
PTPRF-203ENST00000372407 IGHV3-30-5P0DP03 117 aa8.67□□□□□ -1.02
PTPRF-203ENST00000372407 DSCAMO60469 2012 aa8.67□□□□□ -1.02
PTPRF-203ENST00000372407 SPAG11BQ08648 103 aa8.67□□□□□ -1.02
PTPRF-203ENST00000372407 NREPQ16612 68 aa8.67□□□□□ -1.02
PTPRF-203ENST00000372407 TMEM263Q8WUH6 116 aaKnown RBP8.67□□□□□ -1.02
PTPRF-203ENST00000372407 EPG5Q9HCE0 2579 aa8.67□□□□□ -1.02
PTPRF-203ENST00000372407 TNFRSF13BO14836 293 aaPredicted RBP8.66□□□□□ -1.02
PTPRF-203ENST00000372407 RPL18AQ02543 176 aaKnown RBP8.66□□□□□ -1.02
PTPRF-203ENST00000372407 CLEC2BQ92478 149 aa8.66□□□□□ -1.02
PTPRF-203ENST00000372407 C1orf229Q6ZS94 237 aaPredicted RBP8.66□□□□□ -1.02
PTPRF-203ENST00000372407 PRO0255Q9UI72 69 aa8.66□□□□□ -1.02
PTPRF-203ENST00000372407 SMIM20Q8N5G0 67 aa8.66□□□□□ -1.02
PTPRF-203ENST00000372407 ABCA12Q86UK0 2595 aa8.66□□□□□ -1.02
PTPRF-203ENST00000372407 USP9YO00507 2555 aaPredicted RBP8.66□□□□□ -1.02
PTPRF-203ENST00000372407 LINC01548A6NM66 108 aa8.66□□□□□ -1.02
PTPRF-203ENST00000372407 MRAPQ8TCY5 172 aa8.66□□□□□ -1.02
PTPRF-203ENST00000372407 PKIGQ9Y2B9 76 aa8.65□□□□□ -1.02
PTPRF-203ENST00000372407 PSMB8P28062 276 aa8.65□□□□□ -1.02
PTPRF-203ENST00000372407 FSTL3O95633 263 aa8.65□□□□□ -1.03
PTPRF-203ENST00000372407 CITED2Q99967 270 aaPredicted RBP8.65□□□□□ -1.03
PTPRF-203ENST00000372407 IGF1P05019 195 aa8.65□□□□□ -1.03
PTPRF-203ENST00000372407 CEMP1Q6PRD7 247 aaPredicted RBP8.65□□□□□ -1.03
PTPRF-203ENST00000372407 Q6ZUT4 128 aa8.65□□□□□ -1.03
PTPRF-203ENST00000372407 C4orf3Q8WVX3 66 aa8.65□□□□□ -1.03
PTPRF-203ENST00000372407 KLK12Q9UKR0 248 aa8.65□□□□□ -1.03
PTPRF-203ENST00000372407 MIAQ16674 131 aa8.64□□□□□ -1.03
PTPRF-203ENST00000372407 DEFB135Q30KP9 77 aa8.64□□□□□ -1.03
PTPRF-203ENST00000372407 ODF3Q96PU9 254 aa8.64□□□□□ -1.03
PTPRF-203ENST00000372407 C22orf34Q6ZV56 151 aa8.64□□□□□ -1.03
PTPRF-203ENST00000372407 TM2D2Q9BX73 214 aa8.63□□□□□ -1.03
PTPRF-203ENST00000372407 IGHV4-28A0A0C4DH34 117 aa8.63□□□□□ -1.03
PTPRF-203ENST00000372407 K7EQG2 157 aa8.63□□□□□ -1.03
PTPRF-203ENST00000372407 YPEL4Q96NS1 127 aa8.63□□□□□ -1.03
PTPRF-203ENST00000372407 MAP6D1Q9H9H5 199 aa8.63□□□□□ -1.03
PTPRF-203ENST00000372407 COL5A1P20908 1838 aaPredicted RBP8.63□□□□□ -1.03
PTPRF-203ENST00000372407 A0A0J9YXY3 114 aa8.63□□□□□ -1.03
PTPRF-203ENST00000372407 PLA2G2AP14555 144 aa8.63□□□□□ -1.03
PTPRF-203ENST00000372407 DIRC1Q969H9 104 aa8.63□□□□□ -1.03
PTPRF-203ENST00000372407 TANC2Q9HCD6 1990 aa8.63□□□□□ -1.03
PTPRF-203ENST00000372407 NDUFS5O43920 106 aa8.63□□□□□ -1.03
PTPRF-203ENST00000372407 CLPSL1A2RUU4 121 aa8.62□□□□□ -1.03
PTPRF-203ENST00000372407 TMEM256-PLSCR3K7ERE1 68 aa8.62□□□□□ -1.03
PTPRF-203ENST00000372407 CRYGBP07316 175 aa8.62□□□□□ -1.03
PTPRF-203ENST00000372407 EBI3Q14213 229 aa8.62□□□□□ -1.03
PTPRF-203ENST00000372407 LINC00643Q86TS7 51 aa8.62□□□□□ -1.03
PTPRF-203ENST00000372407 TCL1BO95988 128 aa8.62□□□□□ -1.03
PTPRF-203ENST00000372407 TIRAPP58753 221 aa8.62□□□□□ -1.03
PTPRF-203ENST00000372407 FN1P02751 2386 aaKnown RBP8.62□□□□□ -1.03
PTPRF-203ENST00000372407 PDE6GP18545 87 aa8.61□□□□□ -1.03
PTPRF-203ENST00000372407 TP53TG3Q9ULZ0 132 aa8.61□□□□□ -1.03
PTPRF-203ENST00000372407 NDUFB1O75438 58 aa8.61□□□□□ -1.03
PTPRF-203ENST00000372407 INSL3P51460 131 aa8.61□□□□□ -1.03
PTPRF-203ENST00000372407 HIST2H2BDQ6DRA6 164 aa8.61□□□□□ -1.03
PTPRF-203ENST00000372407 NEXN-AS1Q8NBZ9 246 aa8.61□□□□□ -1.03
PTPRF-203ENST00000372407 MP68P56378 58 aa8.61□□□□□ -1.03
PTPRF-203ENST00000372407 NFE4Q86UQ8 179 aa8.61□□□□□ -1.03
PTPRF-203ENST00000372407 PKD1L2Q7Z442 2459 aa8.61□□□□□ -1.03
PTPRF-203ENST00000372407 RANBP2P49792 3224 aaKnown RBP8.61□□□□□ -1.03
PTPRF-203ENST00000372407 C19orf84I3L1E1 186 aa8.61□□□□□ -1.03
PTPRF-203ENST00000372407 NCR3O14931 201 aa8.6□□□□□ -1.03
PTPRF-203ENST00000372407 DEFB4AO15263 64 aa8.6□□□□□ -1.03
PTPRF-203ENST00000372407 P0DMU3 169 aa8.6□□□□□ -1.03
PTPRF-203ENST00000372407 FAM231AP0DMU4 169 aa8.6□□□□□ -1.03
PTPRF-203ENST00000372407 FAM231CP0DMU5 169 aa8.6□□□□□ -1.03
PTPRF-203ENST00000372407 CRIP1P50238 77 aa8.6□□□□□ -1.03
PTPRF-203ENST00000372407 CDKN2A-AS1Q9UH64 79 aa8.6□□□□□ -1.03
PTPRF-203ENST00000372407 HIGD2BQ4VC39 106 aa8.6□□□□□ -1.03
PTPRF-203ENST00000372407 Q6ZTI0 123 aa8.6□□□□□ -1.03
PTPRF-203ENST00000372407 KIAA1549Q9HCM3 1950 aa8.6□□□□□ -1.03
PTPRF-203ENST00000372407 HCFC1P51610 2035 aa8.6□□□□□ -1.03
PTPRF-203ENST00000372407 ZFAND3Q9H8U3 227 aa8.6□□□□□ -1.03
PTPRF-203ENST00000372407 ZFAND2AQ8N6M9 145 aa8.59□□□□□ -1.03
PTPRF-203ENST00000372407 ZNF22P17026 224 aaPredicted RBP8.59□□□□□ -1.03
PTPRF-203ENST00000372407 LY6LH3BQJ8 138 aa8.58□□□□□ -1.04
PTPRF-203ENST00000372407 IGKV2D-26A0A0A0MRZ7 120 aa8.58□□□□□ -1.04
PTPRF-203ENST00000372407 ARHGAP32A7KAX9 2087 aa8.58□□□□□ -1.04
PTPRF-203ENST00000372407 IGLV4-3A0A075B6K6 122 aa8.58□□□□□ -1.04
PTPRF-203ENST00000372407 TRAV26-1A0A087WT03 109 aa8.58□□□□□ -1.04
PTPRF-203ENST00000372407 LRP4O75096 1905 aa8.58□□□□□ -1.04
PTPRF-203ENST00000372407 TP73-AS1Q9UF72 201 aa8.57□□□□□ -1.04
PTPRF-203ENST00000372407 J3KT08 172 aa8.57□□□□□ -1.04
PTPRF-203ENST00000372407 SMAD5-AS1Q9Y6J3 95 aa8.57□□□□□ -1.04
PTPRF-203ENST00000372407 C14orf132Q9NPU4 83 aa8.57□□□□□ -1.04
PTPRF-203ENST00000372407 DEFB114Q30KQ6 69 aa8.56□□□□□ -1.04
PTPRF-203ENST00000372407 UFSP1Q6NVU6 142 aa8.56□□□□□ -1.04
PTPRF-203ENST00000372407 LINC00467Q9BRT7 94 aa8.56□□□□□ -1.04
PTPRF-203ENST00000372407 ZNF462Q96JM2 2506 aa8.56□□□□□ -1.04
PTPRF-203ENST00000372407 F8W735 103 aaPredicted RBP8.56□□□□□ -1.04
PTPRF-203ENST00000372407 MAPKAPK5-AS1Q8N8E1 139 aa8.56□□□□□ -1.04
PTPRF-203ENST00000372407 C20orf173Q96LM9 149 aa8.56□□□□□ -1.04
PTPRF-203ENST00000372407 SPANXB1Q9NS25 103 aaPredicted RBP8.56□□□□□ -1.04
PTPRF-203ENST00000372407 DNAJC9-AS1A6NH13 148 aa8.56□□□□□ -1.04
PTPRF-203ENST00000372407 RNF185Q96GF1 192 aa8.56□□□□□ -1.04
PTPRF-203ENST00000372407 U3KQK5 164 aa8.56□□□□□ -1.04
PTPRF-203ENST00000372407 ATG2AQ2TAZ0 1938 aa8.55□□□□□ -1.04
PTPRF-203ENST00000372407 M0QY20 66 aa8.55□□□□□ -1.04
PTPRF-203ENST00000372407 COX7BP24311 80 aa8.55□□□□□ -1.04
PTPRF-203ENST00000372407 IGLV2-11P01706 119 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms