RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 DAZ4Q86SG3 579 aaKnown RBP13.14□□□□□ -0.31
CLN3-204ENST00000357857 IFI27L1Q96BM0 104 aa13.14□□□□□ -0.31
CLN3-204ENST00000357857 DAZ3Q9NR90 486 aaKnown RBP13.14□□□□□ -0.31
CLN3-204ENST00000357857 CYSLTR1Q9Y271 337 aa13.14□□□□□ -0.31
CLN3-204ENST00000357857 SYS1-DBNDD2H3BUS1 97 aa13.13□□□□□ -0.31
CLN3-204ENST00000357857 COTL1Q14019 142 aa13.13□□□□□ -0.31
CLN3-204ENST00000357857 C12orf74Q32Q52 190 aa13.13□□□□□ -0.31
CLN3-204ENST00000357857 C12orf57Q99622 126 aa13.13□□□□□ -0.31
CLN3-204ENST00000357857 ATP5LO75964 103 aa13.13□□□□□ -0.31
CLN3-204ENST00000357857 LINC01549A6NIU2 74 aa13.12□□□□□ -0.31
CLN3-204ENST00000357857 Q8N976 141 aa13.12□□□□□ -0.31
CLN3-204ENST00000357857 SCGB3A1Q96QR1 104 aa13.12□□□□□ -0.31
CLN3-204ENST00000357857 ZMAT4Q9H898 229 aa13.12□□□□□ -0.31
CLN3-204ENST00000357857 F5H768 121 aa13.11□□□□□ -0.31
CLN3-204ENST00000357857 H0Y8G0 127 aa13.11□□□□□ -0.31
CLN3-204ENST00000357857 PAX4O43316 350 aa13.11□□□□□ -0.31
CLN3-204ENST00000357857 LINC00694P0DN24 101 aa13.11□□□□□ -0.31
CLN3-204ENST00000357857 GYPEP15421 78 aa13.11□□□□□ -0.31
CLN3-204ENST00000357857 HTN3P15516 51 aa13.11□□□□□ -0.31
CLN3-204ENST00000357857 RPL39P62891 51 aaKnown RBP13.1□□□□□ -0.31
CLN3-204ENST00000357857 PET117Q6UWS5 81 aa13.1□□□□□ -0.31
CLN3-204ENST00000357857 SPATA12Q7Z6I5 190 aa13.1□□□□□ -0.31
CLN3-204ENST00000357857 C20orf203Q8NBC4 194 aa13.1□□□□□ -0.31
CLN3-204ENST00000357857 TENM3Q9P273 2699 aa13.1□□□□□ -0.31
CLN3-204ENST00000357857 CDPF1Q6NVV7 123 aa13.1□□□□□ -0.31
CLN3-204ENST00000357857 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP13.09□□□□□ -0.31
CLN3-204ENST00000357857 ERASQ7Z444 233 aa13.09□□□□□ -0.31
CLN3-204ENST00000357857 CHCHD7Q9BUK0 85 aa13.09□□□□□ -0.31
CLN3-204ENST00000357857 C20orf202A1L168 122 aa13.08□□□□□ -0.32
CLN3-204ENST00000357857 VSIG2Q96IQ7 327 aa13.08□□□□□ -0.32
CLN3-204ENST00000357857 B9D2Q9BPU9 175 aa13.08□□□□□ -0.32
CLN3-204ENST00000357857 A0A0J9YY99 117 aa13.08□□□□□ -0.32
CLN3-204ENST00000357857 C11orf45Q8TAV5 145 aa13.08□□□□□ -0.32
CLN3-204ENST00000357857 TRAV26-1A0A087WT03 109 aa13.07□□□□□ -0.32
CLN3-204ENST00000357857 PRSS1P07477 247 aa13.07□□□□□ -0.32
CLN3-204ENST00000357857 GTSF1LQ9H1H1 148 aa13.07□□□□□ -0.32
CLN3-204ENST00000357857 IGIPA6NJ69 53 aa13.06□□□□□ -0.32
CLN3-204ENST00000357857 LINC01545Q5VT33 79 aa13.06□□□□□ -0.32
CLN3-204ENST00000357857 Q6ZN92 141 aa13.06□□□□□ -0.32
CLN3-204ENST00000357857 NTM-AS1Q6ZSK4 140 aa13.06□□□□□ -0.32
CLN3-204ENST00000357857 Q6ZTC4 211 aa13.06□□□□□ -0.32
CLN3-204ENST00000357857 TIMM17AQ99595 171 aa13.06□□□□□ -0.32
CLN3-204ENST00000357857 FBN3Q75N90 2809 aa13.05□□□□□ -0.32
CLN3-204ENST00000357857 NANOS2P60321 138 aaKnown RBP13.05□□□□□ -0.32
CLN3-204ENST00000357857 ATP6V0E2Q8NHE4 81 aa13.05□□□□□ -0.32
CLN3-204ENST00000357857 TMEM141Q96I45 108 aa13.05□□□□□ -0.32
CLN3-204ENST00000357857 LGALS9CQ6DKI2 356 aa13.05□□□□□ -0.32
CLN3-204ENST00000357857 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.04□□□□□ -0.32
CLN3-204ENST00000357857 IGKV2-29A2NJV5 120 aaPredicted RBP13.04□□□□□ -0.32
CLN3-204ENST00000357857 TMEM97Q5BJF2 176 aa13.04□□□□□ -0.32
CLN3-204ENST00000357857 TEX43Q6ZNM6 134 aa13.03□□□□□ -0.32
CLN3-204ENST00000357857 BAALCQ8WXS3 180 aa13.03□□□□□ -0.32
CLN3-204ENST00000357857 HUWE1Q7Z6Z7 4374 aaKnown RBP13.03□□□□□ -0.32
CLN3-204ENST00000357857 S100A12P80511 92 aa13.02□□□□□ -0.32
CLN3-204ENST00000357857 PMCHL2Q9BQD1 86 aa13.02□□□□□ -0.32
CLN3-204ENST00000357857 PYGO1Q9Y3Y4 419 aa13.02□□□□□ -0.32
CLN3-204ENST00000357857 TRBV25-1A0A075B6N4 114 aa13.02□□□□□ -0.33
CLN3-204ENST00000357857 ATOH7Q8N100 152 aa13.02□□□□□ -0.33
CLN3-204ENST00000357857 TMEM243Q9BU79 118 aa13.02□□□□□ -0.33
CLN3-204ENST00000357857 TRAV12-1A0A0B4J245 112 aa13.01□□□□□ -0.33
CLN3-204ENST00000357857 ODF1Q14990 250 aa13.01□□□□□ -0.33
CLN3-204ENST00000357857 MRPL23Q16540 153 aaKnown RBP13.01□□□□□ -0.33
CLN3-204ENST00000357857 SPANXA1Q9NS26 97 aa13.01□□□□□ -0.33
CLN3-204ENST00000357857 UBE2D4Q9Y2X8 147 aa13.01□□□□□ -0.33
CLN3-204ENST00000357857 ICOSQ9Y6W8 199 aa13.01□□□□□ -0.33
CLN3-204ENST00000357857 A0A096LPF7 62 aa13□□□□□ -0.33
CLN3-204ENST00000357857 TRBV6-8A0A0A6YYG3 113 aa13□□□□□ -0.33
CLN3-204ENST00000357857 A0A087WX48 190 aa12.99□□□□□ -0.33
CLN3-204ENST00000357857 DEFA6Q01524 100 aa12.99□□□□□ -0.33
CLN3-204ENST00000357857 OPRPNQ99935 248 aaPredicted RBP12.99□□□□□ -0.33
CLN3-204ENST00000357857 IGLV4-3A0A075B6K6 122 aa12.99□□□□□ -0.33
CLN3-204ENST00000357857 DEFB131BA0A096LNP1 70 aa12.99□□□□□ -0.33
CLN3-204ENST00000357857 H3BNG1 76 aa12.99□□□□□ -0.33
CLN3-204ENST00000357857 CEMP1Q6PRD7 247 aaPredicted RBP12.99□□□□□ -0.33
CLN3-204ENST00000357857 SH2D6Q7Z4S9 175 aa12.99□□□□□ -0.33
CLN3-204ENST00000357857 VAMP8Q9BV40 100 aa12.99□□□□□ -0.33
CLN3-204ENST00000357857 TIMM21Q9BVV7 248 aa12.99□□□□□ -0.33
CLN3-204ENST00000357857 UBE2L6O14933 153 aa12.98□□□□□ -0.33
CLN3-204ENST00000357857 NPSP0C0P6 89 aa12.98□□□□□ -0.33
CLN3-204ENST00000357857 PMVKQ15126 192 aa12.98□□□□□ -0.33
CLN3-204ENST00000357857 PRSS29PA6NIE9 313 aa12.97□□□□□ -0.33
CLN3-204ENST00000357857 H7C423 109 aa12.97□□□□□ -0.33
CLN3-204ENST00000357857 SMAGPQ0VAQ4 97 aa12.97□□□□□ -0.33
CLN3-204ENST00000357857 PAPPA-AS1Q5QFB9 102 aa12.97□□□□□ -0.33
CLN3-204ENST00000357857 NHLRC4P0CG21 123 aaPredicted RBP12.96□□□□□ -0.33
CLN3-204ENST00000357857 FGF6P10767 208 aa12.96□□□□□ -0.33
CLN3-204ENST00000357857 ZC2HC1BQ5TFG8 222 aa12.96□□□□□ -0.33
CLN3-204ENST00000357857 CST9LQ9H4G1 147 aa12.96□□□□□ -0.33
CLN3-204ENST00000357857 MRPL35Q9NZE8 188 aaKnown RBP12.96□□□□□ -0.33
CLN3-204ENST00000357857 CHTOPQ9Y3Y2 248 aaKnown RBP12.96□□□□□ -0.33
CLN3-204ENST00000357857 DNAH9Q9NYC9 4486 aa12.96□□□□□ -0.33
CLN3-204ENST00000357857 TRAV10A0A0B4J240 114 aa12.96□□□□□ -0.34
CLN3-204ENST00000357857 DGAT2L7PQ6IED9 249 aa12.96□□□□□ -0.34
CLN3-204ENST00000357857 MRPL52Q86TS9 123 aaKnown RBP12.96□□□□□ -0.34
CLN3-204ENST00000357857 FAM104AQ969W3 186 aa12.96□□□□□ -0.34
CLN3-204ENST00000357857 VCX2Q9H322 139 aa12.96□□□□□ -0.34
CLN3-204ENST00000357857 TRAV9-2A0A087WT02 112 aa12.95□□□□□ -0.34
CLN3-204ENST00000357857 F8VRH5 84 aa12.95□□□□□ -0.34
CLN3-204ENST00000357857 DPM2O94777 84 aa12.95□□□□□ -0.34
CLN3-204ENST00000357857 CHCHD5Q9BSY4 110 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 153.9 ms