RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 IGKV3-20P01619 116 aa4.97□□□□□ -1.61
VPS39-202ENST00000348544 ACYP1P07311 99 aa4.97□□□□□ -1.61
VPS39-202ENST00000348544 PF4V1P10720 104 aa4.97□□□□□ -1.61
VPS39-202ENST00000348544 LINC00643Q86TS7 51 aa4.97□□□□□ -1.61
VPS39-202ENST00000348544 LINC00526Q96FQ7 95 aa4.97□□□□□ -1.61
VPS39-202ENST00000348544 Q9UF83 564 aa4.97□□□□□ -1.61
VPS39-202ENST00000348544 UQCRQO14949 82 aa4.96□□□□□ -1.62
VPS39-202ENST00000348544 NPFFO15130 113 aa4.96□□□□□ -1.62
VPS39-202ENST00000348544 PROK1P58294 105 aa4.96□□□□□ -1.62
VPS39-202ENST00000348544 BEAN1Q3B7T3 259 aa4.96□□□□□ -1.62
VPS39-202ENST00000348544 Q8N2B8 174 aa4.96□□□□□ -1.62
VPS39-202ENST00000348544 IGHV3-73A0A0B4J1V6 119 aa4.96□□□□□ -1.62
VPS39-202ENST00000348544 TINCRA0A1B0GVN0 87 aa4.96□□□□□ -1.62
VPS39-202ENST00000348544 MOB4Q9Y3A3 225 aa4.96□□□□□ -1.62
VPS39-202ENST00000348544 IGHV3OR16-10A0A075B7F0 116 aa4.95□□□□□ -1.62
VPS39-202ENST00000348544 COX7A2LO14548 114 aa4.95□□□□□ -1.62
VPS39-202ENST00000348544 TIMM17BO60830 172 aa4.95□□□□□ -1.62
VPS39-202ENST00000348544 DAZ2Q13117 558 aaKnown RBP4.95□□□□□ -1.62
VPS39-202ENST00000348544 DAZ4Q86SG3 579 aaKnown RBP4.95□□□□□ -1.62
VPS39-202ENST00000348544 C5orf38Q86SI9 138 aa4.95□□□□□ -1.62
VPS39-202ENST00000348544 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.95□□□□□ -1.62
VPS39-202ENST00000348544 C2orf48Q96LS8 159 aa4.95□□□□□ -1.62
VPS39-202ENST00000348544 DAZ1Q9NQZ3 744 aaKnown RBP4.95□□□□□ -1.62
VPS39-202ENST00000348544 DAZ3Q9NR90 486 aaKnown RBP4.95□□□□□ -1.62
VPS39-202ENST00000348544 CELSR1Q9NYQ6 3014 aa4.95□□□□□ -1.62
VPS39-202ENST00000348544 IGHV1OR15-1A0A075B7D0 117 aa4.95□□□□□ -1.62
VPS39-202ENST00000348544 CYSTM1Q9H1C7 97 aa4.95□□□□□ -1.62
VPS39-202ENST00000348544 CDKN2A-AS1Q9UH64 79 aa4.95□□□□□ -1.62
VPS39-202ENST00000348544 ATP5J2P56134 94 aa4.94□□□□□ -1.62
VPS39-202ENST00000348544 SPINK13Q1W4C9 94 aa4.94□□□□□ -1.62
VPS39-202ENST00000348544 SOSTDC1Q6X4U4 206 aa4.94□□□□□ -1.62
VPS39-202ENST00000348544 DEFB123Q8N688 67 aa4.94□□□□□ -1.62
VPS39-202ENST00000348544 LINC00308Q8TCZ7 52 aa4.94□□□□□ -1.62
VPS39-202ENST00000348544 CHCHD7Q9BUK0 85 aa4.94□□□□□ -1.62
VPS39-202ENST00000348544 UBE2D4Q9Y2X8 147 aa4.94□□□□□ -1.62
VPS39-202ENST00000348544 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.94□□□□□ -1.62
VPS39-202ENST00000348544 A0A1W2PPR1 153 aa4.94□□□□□ -1.62
VPS39-202ENST00000348544 IGKV2-29A2NJV5 120 aaPredicted RBP4.94□□□□□ -1.62
VPS39-202ENST00000348544 NDUFA1O15239 70 aa4.94□□□□□ -1.62
VPS39-202ENST00000348544 FBXL19-AS1Q494R0 122 aa4.94□□□□□ -1.62
VPS39-202ENST00000348544 FAM218AQ96MZ4 157 aa4.94□□□□□ -1.62
VPS39-202ENST00000348544 PTPRZ1P23471 2315 aaPredicted RBP4.94□□□□□ -1.62
VPS39-202ENST00000348544 DOPEY2Q9Y3R5 2298 aa4.94□□□□□ -1.62
VPS39-202ENST00000348544 A0A0U1RRA0 63 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 COX7CP15954 63 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 TIRAPP58753 221 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 Q6ZSN1 163 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 FAM19A5Q7Z5A7 132 aaPredicted RBP4.93□□□□□ -1.62
VPS39-202ENST00000348544 PEMTQ9UBM1 199 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 ZNF292O60281 2723 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 CCL21O00585 134 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 AVPP01185 164 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 BAALC-AS2P0C853 105 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 RBMY1A1P0DJD3 496 aaKnown RBP4.93□□□□□ -1.62
VPS39-202ENST00000348544 RBMY1CP0DJD4 496 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 LMO4P61968 165 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 HIST1H4AP62805 103 aaKnown RBP4.93□□□□□ -1.62
VPS39-202ENST00000348544 COX6A2Q02221 97 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 RBMY1FQ15415 496 aaKnown RBP4.93□□□□□ -1.62
VPS39-202ENST00000348544 LRRC75A-AS1Q8N1F1 130 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 ZNF625Q96I27 306 aaPredicted RBP4.93□□□□□ -1.62
VPS39-202ENST00000348544 USMG5Q96IX5 58 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 LINC00467Q9BRT7 94 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 EDA2RQ9HAV5 297 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 NACAE9PAV3 2078 aa4.93□□□□□ -1.62
VPS39-202ENST00000348544 ABCA2Q9BZC7 2435 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 KNCNA6PVL3 124 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 J3KT08 172 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 ATP5G1P05496 136 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 CXCL5P42830 114 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 BRD3OSQ6XYD6 125 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 UBTD1Q9HAC8 227 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 NBASA2RRP1 2371 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 COL6A6A6NMZ7 2263 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 IGLV5-45A0A087WSX0 123 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 A0A1B0GX51 115 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 SMIM9A6NGZ8 99 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 TRACP01848 142 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 PRM2P04554 102 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 CRYGAP11844 174 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 LY6EQ16553 131 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 Q9H8V8 135 aa4.92□□□□□ -1.62
VPS39-202ENST00000348544 SPTAN1Q13813 2472 aaKnown RBP4.92□□□□□ -1.62
VPS39-202ENST00000348544 hADV29S1A0JD25 119 aa4.91□□□□□ -1.62
VPS39-202ENST00000348544 BLCAPP62952 87 aa4.91□□□□□ -1.62
VPS39-202ENST00000348544 C5orf47Q569G3 176 aa4.91□□□□□ -1.62
VPS39-202ENST00000348544 SORL1Q92673 2214 aa4.91□□□□□ -1.62
VPS39-202ENST00000348544 IGHV3-38A0A0C4DH36 116 aa4.91□□□□□ -1.62
VPS39-202ENST00000348544 IGLV5-39A0A0G2JS06 123 aa4.91□□□□□ -1.62
VPS39-202ENST00000348544 H3BUA1 57 aa4.91□□□□□ -1.62
VPS39-202ENST00000348544 GAGE2AQ6NT46 116 aa4.91□□□□□ -1.62
VPS39-202ENST00000348544 BPESC1Q9GZL8 116 aa4.91□□□□□ -1.62
VPS39-202ENST00000348544 AKAP6Q13023 2319 aa4.91□□□□□ -1.62
VPS39-202ENST00000348544 K7EMT4 169 aa4.9□□□□□ -1.62
VPS39-202ENST00000348544 IGLV1-40P01703 118 aa4.9□□□□□ -1.62
VPS39-202ENST00000348544 C9orf129Q5T035 196 aaKnown RBP4.9□□□□□ -1.62
VPS39-202ENST00000348544 FAM222AQ5U5X8 452 aa4.9□□□□□ -1.62
VPS39-202ENST00000348544 Q9HAA7 133 aa4.9□□□□□ -1.62
VPS39-202ENST00000348544 TTC28Q96AY4 2481 aa4.9□□□□□ -1.62
VPS39-202ENST00000348544 SPTA1P02549 2419 aa4.9□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 84.2 ms