RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 C2orf82Q6UX34 121 aa11.77□□□□□ -0.53
HMGA1-202ENST00000347617 C20orf203Q8NBC4 194 aa11.77□□□□□ -0.53
HMGA1-202ENST00000347617 C9orf85Q96MD7 179 aa11.77□□□□□ -0.53
HMGA1-202ENST00000347617 PYGO1Q9Y3Y4 419 aa11.77□□□□□ -0.53
HMGA1-202ENST00000347617 TMEM89A2RUT3 159 aa11.76□□□□□ -0.53
HMGA1-202ENST00000347617 SPRY2O43597 315 aa11.76□□□□□ -0.53
HMGA1-202ENST00000347617 CENPEQ02224 2701 aa11.75□□□□□ -0.53
HMGA1-202ENST00000347617 I3L3M4 83 aa11.75□□□□□ -0.53
HMGA1-202ENST00000347617 ICOSQ9Y6W8 199 aa11.75□□□□□ -0.53
HMGA1-202ENST00000347617 DOPEY2Q9Y3R5 2298 aa11.75□□□□□ -0.53
HMGA1-202ENST00000347617 POLQO75417 2590 aa11.75□□□□□ -0.53
HMGA1-202ENST00000347617 M0QY20 66 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 TRIAP1O43715 76 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 CRLF1O75462 422 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 IGLV1-40P01703 118 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 ACYP1P07311 99 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 BLCAPP62952 87 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 EDA2RQ9HAV5 297 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 APCP25054 2843 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 TRBV7-7A0A0K0K1E9 115 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 H7C2G1 150 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 TIMM17BO60830 172 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 IGHV4-59P01825 116 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 CFHR3Q02985 330 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 TIMM21Q9BVV7 248 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 VPREB3Q9UKI3 123 aa11.74□□□□□ -0.53
HMGA1-202ENST00000347617 ABCA12Q86UK0 2595 aa11.73□□□□□ -0.53
HMGA1-202ENST00000347617 TENM4Q6N022 2769 aa11.73□□□□□ -0.53
HMGA1-202ENST00000347617 TEX49A0A1B0GTD5 131 aa11.73□□□□□ -0.53
HMGA1-202ENST00000347617 CCDC179H3BU77 68 aa11.73□□□□□ -0.53
HMGA1-202ENST00000347617 IMUPQ9GZP8 106 aa11.73□□□□□ -0.53
HMGA1-202ENST00000347617 TMEM126AQ9H061 195 aa11.73□□□□□ -0.53
HMGA1-202ENST00000347617 IGLV4-3A0A075B6K6 122 aa11.72□□□□□ -0.53
HMGA1-202ENST00000347617 K7EMT4 169 aa11.72□□□□□ -0.53
HMGA1-202ENST00000347617 ZNF56Q15929 161 aa11.72□□□□□ -0.53
HMGA1-202ENST00000347617 UNQ9165/PRO28630Q6UXU0 137 aa11.72□□□□□ -0.53
HMGA1-202ENST00000347617 ZNF256Q9Y2P7 627 aaPredicted RBP11.72□□□□□ -0.53
HMGA1-202ENST00000347617 VPS13CQ709C8 3753 aa11.72□□□□□ -0.53
HMGA1-202ENST00000347617 CSPG4Q6UVK1 2322 aa11.72□□□□□ -0.53
HMGA1-202ENST00000347617 A0A087WWL8 130 aa11.72□□□□□ -0.53
HMGA1-202ENST00000347617 IGHV3-16A0A0C4DH30 117 aa11.72□□□□□ -0.53
HMGA1-202ENST00000347617 H7C423 109 aa11.72□□□□□ -0.53
HMGA1-202ENST00000347617 IGHV3-30-3P0DP02 117 aa11.72□□□□□ -0.53
HMGA1-202ENST00000347617 RPL11P62913 178 aaKnown RBP11.72□□□□□ -0.53
HMGA1-202ENST00000347617 MIAQ16674 131 aa11.72□□□□□ -0.53
HMGA1-202ENST00000347617 WFDC11Q8NEX6 87 aa11.72□□□□□ -0.53
HMGA1-202ENST00000347617 LITAFQ99732 161 aa11.72□□□□□ -0.53
HMGA1-202ENST00000347617 LST1O00453 97 aa11.71□□□□□ -0.54
HMGA1-202ENST00000347617 MRPS36P82909 103 aaKnown RBP11.71□□□□□ -0.54
HMGA1-202ENST00000347617 CFAP161Q6P656 301 aa11.71□□□□□ -0.54
HMGA1-202ENST00000347617 TMEM86BQ8N661 226 aa11.71□□□□□ -0.54
HMGA1-202ENST00000347617 RHPN1-AS1Q9BWJ2 59 aa11.71□□□□□ -0.54
HMGA1-202ENST00000347617 JPT2Q9H910 190 aa11.71□□□□□ -0.54
HMGA1-202ENST00000347617 FASNP49327 2511 aaKnown RBP11.7□□□□□ -0.54
HMGA1-202ENST00000347617 IGHV1-58A0A0C4DH39 117 aa11.7□□□□□ -0.54
HMGA1-202ENST00000347617 A0A0J9YXV3 536 aa11.7□□□□□ -0.54
HMGA1-202ENST00000347617 F6UB75 175 aa11.7□□□□□ -0.54
HMGA1-202ENST00000347617 HIST2H2BCQ6DN03 193 aa11.7□□□□□ -0.54
HMGA1-202ENST00000347617 DAZ1Q9NQZ3 744 aaKnown RBP11.7□□□□□ -0.54
HMGA1-202ENST00000347617 TMEM101Q96IK0 257 aa11.69□□□□□ -0.54
HMGA1-202ENST00000347617 LINC00527Q9UJ94 153 aa11.69□□□□□ -0.54
HMGA1-202ENST00000347617 CREBBPQ92793 2442 aa11.69□□□□□ -0.54
HMGA1-202ENST00000347617 HELZ2Q9BYK8 2649 aaKnown RBP11.69□□□□□ -0.54
HMGA1-202ENST00000347617 ELANEP08246 267 aa11.69□□□□□ -0.54
HMGA1-202ENST00000347617 MAP1AP78559 2803 aaPredicted RBP11.67□□□□□ -0.54
HMGA1-202ENST00000347617 TINCRA0A1B0GVN0 87 aa11.67□□□□□ -0.54
HMGA1-202ENST00000347617 PSMB8P28062 276 aa11.67□□□□□ -0.54
HMGA1-202ENST00000347617 FAM74A4Q5TZK3 123 aa11.67□□□□□ -0.54
HMGA1-202ENST00000347617 Q8N2B8 174 aa11.67□□□□□ -0.54
HMGA1-202ENST00000347617 TRAV12-3A0A0B4J271 114 aa11.67□□□□□ -0.54
HMGA1-202ENST00000347617 PF4V1P10720 104 aa11.67□□□□□ -0.54
HMGA1-202ENST00000347617 DEFB1P60022 68 aa11.67□□□□□ -0.54
HMGA1-202ENST00000347617 TMEM61Q8N0U2 210 aa11.67□□□□□ -0.54
HMGA1-202ENST00000347617 COPS9Q8WXC6 57 aa11.67□□□□□ -0.54
HMGA1-202ENST00000347617 NDUFA12Q9UI09 145 aa11.67□□□□□ -0.54
HMGA1-202ENST00000347617 TRGV11A0A075B6L2 103 aa11.66□□□□□ -0.54
HMGA1-202ENST00000347617 IGHV1OR15-1A0A075B7D0 117 aa11.66□□□□□ -0.54
HMGA1-202ENST00000347617 ATP5G1P05496 136 aa11.66□□□□□ -0.54
HMGA1-202ENST00000347617 PRSS2P07478 247 aa11.66□□□□□ -0.54
HMGA1-202ENST00000347617 CD28P10747 220 aa11.66□□□□□ -0.54
HMGA1-202ENST00000347617 MEIG1Q5JSS6 88 aa11.66□□□□□ -0.54
HMGA1-202ENST00000347617 RNF152Q8N8N0 203 aa11.66□□□□□ -0.54
HMGA1-202ENST00000347617 OPRPNQ99935 248 aaPredicted RBP11.66□□□□□ -0.54
HMGA1-202ENST00000347617 TRBV12-3P01733 135 aa11.65□□□□□ -0.54
HMGA1-202ENST00000347617 IGHV3-64A0A075B6Q5 118 aa11.64□□□□□ -0.55
HMGA1-202ENST00000347617 VSIG2Q96IQ7 327 aa11.64□□□□□ -0.55
HMGA1-202ENST00000347617 SPXQ9BT56 116 aa11.64□□□□□ -0.55
HMGA1-202ENST00000347617 CSMD2Q7Z408 3487 aa11.64□□□□□ -0.55
HMGA1-202ENST00000347617 DCANP1Q8TF63 244 aa11.64□□□□□ -0.55
HMGA1-202ENST00000347617 ZNF702PQ9H963 129 aa11.64□□□□□ -0.55
HMGA1-202ENST00000347617 SVEP1Q4LDE5 3571 aa11.63□□□□□ -0.55
HMGA1-202ENST00000347617 SMIM20Q8N5G0 67 aa11.63□□□□□ -0.55
HMGA1-202ENST00000347617 KRTAP1-1Q07627 177 aa11.62□□□□□ -0.55
HMGA1-202ENST00000347617 PIK3CD-AS1Q5SR53 167 aa11.62□□□□□ -0.55
HMGA1-202ENST00000347617 PDZD2O15018 2839 aa11.62□□□□□ -0.55
HMGA1-202ENST00000347617 SNRPD3P62318 126 aaKnown RBP11.62□□□□□ -0.55
HMGA1-202ENST00000347617 HERV-K104P63124 156 aa11.62□□□□□ -0.55
HMGA1-202ENST00000347617 CIRBPQ14011 172 aaKnown RBP11.62□□□□□ -0.55
HMGA1-202ENST00000347617 ADAMTSL4-AS1Q5T5F5 129 aa11.6□□□□□ -0.55
HMGA1-202ENST00000347617 LINC00643Q86TS7 51 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms