RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 TYMSP04818 313 aa6.16□□□□□ -1.42
HMGB1-203ENST00000341423 CTRLP40313 264 aa6.16□□□□□ -1.42
HMGB1-203ENST00000341423 RSPO1Q2MKA7 263 aaPredicted RBP6.16□□□□□ -1.42
HMGB1-203ENST00000341423 RTBDNQ9BSG5 229 aaPredicted RBP6.16□□□□□ -1.42
HMGB1-203ENST00000341423 ZNF580Q9UK33 172 aa6.16□□□□□ -1.42
HMGB1-203ENST00000341423 CRYGAP11844 174 aa6.16□□□□□ -1.42
HMGB1-203ENST00000341423 HERV-K104P63124 156 aa6.16□□□□□ -1.42
HMGB1-203ENST00000341423 C21orf62-AS1Q17RA5 79 aa6.16□□□□□ -1.42
HMGB1-203ENST00000341423 ATRAIDQ6UW56 229 aa6.15□□□□□ -1.42
HMGB1-203ENST00000341423 IFITM3Q01628 133 aa6.15□□□□□ -1.42
HMGB1-203ENST00000341423 RNASE13Q5GAN3 156 aaKnown RBP6.15□□□□□ -1.42
HMGB1-203ENST00000341423 PPDPFQ9H3Y8 114 aa6.15□□□□□ -1.42
HMGB1-203ENST00000341423 TRBV6-1A0A0K0K1D8 114 aa6.15□□□□□ -1.43
HMGB1-203ENST00000341423 D6R8Y8 96 aa6.15□□□□□ -1.43
HMGB1-203ENST00000341423 CRIP2P52943 208 aaPredicted RBP6.15□□□□□ -1.43
HMGB1-203ENST00000341423 LINC00315P59091 139 aa6.15□□□□□ -1.43
HMGB1-203ENST00000341423 UTF1Q5T230 341 aa6.15□□□□□ -1.43
HMGB1-203ENST00000341423 IGLV9-49A0A0B4J1Y8 123 aa6.15□□□□□ -1.43
HMGB1-203ENST00000341423 C2orf48Q96LS8 159 aa6.15□□□□□ -1.43
HMGB1-203ENST00000341423 LINC00467Q9BRT7 94 aa6.15□□□□□ -1.43
HMGB1-203ENST00000341423 TRBV6-8A0A0A6YYG3 113 aa6.14□□□□□ -1.43
HMGB1-203ENST00000341423 A0A1B0GV72 72 aa6.14□□□□□ -1.43
HMGB1-203ENST00000341423 PRSS46E5RG02 174 aa6.14□□□□□ -1.43
HMGB1-203ENST00000341423 RNASE7Q9H1E1 156 aaKnown RBP6.14□□□□□ -1.43
HMGB1-203ENST00000341423 GCN1Q92616 2671 aaKnown RBP6.14□□□□□ -1.43
HMGB1-203ENST00000341423 NCOA6Q14686 2063 aaPredicted RBP6.14□□□□□ -1.43
HMGB1-203ENST00000341423 M0QXV9 152 aa6.14□□□□□ -1.43
HMGB1-203ENST00000341423 CHKB-CPT1BH3BT56 60 aa6.14□□□□□ -1.43
HMGB1-203ENST00000341423 ZNF664Q8N3J9 261 aa6.14□□□□□ -1.43
HMGB1-203ENST00000341423 DAND5Q8N907 189 aa6.14□□□□□ -1.43
HMGB1-203ENST00000341423 COX7B2Q8TF08 81 aa6.14□□□□□ -1.43
HMGB1-203ENST00000341423 NBEAL1Q6ZS30 2694 aa6.14□□□□□ -1.43
HMGB1-203ENST00000341423 H7C423 109 aa6.13□□□□□ -1.43
HMGB1-203ENST00000341423 ATXN8Q156A1 80 aa6.13□□□□□ -1.43
HMGB1-203ENST00000341423 EML6Q6ZMW3 1958 aa6.13□□□□□ -1.43
HMGB1-203ENST00000341423 TRACP01848 142 aa6.13□□□□□ -1.43
HMGB1-203ENST00000341423 TRAV13-2A0A0B4J235 113 aa6.12□□□□□ -1.43
HMGB1-203ENST00000341423 TYMSOSQ8TAI1 123 aa6.12□□□□□ -1.43
HMGB1-203ENST00000341423 AGMATQ9BSE5 352 aa6.12□□□□□ -1.43
HMGB1-203ENST00000341423 PRAC2D3DTV9 90 aa6.12□□□□□ -1.43
HMGB1-203ENST00000341423 ZNF345Q14585 488 aa6.12□□□□□ -1.43
HMGB1-203ENST00000341423 E7EUB6 86 aa6.12□□□□□ -1.43
HMGB1-203ENST00000341423 C20orf78Q9BR46 151 aa6.12□□□□□ -1.43
HMGB1-203ENST00000341423 NDUFS6O75380 124 aaKnown RBP6.12□□□□□ -1.43
HMGB1-203ENST00000341423 DEFB1P60022 68 aa6.12□□□□□ -1.43
HMGB1-203ENST00000341423 IFI27L1Q96BM0 104 aa6.12□□□□□ -1.43
HMGB1-203ENST00000341423 COL6A5A8TX70 2615 aa6.12□□□□□ -1.43
HMGB1-203ENST00000341423 PRYO14603 147 aa6.12□□□□□ -1.43
HMGB1-203ENST00000341423 PLP1P60201 277 aa6.12□□□□□ -1.43
HMGB1-203ENST00000341423 RBX1P62877 108 aa6.12□□□□□ -1.43
HMGB1-203ENST00000341423 COX6A2Q02221 97 aa6.11□□□□□ -1.43
HMGB1-203ENST00000341423 RNF222A6NCQ9 220 aa6.11□□□□□ -1.43
HMGB1-203ENST00000341423 MDFICQ9P1T7 246 aa6.11□□□□□ -1.43
HMGB1-203ENST00000341423 SEC61GP60059 68 aa6.11□□□□□ -1.43
HMGB1-203ENST00000341423 MBD3L1Q8WWY6 194 aa6.11□□□□□ -1.43
HMGB1-203ENST00000341423 IGKCP01834 107 aa6.1□□□□□ -1.43
HMGB1-203ENST00000341423 C12orf74Q32Q52 190 aa6.1□□□□□ -1.43
HMGB1-203ENST00000341423 AMN1Q8IY45 258 aa6.1□□□□□ -1.43
HMGB1-203ENST00000341423 TRAV9-1A0A075B6T8 112 aa6.1□□□□□ -1.43
HMGB1-203ENST00000341423 SPINK8P0C7L1 97 aa6.1□□□□□ -1.43
HMGB1-203ENST00000341423 HELZP42694 1942 aaKnown RBP6.1□□□□□ -1.43
HMGB1-203ENST00000341423 ZFAND2AQ8N6M9 145 aa6.1□□□□□ -1.43
HMGB1-203ENST00000341423 SERF1AO75920 110 aa6.09□□□□□ -1.43
HMGB1-203ENST00000341423 PMCHL1Q16048 86 aa6.09□□□□□ -1.43
HMGB1-203ENST00000341423 HRCT1Q6UXD1 115 aa6.09□□□□□ -1.43
HMGB1-203ENST00000341423 A0A087X0K7 114 aa6.09□□□□□ -1.43
HMGB1-203ENST00000341423 ERG28Q9UKR5 140 aa6.09□□□□□ -1.43
HMGB1-203ENST00000341423 Q8N6K4 173 aa6.09□□□□□ -1.43
HMGB1-203ENST00000341423 SNRPEP62304 92 aaKnown RBP6.09□□□□□ -1.44
HMGB1-203ENST00000341423 LINC00574Q9H8X3 128 aa6.08□□□□□ -1.44
HMGB1-203ENST00000341423 H3BQ85 93 aa6.08□□□□□ -1.44
HMGB1-203ENST00000341423 OPRPNQ99935 248 aaPredicted RBP6.08□□□□□ -1.44
HMGB1-203ENST00000341423 TM2D3Q9BRN9 247 aa6.08□□□□□ -1.44
HMGB1-203ENST00000341423 ARHGAP21Q5T5U3 1957 aa6.08□□□□□ -1.44
HMGB1-203ENST00000341423 LINC00528Q8N1L1 170 aa6.08□□□□□ -1.44
HMGB1-203ENST00000341423 GNB1LQ9BYB4 327 aa6.08□□□□□ -1.44
HMGB1-203ENST00000341423 IL15RAQ13261 267 aa6.08□□□□□ -1.44
HMGB1-203ENST00000341423 ARHGAP32A7KAX9 2087 aa6.07□□□□□ -1.44
HMGB1-203ENST00000341423 NCR3O14931 201 aa6.07□□□□□ -1.44
HMGB1-203ENST00000341423 PLA2G2DQ9UNK4 145 aa6.07□□□□□ -1.44
HMGB1-203ENST00000341423 COX7BP24311 80 aa6.07□□□□□ -1.44
HMGB1-203ENST00000341423 KRTAP27-1Q3LI81 207 aa6.07□□□□□ -1.44
HMGB1-203ENST00000341423 SMKR1H3BMG3 65 aa6.07□□□□□ -1.44
HMGB1-203ENST00000341423 PIK3CD-AS1Q5SR53 167 aa6.07□□□□□ -1.44
HMGB1-203ENST00000341423 CD164L2Q6UWJ8 174 aa6.07□□□□□ -1.44
HMGB1-203ENST00000341423 Q6ZRM9 215 aa6.07□□□□□ -1.44
HMGB1-203ENST00000341423 LYPD5Q6UWN5 251 aa6.06□□□□□ -1.44
HMGB1-203ENST00000341423 UTRNP46939 3433 aa6.06□□□□□ -1.44
HMGB1-203ENST00000341423 PMCHL2Q9BQD1 86 aa6.06□□□□□ -1.44
HMGB1-203ENST00000341423 XAGE1AQ9HD64 81 aa6.06□□□□□ -1.44
HMGB1-203ENST00000341423 MRPL35Q9NZE8 188 aaKnown RBP6.06□□□□□ -1.44
HMGB1-203ENST00000341423 ASPHD1Q5U4P2 390 aa6.06□□□□□ -1.44
HMGB1-203ENST00000341423 IMUPQ9GZP8 106 aa6.05□□□□□ -1.44
HMGB1-203ENST00000341423 GFRA4Q9GZZ7 299 aa6.05□□□□□ -1.44
HMGB1-203ENST00000341423 DENND4CQ5VZ89 1909 aa6.05□□□□□ -1.44
HMGB1-203ENST00000341423 LINC01620Q4KN68 170 aa6.05□□□□□ -1.44
HMGB1-203ENST00000341423 BVES-AS1Q5T3Y7 98 aa6.05□□□□□ -1.44
HMGB1-203ENST00000341423 LHFPL1Q86WI0 220 aa6.05□□□□□ -1.44
HMGB1-203ENST00000341423 Q8N8P6 123 aa6.05□□□□□ -1.44
HMGB1-203ENST00000341423 IGKV4-1P06312 121 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms