RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 ALKBH7Q9BT30 221 aaPredicted RBP10.76□□□□□ -0.69
CLN3-201ENST00000333496 M0R143 59 aa10.75□□□□□ -0.69
CLN3-201ENST00000333496 HSBP1O75506 76 aa10.75□□□□□ -0.69
CLN3-201ENST00000333496 LINC00315P59091 139 aa10.75□□□□□ -0.69
CLN3-201ENST00000333496 PGLYRP4Q96LB8 373 aa10.75□□□□□ -0.69
CLN3-201ENST00000333496 DYNC1H1Q14204 4646 aaKnown RBP10.75□□□□□ -0.69
CLN3-201ENST00000333496 GAGE12JA6NER3 117 aa10.74□□□□□ -0.69
CLN3-201ENST00000333496 DNAH10OSP0CZ25 163 aa10.74□□□□□ -0.69
CLN3-201ENST00000333496 CAMPP49913 170 aa10.74□□□□□ -0.69
CLN3-201ENST00000333496 GAGE1Q13065 139 aa10.74□□□□□ -0.69
CLN3-201ENST00000333496 GAGE4Q13068 117 aa10.74□□□□□ -0.69
CLN3-201ENST00000333496 GAGE5Q13069 117 aa10.74□□□□□ -0.69
CLN3-201ENST00000333496 GAGE13Q4V321 117 aa10.74□□□□□ -0.69
CLN3-201ENST00000333496 NIT1Q86X76 327 aa10.74□□□□□ -0.69
CLN3-201ENST00000333496 ATP6V0E2Q8NHE4 81 aa10.74□□□□□ -0.69
CLN3-201ENST00000333496 MIEN1Q9BRT3 115 aa10.74□□□□□ -0.69
CLN3-201ENST00000333496 TNFRSF18Q9Y5U5 241 aa10.74□□□□□ -0.69
CLN3-201ENST00000333496 A0A1B0GV90 55 aa10.73□□□□□ -0.69
CLN3-201ENST00000333496 A0A1B0GW15 77 aa10.73□□□□□ -0.69
CLN3-201ENST00000333496 IGLC6P0CF74 106 aa10.73□□□□□ -0.69
CLN3-201ENST00000333496 BTF3P20290 206 aaKnown RBP10.73□□□□□ -0.69
CLN3-201ENST00000333496 Q6ZRN7 208 aaPredicted RBP10.73□□□□□ -0.69
CLN3-201ENST00000333496 Q8N976 141 aa10.73□□□□□ -0.69
CLN3-201ENST00000333496 GTSF1LQ9H1H1 148 aa10.73□□□□□ -0.69
CLN3-201ENST00000333496 PMCHL1Q16048 86 aa10.73□□□□□ -0.69
CLN3-201ENST00000333496 CHCHD1Q96BP2 118 aaKnown RBP10.73□□□□□ -0.69
CLN3-201ENST00000333496 PAM16Q9Y3D7 125 aa10.73□□□□□ -0.69
CLN3-201ENST00000333496 EREGO14944 169 aa10.72□□□□□ -0.69
CLN3-201ENST00000333496 C3orf79P0CE67 100 aa10.72□□□□□ -0.69
CLN3-201ENST00000333496 LELP1Q5T871 98 aa10.72□□□□□ -0.69
CLN3-201ENST00000333496 SPANXN1Q5VSR9 72 aa10.72□□□□□ -0.69
CLN3-201ENST00000333496 GATD1Q8NB37 220 aa10.72□□□□□ -0.69
CLN3-201ENST00000333496 IGHV3-38A0A0C4DH36 116 aa10.71□□□□□ -0.69
CLN3-201ENST00000333496 NTF3P20783 257 aa10.71□□□□□ -0.69
CLN3-201ENST00000333496 FER1L6-AS1Q8NA97 138 aa10.71□□□□□ -0.69
CLN3-201ENST00000333496 TPPP3Q9BW30 176 aa10.71□□□□□ -0.69
CLN3-201ENST00000333496 SNHG12Q9BXW3 62 aa10.71□□□□□ -0.69
CLN3-201ENST00000333496 KIF25-AS1Q9Y6Z4 181 aa10.71□□□□□ -0.69
CLN3-201ENST00000333496 A0A1B0GUT8 65 aa10.7□□□□□ -0.7
CLN3-201ENST00000333496 EVI2AP22794 236 aa10.7□□□□□ -0.7
CLN3-201ENST00000333496 CTRLP40313 264 aa10.7□□□□□ -0.7
CLN3-201ENST00000333496 RIGQ13278 110 aa10.7□□□□□ -0.7
CLN3-201ENST00000333496 RNASEKQ6P5S7 137 aaKnown RBP10.7□□□□□ -0.7
CLN3-201ENST00000333496 LYZL1Q6UWQ5 148 aa10.7□□□□□ -0.7
CLN3-201ENST00000333496 MSRB1Q9NZV6 116 aa10.7□□□□□ -0.7
CLN3-201ENST00000333496 TRAV9-2A0A087WT02 112 aa10.69□□□□□ -0.7
CLN3-201ENST00000333496 K7EP13 123 aa10.69□□□□□ -0.7
CLN3-201ENST00000333496 LINC01556Q5JQF7 62 aa10.69□□□□□ -0.7
CLN3-201ENST00000333496 FAM19A2Q8N3H0 131 aa10.69□□□□□ -0.7
CLN3-201ENST00000333496 TRAV8-6A0A0B4J262 113 aa10.69□□□□□ -0.7
CLN3-201ENST00000333496 C20orf202A1L168 122 aa10.69□□□□□ -0.7
CLN3-201ENST00000333496 SPATA45Q537H7 98 aa10.69□□□□□ -0.7
CLN3-201ENST00000333496 TRBV10-1A0A0K0K1A3 114 aa10.68□□□□□ -0.7
CLN3-201ENST00000333496 ZNF56Q15929 161 aa10.68□□□□□ -0.7
CLN3-201ENST00000333496 UQCR10Q9UDW1 63 aa10.68□□□□□ -0.7
CLN3-201ENST00000333496 NEXN-AS1Q8NBZ9 246 aa10.67□□□□□ -0.7
CLN3-201ENST00000333496 TRBV7-3A0A075B6L6 115 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 UBE2D3P61077 147 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 UBE2D2P62837 147 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 Q8N3U1 123 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 AP1S3Q96PC3 154 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 CNFNQ9BYD5 112 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 IGHV3-30P01768 117 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 IGHV3-33P01772 117 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 IGHV3-30-3P0DP02 117 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 IGHV3-30-5P0DP03 117 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 CACNG7P62955 275 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 RPL36AP83881 106 aaKnown RBP10.66□□□□□ -0.7
CLN3-201ENST00000333496 C10orf126Q8N4M7 172 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 RPL36ALQ969Q0 106 aaKnown RBP10.66□□□□□ -0.7
CLN3-201ENST00000333496 URB1-AS1Q96HZ7 61 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 TMEM70Q9BUB7 260 aa10.66□□□□□ -0.7
CLN3-201ENST00000333496 DNAH5Q8TE73 4624 aa10.65□□□□□ -0.7
CLN3-201ENST00000333496 F5H697 171 aa10.65□□□□□ -0.7
CLN3-201ENST00000333496 NFE4Q86UQ8 179 aa10.65□□□□□ -0.7
CLN3-201ENST00000333496 LRP1BQ9NZR2 4599 aa10.64□□□□□ -0.71
CLN3-201ENST00000333496 IBA57-AS1B1ANH7 110 aa10.64□□□□□ -0.71
CLN3-201ENST00000333496 SMIM17P0DL12 118 aa10.64□□□□□ -0.71
CLN3-201ENST00000333496 IGLC3P0DOY3 106 aa10.64□□□□□ -0.71
CLN3-201ENST00000333496 IGHV1-24A0A0C4DH33 117 aa10.63□□□□□ -0.71
CLN3-201ENST00000333496 LINC00614P0C842 121 aa10.63□□□□□ -0.71
CLN3-201ENST00000333496 TWIST1Q15672 202 aa10.63□□□□□ -0.71
CLN3-201ENST00000333496 KIAA1109Q2LD37 5005 aa10.63□□□□□ -0.71
CLN3-201ENST00000333496 LEPROTL1O95214 131 aa10.62□□□□□ -0.71
CLN3-201ENST00000333496 KRTAP10-2P60368 255 aa10.62□□□□□ -0.71
CLN3-201ENST00000333496 SPATA12Q7Z6I5 190 aa10.62□□□□□ -0.71
CLN3-201ENST00000333496 TCAPO15273 167 aa10.62□□□□□ -0.71
CLN3-201ENST00000333496 MGPP08493 103 aa10.62□□□□□ -0.71
CLN3-201ENST00000333496 HNRNPA3P51991 378 aaKnown RBP10.62□□□□□ -0.71
CLN3-201ENST00000333496 HSPB8Q9UJY1 196 aa10.62□□□□□ -0.71
CLN3-201ENST00000333496 M0QY20 66 aa10.61□□□□□ -0.71
CLN3-201ENST00000333496 SUMO4Q6EEV6 95 aa10.61□□□□□ -0.71
CLN3-201ENST00000333496 DAZ4Q86SG3 579 aaKnown RBP10.61□□□□□ -0.71
CLN3-201ENST00000333496 DAZ3Q9NR90 486 aaKnown RBP10.61□□□□□ -0.71
CLN3-201ENST00000333496 C16orf90A8MZG2 172 aa10.6□□□□□ -0.71
CLN3-201ENST00000333496 Q6ZN92 141 aa10.6□□□□□ -0.71
CLN3-201ENST00000333496 TMEM191AQ9H0A3 160 aa10.6□□□□□ -0.71
CLN3-201ENST00000333496 DPH3P1Q9H4G8 78 aa10.6□□□□□ -0.71
CLN3-201ENST00000333496 HERC2O95714 4834 aa10.59□□□□□ -0.71
CLN3-201ENST00000333496 SYS1-DBNDD2H3BUS1 97 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 250.1 ms