RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 PFN2P35080 140 aa6.35□□□□□ -1.39
PDLIM5-201ENST00000317968 ANKRD39Q53RE8 183 aa6.35□□□□□ -1.39
PDLIM5-201ENST00000317968 LINC00322Q6ZN03 302 aaPredicted RBP6.35□□□□□ -1.39
PDLIM5-201ENST00000317968 KLK12Q9UKR0 248 aa6.35□□□□□ -1.39
PDLIM5-201ENST00000317968 COL5A1-AS1Q5SY13 56 aa6.34□□□□□ -1.39
PDLIM5-201ENST00000317968 FAM19A2Q8N3H0 131 aa6.34□□□□□ -1.39
PDLIM5-201ENST00000317968 PRO1933Q9H354 126 aa6.34□□□□□ -1.39
PDLIM5-201ENST00000317968 SMKR1H3BMG3 65 aa6.34□□□□□ -1.39
PDLIM5-201ENST00000317968 H3BQ85 93 aa6.34□□□□□ -1.39
PDLIM5-201ENST00000317968 CRIP1P50238 77 aa6.34□□□□□ -1.39
PDLIM5-201ENST00000317968 WNK1Q9H4A3 2382 aa6.34□□□□□ -1.39
PDLIM5-201ENST00000317968 ABCA2Q9BZC7 2435 aa6.34□□□□□ -1.4
PDLIM5-201ENST00000317968 TRAV13-2A0A0B4J235 113 aa6.33□□□□□ -1.4
PDLIM5-201ENST00000317968 SUMO4Q6EEV6 95 aa6.33□□□□□ -1.4
PDLIM5-201ENST00000317968 A0A0J9YWU9 116 aa6.33□□□□□ -1.4
PDLIM5-201ENST00000317968 SYS1-DBNDD2H3BUS1 97 aa6.33□□□□□ -1.4
PDLIM5-201ENST00000317968 STPG4Q8N801 248 aa6.33□□□□□ -1.4
PDLIM5-201ENST00000317968 NPYP01303 97 aa6.33□□□□□ -1.4
PDLIM5-201ENST00000317968 FRMD6-AS1P0C7T7 363 aa6.33□□□□□ -1.4
PDLIM5-201ENST00000317968 LINC00474Q9P2X8 69 aa6.33□□□□□ -1.4
PDLIM5-201ENST00000317968 LGALS9CQ6DKI2 356 aa6.33□□□□□ -1.4
PDLIM5-201ENST00000317968 MRPL52Q86TS9 123 aaKnown RBP6.33□□□□□ -1.4
PDLIM5-201ENST00000317968 Q8N976 141 aa6.33□□□□□ -1.4
PDLIM5-201ENST00000317968 C3orf79P0CE67 100 aa6.32□□□□□ -1.4
PDLIM5-201ENST00000317968 KRTAP1-1Q07627 177 aa6.32□□□□□ -1.4
PDLIM5-201ENST00000317968 NDUFA12Q9UI09 145 aa6.32□□□□□ -1.4
PDLIM5-201ENST00000317968 ACANP16112 2415 aa6.32□□□□□ -1.4
PDLIM5-201ENST00000317968 DSPP15924 2871 aaKnown RBP6.32□□□□□ -1.4
PDLIM5-201ENST00000317968 DEFB104AQ8WTQ1 72 aa6.32□□□□□ -1.4
PDLIM5-201ENST00000317968 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.31□□□□□ -1.4
PDLIM5-201ENST00000317968 IGKV2-29A2NJV5 120 aaPredicted RBP6.31□□□□□ -1.4
PDLIM5-201ENST00000317968 RNF151Q2KHN1 245 aa6.31□□□□□ -1.4
PDLIM5-201ENST00000317968 C9orf85Q96MD7 179 aa6.31□□□□□ -1.4
PDLIM5-201ENST00000317968 SCRT2Q9NQ03 307 aa6.31□□□□□ -1.4
PDLIM5-201ENST00000317968 A0A0C4DFX4 3053 aa6.31□□□□□ -1.4
PDLIM5-201ENST00000317968 TRBV6-4A0A1B0GX49 114 aa6.31□□□□□ -1.4
PDLIM5-201ENST00000317968 UBE2D1P51668 147 aa6.31□□□□□ -1.4
PDLIM5-201ENST00000317968 TRBV6-5A0A0K0K1A5 114 aa6.31□□□□□ -1.4
PDLIM5-201ENST00000317968 DDTP30046 118 aa6.31□□□□□ -1.4
PDLIM5-201ENST00000317968 SPAG11BQ08648 103 aa6.31□□□□□ -1.4
PDLIM5-201ENST00000317968 ODF3L2Q3SX64 289 aa6.31□□□□□ -1.4
PDLIM5-201ENST00000317968 ATOH7Q8N100 152 aa6.31□□□□□ -1.4
PDLIM5-201ENST00000317968 TRAV8-4A0A0B4J246 113 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 PRB2P02812 416 aaPredicted RBP6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 GAGE2EQ4V326 116 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 KPRPQ5T749 579 aaPredicted RBP6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 GAGE2DQ9UEU5 116 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 JMJD1CQ15652 2540 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 TRAV26-2A0A0B4J265 109 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 ZNF664Q8N3J9 261 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 COL6A3P12111 3177 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 IGLV10-54A0A075B6I4 117 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 XIRP2A4UGR9 3374 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 HECTD1Q9ULT8 2610 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 CRYBA4P53673 196 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 NPC2P61916 151 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 MIAQ16674 131 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 C1orf134Q5TEV5 83 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 C18orf65Q6ZTR6 163 aa6.3□□□□□ -1.4
PDLIM5-201ENST00000317968 IGHV1-58A0A0C4DH39 117 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 GAGE12HA6NDE8 117 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 FGF6P10767 208 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 FAM19A4Q96LR4 140 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 NPSP0C0P6 89 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 HSD52Q0P140 79 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 PYY3Q5JQD4 70 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 SPATA12Q7Z6I5 190 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 BOD1L2Q8IYS8 172 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 INAFM2P0DMQ5 153 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 RBMY1FQ15415 496 aaKnown RBP6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 BEAN1Q3B7T3 259 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 C5orf38Q86SI9 138 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 A8MTW9 85 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 M0R2N4 97 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 ODF1Q14990 250 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 KRTAP24-1Q3LI83 254 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 COX7B2Q8TF08 81 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 TIMM17AQ99595 171 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 MSRB1Q9NZV6 116 aa6.29□□□□□ -1.4
PDLIM5-201ENST00000317968 A0A1B0GWB2 263 aa6.28□□□□□ -1.4
PDLIM5-201ENST00000317968 LELP1Q5T871 98 aa6.28□□□□□ -1.4
PDLIM5-201ENST00000317968 Q6ZTI0 123 aa6.28□□□□□ -1.4
PDLIM5-201ENST00000317968 TP53TG3Q9ULZ0 132 aa6.28□□□□□ -1.4
PDLIM5-201ENST00000317968 NANOS2P60321 138 aaKnown RBP6.28□□□□□ -1.4
PDLIM5-201ENST00000317968 REG3AQ06141 175 aa6.28□□□□□ -1.4
PDLIM5-201ENST00000317968 WWC2-AS2Q96NR7 200 aa6.28□□□□□ -1.4
PDLIM5-201ENST00000317968 FLNBO75369 2602 aaKnown RBP6.28□□□□□ -1.4
PDLIM5-201ENST00000317968 IGLV2-18A0A075B6J9 118 aa6.28□□□□□ -1.4
PDLIM5-201ENST00000317968 ZNF706Q9Y5V0 76 aaPredicted RBP6.28□□□□□ -1.4
PDLIM5-201ENST00000317968 TRAV12-1A0A0B4J245 112 aa6.27□□□□□ -1.41
PDLIM5-201ENST00000317968 RS1O15537 224 aa6.27□□□□□ -1.41
PDLIM5-201ENST00000317968 SPINK8P0C7L1 97 aa6.27□□□□□ -1.41
PDLIM5-201ENST00000317968 RNASE3P12724 160 aaKnown RBP6.27□□□□□ -1.41
PDLIM5-201ENST00000317968 F8P00451 2351 aa6.27□□□□□ -1.41
PDLIM5-201ENST00000317968 FN1P02751 2386 aaKnown RBP6.27□□□□□ -1.41
PDLIM5-201ENST00000317968 F8VRH5 84 aa6.27□□□□□ -1.41
PDLIM5-201ENST00000317968 MDFICQ9P1T7 246 aa6.27□□□□□ -1.41
PDLIM5-201ENST00000317968 SPTBN5Q9NRC6 3674 aaKnown RBP6.27□□□□□ -1.41
PDLIM5-201ENST00000317968 WFDC9Q8NEX5 89 aa6.27□□□□□ -1.41
PDLIM5-201ENST00000317968 CARD19Q96LW7 228 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms