RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 PRSS2P07478 247 aa13.91□□□□□ -0.18
RTN4-201ENST00000317610 DUX5Q96PT3 197 aa13.91□□□□□ -0.18
RTN4-201ENST00000317610 TIMM17BO60830 172 aa13.9□□□□□ -0.18
RTN4-201ENST00000317610 RNASE13Q5GAN3 156 aaKnown RBP13.9□□□□□ -0.18
RTN4-201ENST00000317610 UBE2E2Q96LR5 201 aa13.9□□□□□ -0.18
RTN4-201ENST00000317610 BEX4Q9NWD9 120 aaPredicted RBP13.9□□□□□ -0.18
RTN4-201ENST00000317610 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.89□□□□□ -0.193e-9■■■■■ 96.9
RTN4-201ENST00000317610 RBMY1BA6NDE4 496 aaKnown RBP13.89□□□□□ -0.19
RTN4-201ENST00000317610 RBMY1EA6NEQ0 496 aaKnown RBP13.89□□□□□ -0.19
RTN4-201ENST00000317610 RBMY1DP0C7P1 496 aaKnown RBP13.89□□□□□ -0.19
RTN4-201ENST00000317610 Q6ZSN1 163 aa13.89□□□□□ -0.19
RTN4-201ENST00000317610 Q9UF83 564 aa13.89□□□□□ -0.19
RTN4-201ENST00000317610 H3BMM0 161 aa13.89□□□□□ -0.19
RTN4-201ENST00000317610 YAE1D1Q9NRH1 226 aa13.89□□□□□ -0.19
RTN4-201ENST00000317610 TEX49A0A1B0GTD5 131 aa13.88□□□□□ -0.19
RTN4-201ENST00000317610 ZNF415Q09FC8 603 aa13.88□□□□□ -0.19
RTN4-201ENST00000317610 ANAPC13Q9BS18 74 aa13.88□□□□□ -0.19
RTN4-201ENST00000317610 H3BT86 120 aa13.87□□□□□ -0.19
RTN4-201ENST00000317610 HTN1P15515 57 aa13.87□□□□□ -0.19
RTN4-201ENST00000317610 DEFB131AP59861 70 aa13.87□□□□□ -0.19
RTN4-201ENST00000317610 TMEM61Q8N0U2 210 aa13.87□□□□□ -0.19
RTN4-201ENST00000317610 UBE2WQ96B02 151 aa13.87□□□□□ -0.19
RTN4-201ENST00000317610 DUX3Q96PT4 197 aa13.87□□□□□ -0.19
RTN4-201ENST00000317610 SORL1Q92673 2214 aa13.87□□□□□ -0.19
RTN4-201ENST00000317610 H7C423 109 aa13.87□□□□□ -0.19
RTN4-201ENST00000317610 DNAJC30Q96LL9 226 aa13.87□□□□□ -0.19
RTN4-201ENST00000317610 A8MZ25 164 aa13.86□□□□□ -0.19
RTN4-201ENST00000317610 COX6CP09669 75 aa13.86□□□□□ -0.19
RTN4-201ENST00000317610 IFITM1P13164 125 aa13.86□□□□□ -0.19
RTN4-201ENST00000317610 DSCR9P59020 149 aa13.86□□□□□ -0.19
RTN4-201ENST00000317610 LINC00467Q9BRT7 94 aa13.86□□□□□ -0.19
RTN4-201ENST00000317610 IGLV5-45A0A087WSX0 123 aa13.86□□□□□ -0.19
RTN4-201ENST00000317610 TRAV8-4A0A0B4J246 113 aa13.86□□□□□ -0.19
RTN4-201ENST00000317610 SNCGO76070 127 aa13.86□□□□□ -0.19
RTN4-201ENST00000317610 C2orf82Q6UX34 121 aa13.86□□□□□ -0.19
RTN4-201ENST00000317610 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.85□□□□□ -0.19
RTN4-201ENST00000317610 IGKV2-29A2NJV5 120 aaPredicted RBP13.85□□□□□ -0.19
RTN4-201ENST00000317610 Q6Q795 121 aa13.85□□□□□ -0.19
RTN4-201ENST00000317610 LINC01356Q8N9X3 169 aa13.85□□□□□ -0.19
RTN4-201ENST00000317610 ZNF702PQ9H963 129 aa13.85□□□□□ -0.19
RTN4-201ENST00000317610 IGHV3-53P01767 116 aa13.85□□□□□ -0.19
RTN4-201ENST00000317610 TIRAPP58753 221 aa13.85□□□□□ -0.19
RTN4-201ENST00000317610 VPREB3Q9UKI3 123 aa13.85□□□□□ -0.19
RTN4-201ENST00000317610 PRM2P04554 102 aa13.84□□□□□ -0.19
RTN4-201ENST00000317610 GAGE2BQ13066 116 aa13.84□□□□□ -0.19
RTN4-201ENST00000317610 GAGE2EQ4V326 116 aa13.84□□□□□ -0.19
RTN4-201ENST00000317610 GAGE2DQ9UEU5 116 aa13.84□□□□□ -0.19
RTN4-201ENST00000317610 CSPG4Q6UVK1 2322 aa13.84□□□□□ -0.19
RTN4-201ENST00000317610 TRAV4A0A0B4J268 109 aa13.84□□□□□ -0.19
RTN4-201ENST00000317610 LST1O00453 97 aa13.84□□□□□ -0.19
RTN4-201ENST00000317610 NDUFA1O15239 70 aa13.84□□□□□ -0.19
RTN4-201ENST00000317610 CRLF1O75462 422 aa13.84□□□□□ -0.19
RTN4-201ENST00000317610 C11orf72Q8NBR9 251 aa13.84□□□□□ -0.19
RTN4-201ENST00000317610 J3QLI3 93 aa13.83□□□□□ -0.2
RTN4-201ENST00000317610 NHLRC4P0CG21 123 aaPredicted RBP13.83□□□□□ -0.2
RTN4-201ENST00000317610 BEAN1Q3B7T3 259 aa13.83□□□□□ -0.2
RTN4-201ENST00000317610 Q6ZSV7 163 aa13.83□□□□□ -0.2
RTN4-201ENST00000317610 DEFB121Q5J5C9 76 aa13.82□□□□□ -0.2
RTN4-201ENST00000317610 COL12A1Q99715 3063 aa13.82□□□□□ -0.2
RTN4-201ENST00000317610 NPC2P61916 151 aa13.81□□□□□ -0.2
RTN4-201ENST00000317610 CDKN2A-AS1Q9UH64 79 aa13.81□□□□□ -0.2
RTN4-201ENST00000317610 A0A096LNT2 108 aa13.81□□□□□ -0.2
RTN4-201ENST00000317610 SLURP1P55000 103 aa13.81□□□□□ -0.2
RTN4-201ENST00000317610 CLEC2BQ92478 149 aa13.81□□□□□ -0.2
RTN4-201ENST00000317610 RS1O15537 224 aa13.8□□□□□ -0.2
RTN4-201ENST00000317610 ITPR1Q14643 2758 aa13.8□□□□□ -0.2
RTN4-201ENST00000317610 NDUFV3P56181 108 aaKnown RBP13.8□□□□□ -0.2
RTN4-201ENST00000317610 TMEM101Q96IK0 257 aa13.8□□□□□ -0.2
RTN4-201ENST00000317610 IGHV3-38A0A0C4DH36 116 aa13.79□□□□□ -0.2
RTN4-201ENST00000317610 MRPL23Q16540 153 aaKnown RBP13.79□□□□□ -0.2
RTN4-201ENST00000317610 Q6YL49 198 aa13.79□□□□□ -0.2
RTN4-201ENST00000317610 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.79□□□□□ -0.2
RTN4-201ENST00000317610 C15orf53Q8NAA6 179 aa13.79□□□□□ -0.2
RTN4-201ENST00000317610 NCOR2Q9Y618 2525 aa13.78□□□□□ -0.2
RTN4-201ENST00000317610 IGLV5-39A0A0G2JS06 123 aa13.78□□□□□ -0.2
RTN4-201ENST00000317610 FAM240AA0A1B0GVK7 77 aa13.78□□□□□ -0.2
RTN4-201ENST00000317610 FSHBP01225 129 aa13.78□□□□□ -0.2
RTN4-201ENST00000317610 GAGE5Q13069 117 aa13.78□□□□□ -0.2
RTN4-201ENST00000317610 GAGE6Q13070 117 aa13.78□□□□□ -0.2
RTN4-201ENST00000317610 C18orf65Q6ZTR6 163 aa13.78□□□□□ -0.2
RTN4-201ENST00000317610 LINC01587Q99440 93 aa13.78□□□□□ -0.2
RTN4-201ENST00000317610 CITED2Q99967 270 aaPredicted RBP13.78□□□□□ -0.2
RTN4-201ENST00000317610 MAP6D1Q9H9H5 199 aa13.78□□□□□ -0.2
RTN4-201ENST00000317610 DEFB136Q30KP8 78 aa13.77□□□□□ -0.21
RTN4-201ENST00000317610 FAM19A3Q7Z5A8 133 aa13.76□□□□□ -0.21
RTN4-201ENST00000317610 SPG11Q96JI7 2443 aa13.76□□□□□ -0.21
RTN4-201ENST00000317610 IGHV3OR16-12A0A075B7B8 117 aa13.76□□□□□ -0.21
RTN4-201ENST00000317610 CIRBPQ14011 172 aaKnown RBP13.76□□□□□ -0.21
RTN4-201ENST00000317610 DAND5Q8N907 189 aa13.76□□□□□ -0.21
RTN4-201ENST00000317610 COX6A2Q02221 97 aa13.75□□□□□ -0.21
RTN4-201ENST00000317610 PEMTQ9UBM1 199 aa13.75□□□□□ -0.21
RTN4-201ENST00000317610 INSP01308 110 aa13.75□□□□□ -0.21
RTN4-201ENST00000317610 HERVK_113P63121 156 aa13.75□□□□□ -0.21
RTN4-201ENST00000317610 LINC00308Q8TCZ7 52 aa13.75□□□□□ -0.21
RTN4-201ENST00000317610 NRGNQ92686 78 aa13.75□□□□□ -0.21
RTN4-201ENST00000317610 CRYBG3Q68DQ2 2970 aa13.74□□□□□ -0.21
RTN4-201ENST00000317610 CHD8Q9HCK8 2581 aa13.74□□□□□ -0.21
RTN4-201ENST00000317610 CELSR2Q9HCU4 2923 aa13.74□□□□□ -0.21
RTN4-201ENST00000317610 SPTBN4Q9H254 2564 aa13.74□□□□□ -0.21
RTN4-201ENST00000317610 TTC32Q5I0X7 151 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 149.3 ms