RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 CLPSL2Q6UWE3 100 aa17.34■□□□□ 0.37
CDKN2A-201ENST00000304494 DNAH8Q96JB1 4490 aa17.33■□□□□ 0.37
CDKN2A-201ENST00000304494 HIGD1CA8MV81 97 aa17.33■□□□□ 0.36
CDKN2A-201ENST00000304494 HLA-DQA1P01909 254 aa17.33■□□□□ 0.36
CDKN2A-201ENST00000304494 HAMPP81172 84 aa17.33■□□□□ 0.36
CDKN2A-201ENST00000304494 TMEM241Q24JQ0 296 aa17.33■□□□□ 0.36
CDKN2A-201ENST00000304494 Q5VSD8 79 aa17.33■□□□□ 0.36
CDKN2A-201ENST00000304494 A0A1B0GUT8 65 aa17.32■□□□□ 0.36
CDKN2A-201ENST00000304494 REG3AQ06141 175 aa17.32■□□□□ 0.36
CDKN2A-201ENST00000304494 RPL39LQ96EH5 51 aaKnown RBP17.32■□□□□ 0.36
CDKN2A-201ENST00000304494 FAM30AQ9NZY2 134 aa17.32■□□□□ 0.36
CDKN2A-201ENST00000304494 PEA15Q15121 130 aa17.31■□□□□ 0.36
CDKN2A-201ENST00000304494 Q6ZSA8 131 aa17.31■□□□□ 0.36
CDKN2A-201ENST00000304494 C20orf203Q8NBC4 194 aa17.31■□□□□ 0.36
CDKN2A-201ENST00000304494 DEFB104AQ8WTQ1 72 aa17.31■□□□□ 0.36
CDKN2A-201ENST00000304494 FAT1Q14517 4588 aa17.31■□□□□ 0.36
CDKN2A-201ENST00000304494 NCR2O95944 276 aa17.3■□□□□ 0.36
CDKN2A-201ENST00000304494 SMR3BP02814 79 aaPredicted RBP17.3■□□□□ 0.36
CDKN2A-201ENST00000304494 USP17L23D6RBM5 183 aa17.29■□□□□ 0.36
CDKN2A-201ENST00000304494 FAM229AH3BQW9 127 aa17.29■□□□□ 0.36
CDKN2A-201ENST00000304494 ISOC2Q96AB3 205 aa17.29■□□□□ 0.36
CDKN2A-201ENST00000304494 SMDT1Q9H4I9 107 aa17.29■□□□□ 0.36
CDKN2A-201ENST00000304494 V9GYV3 84 aa17.29■□□□□ 0.36
CDKN2A-201ENST00000304494 IGLV4-60A0A075B6I1 120 aa17.28■□□□□ 0.36
CDKN2A-201ENST00000304494 TRAV8-4A0A0B4J246 113 aa17.28■□□□□ 0.36
CDKN2A-201ENST00000304494 TMEM191AQ9H0A3 160 aa17.28■□□□□ 0.36
CDKN2A-201ENST00000304494 NAT8Q9UHE5 227 aa17.28■□□□□ 0.36
CDKN2A-201ENST00000304494 RPL23P62829 140 aaKnown RBP17.27■□□□□ 0.36
CDKN2A-201ENST00000304494 LINC01620Q4KN68 170 aa17.27■□□□□ 0.36
CDKN2A-201ENST00000304494 KRTAP26-1Q6PEX3 210 aa17.27■□□□□ 0.36
CDKN2A-201ENST00000304494 TRBV6-5A0A0K0K1A5 114 aa17.26■□□□□ 0.35
CDKN2A-201ENST00000304494 SDHAF1A6NFY7 115 aa17.26■□□□□ 0.35
CDKN2A-201ENST00000304494 ADIRFQ15847 76 aa17.26■□□□□ 0.35
CDKN2A-201ENST00000304494 C9JQL5 133 aa17.25■□□□□ 0.35
CDKN2A-201ENST00000304494 APCSP02743 223 aa17.25■□□□□ 0.35
CDKN2A-201ENST00000304494 IGLV10-54A0A075B6I4 117 aa17.24■□□□□ 0.35
CDKN2A-201ENST00000304494 H7C423 109 aa17.24■□□□□ 0.35
CDKN2A-201ENST00000304494 SRSF3P84103 164 aaKnown RBP17.24■□□□□ 0.35
CDKN2A-201ENST00000304494 RIGQ13278 110 aa17.24■□□□□ 0.35
CDKN2A-201ENST00000304494 NAT8BQ9UHF3 227 aa17.24■□□□□ 0.35
CDKN2A-201ENST00000304494 VPS13BQ7Z7G8 4022 aa17.23■□□□□ 0.35
CDKN2A-201ENST00000304494 I3L3M4 83 aa17.23■□□□□ 0.35
CDKN2A-201ENST00000304494 PMCHP20382 165 aa17.23■□□□□ 0.35
CDKN2A-201ENST00000304494 AMMECR1LQ6DCA0 310 aa17.23■□□□□ 0.35
CDKN2A-201ENST00000304494 NUP35Q8NFH5 326 aa17.23■□□□□ 0.35
CDKN2A-201ENST00000304494 MRAP2Q96G30 205 aa17.23■□□□□ 0.35
CDKN2A-201ENST00000304494 ST20Q9HBF5 79 aa17.23■□□□□ 0.35
CDKN2A-201ENST00000304494 INAFM2P0DMQ5 153 aa17.22■□□□□ 0.35
CDKN2A-201ENST00000304494 RAB4AP20338 218 aa17.21■□□□□ 0.35
CDKN2A-201ENST00000304494 DGAT2L7PQ6IED9 249 aa17.21■□□□□ 0.35
CDKN2A-201ENST00000304494 CLRN3Q8NCR9 226 aa17.21■□□□□ 0.35
CDKN2A-201ENST00000304494 RNF185Q96GF1 192 aa17.21■□□□□ 0.35
CDKN2A-201ENST00000304494 PRSS1P07477 247 aa17.2■□□□□ 0.34
CDKN2A-201ENST00000304494 AMN1Q8IY45 258 aa17.2■□□□□ 0.34
CDKN2A-201ENST00000304494 IGKV2D-29A0A075B6S2 120 aaPredicted RBP17.18■□□□□ 0.34
CDKN2A-201ENST00000304494 IGKV2-29A2NJV5 120 aaPredicted RBP17.18■□□□□ 0.34
CDKN2A-201ENST00000304494 GAS8-AS1O95177 125 aa17.18■□□□□ 0.34
CDKN2A-201ENST00000304494 RNASEKQ6P5S7 137 aaKnown RBP17.18■□□□□ 0.34
CDKN2A-201ENST00000304494 SMIM27A0A1W2PRY6 76 aa17.17■□□□□ 0.34
CDKN2A-201ENST00000304494 PPP1R17O96001 155 aa17.16■□□□□ 0.34
CDKN2A-201ENST00000304494 FGF6P10767 208 aa17.16■□□□□ 0.34
CDKN2A-201ENST00000304494 ZNF25P17030 456 aaPredicted RBP17.16■□□□□ 0.34
CDKN2A-201ENST00000304494 SCXQ7RTU7 201 aa17.16■□□□□ 0.34
CDKN2A-201ENST00000304494 CHAC1Q9BUX1 264 aa17.16■□□□□ 0.34
CDKN2A-201ENST00000304494 RPS10P46783 165 aaKnown RBP17.15■□□□□ 0.34
CDKN2A-201ENST00000304494 TRBV27A0A0K0K1C4 114 aa17.14■□□□□ 0.33
CDKN2A-201ENST00000304494 A0A1B0GW15 77 aa17.14■□□□□ 0.33
CDKN2A-201ENST00000304494 TSHBP01222 138 aa17.14■□□□□ 0.33
CDKN2A-201ENST00000304494 POLR2KP53803 58 aaKnown RBP17.14■□□□□ 0.33
CDKN2A-201ENST00000304494 TMEM101Q96IK0 257 aa17.14■□□□□ 0.33
CDKN2A-201ENST00000304494 BTF3L4Q96K17 158 aa17.14■□□□□ 0.33
CDKN2A-201ENST00000304494 TMEM242Q9NWH2 141 aa17.14■□□□□ 0.33
CDKN2A-201ENST00000304494 IGKV3OR2-268A0A0C4DH90 116 aa17.13■□□□□ 0.33
CDKN2A-201ENST00000304494 PLA2G1BP04054 148 aaKnown RBP17.13■□□□□ 0.33
CDKN2A-201ENST00000304494 C9orf163Q8N9P6 203 aa17.13■□□□□ 0.33
CDKN2A-201ENST00000304494 hDV102S1A0JD36 115 aa17.12■□□□□ 0.33
CDKN2A-201ENST00000304494 ESDP10768 282 aa17.12■□□□□ 0.33
CDKN2A-201ENST00000304494 LINC00528Q8N1L1 170 aa17.12■□□□□ 0.33
CDKN2A-201ENST00000304494 GAGE12HA6NDE8 117 aa17.1■□□□□ 0.33
CDKN2A-201ENST00000304494 SMKR1H3BMG3 65 aa17.1■□□□□ 0.33
CDKN2A-201ENST00000304494 VCYO14598 125 aa17.1■□□□□ 0.33
CDKN2A-201ENST00000304494 RAB14P61106 215 aa17.1■□□□□ 0.33
CDKN2A-201ENST00000304494 CNBPP62633 177 aaKnown RBP17.1■□□□□ 0.33
CDKN2A-201ENST00000304494 FAM104BQ5XKR9 115 aa17.1■□□□□ 0.33
CDKN2A-201ENST00000304494 CIRBP-AS1Q8TBR5 109 aa17.1■□□□□ 0.33
CDKN2A-201ENST00000304494 AP5S1Q9NUS5 200 aa17.1■□□□□ 0.33
CDKN2A-201ENST00000304494 SRRM2Q9UQ35 2752 aaKnown RBP17.1■□□□□ 0.33
CDKN2A-201ENST00000304494 CAMPP49913 170 aa17.09■□□□□ 0.33
CDKN2A-201ENST00000304494 CFAP161Q6P656 301 aa17.09■□□□□ 0.33
CDKN2A-201ENST00000304494 OR5A1Q8NGJ0 315 aa17.09■□□□□ 0.33
CDKN2A-201ENST00000304494 PPP1R2P9O14990 202 aa17.08■□□□□ 0.32
CDKN2A-201ENST00000304494 S100A8P05109 93 aa17.08■□□□□ 0.32
CDKN2A-201ENST00000304494 SUMO2P61956 95 aaKnown RBP17.08■□□□□ 0.32
CDKN2A-201ENST00000304494 NRACQ8N912 160 aa17.08■□□□□ 0.32
CDKN2A-201ENST00000304494 CHCHD10Q8WYQ3 142 aaPredicted RBP17.08■□□□□ 0.32
CDKN2A-201ENST00000304494 C7orf77A4D0Y5 90 aa17.07■□□□□ 0.32
CDKN2A-201ENST00000304494 LINC00862A6NCI5 91 aa17.07■□□□□ 0.32
CDKN2A-201ENST00000304494 FCER1GP30273 86 aa17.07■□□□□ 0.32
CDKN2A-201ENST00000304494 MRPL51Q4U2R6 128 aaKnown RBP17.07■□□□□ 0.32
CDKN2A-201ENST00000304494 TRAV16A0A0A6YYK6 109 aaPredicted RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms