RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 CST9LQ9H4G1 147 aa8.31□□□□□ -1.08
CUX1-202ENST00000292538 PMVKQ15126 192 aa8.31□□□□□ -1.08
CUX1-202ENST00000292538 SCGB1D4Q6XE38 83 aa8.31□□□□□ -1.08
CUX1-202ENST00000292538 ZNRF2Q8NHG8 242 aa8.31□□□□□ -1.08
CUX1-202ENST00000292538 PRADC1Q9BSG0 188 aa8.31□□□□□ -1.08
CUX1-202ENST00000292538 TAX1BP3O14907 124 aa8.3□□□□□ -1.08
CUX1-202ENST00000292538 ORAOV1Q8WV07 137 aa8.3□□□□□ -1.08
CUX1-202ENST00000292538 TRAV12-1A0A0B4J245 112 aa8.3□□□□□ -1.08
CUX1-202ENST00000292538 TRBV6-5A0A0K0K1A5 114 aa8.3□□□□□ -1.08
CUX1-202ENST00000292538 K7ERJ3 54 aa8.3□□□□□ -1.08
CUX1-202ENST00000292538 LINC00482Q8N8I6 264 aa8.3□□□□□ -1.08
CUX1-202ENST00000292538 HIST1H4GQ99525 98 aa8.3□□□□□ -1.08
CUX1-202ENST00000292538 VCX2Q9H322 139 aa8.3□□□□□ -1.08
CUX1-202ENST00000292538 AMMECR1LQ6DCA0 310 aa8.3□□□□□ -1.08
CUX1-202ENST00000292538 A8MTW9 85 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 RRN3P1Q2M238 152 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 C20orf203Q8NBC4 194 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 GAGE12JA6NER3 117 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 ZNF815PA8K554 130 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 NDUFA7O95182 113 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 DEFB130BP0DP73 79 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 DEFB130AP0DP74 79 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 FXYD2P54710 66 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 HSD52Q0P140 79 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 GAGE1Q13065 139 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 GAGE4Q13068 117 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 GAGE5Q13069 117 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 GAGE13Q4V321 117 aa8.29□□□□□ -1.08
CUX1-202ENST00000292538 GIG44P09565 113 aaPredicted RBP8.28□□□□□ -1.08
CUX1-202ENST00000292538 NHP2Q9NX24 153 aaKnown RBP8.28□□□□□ -1.08
CUX1-202ENST00000292538 A0A0J9YXV3 536 aa8.28□□□□□ -1.08
CUX1-202ENST00000292538 H3BUT2 72 aa8.28□□□□□ -1.08
CUX1-202ENST00000292538 NDUFA11Q86Y39 141 aa8.28□□□□□ -1.08
CUX1-202ENST00000292538 IGLV4-69A0A075B6H9 119 aa8.27□□□□□ -1.09
CUX1-202ENST00000292538 RNASE8Q8TDE3 154 aaKnown RBP8.27□□□□□ -1.09
CUX1-202ENST00000292538 TMEM141Q96I45 108 aa8.27□□□□□ -1.09
CUX1-202ENST00000292538 A6NDN8 102 aa8.27□□□□□ -1.09
CUX1-202ENST00000292538 DEFB4AO15263 64 aa8.27□□□□□ -1.09
CUX1-202ENST00000292538 CCL25O15444 150 aa8.27□□□□□ -1.09
CUX1-202ENST00000292538 MYMXA0A1B0GTQ4 84 aa8.26□□□□□ -1.09
CUX1-202ENST00000292538 SRSF9Q13242 221 aaKnown RBP eCLIP8.26□□□□□ -1.09
CUX1-202ENST00000292538 DGAT2L7PQ6IED9 249 aa8.26□□□□□ -1.09
CUX1-202ENST00000292538 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.26□□□□□ -1.09
CUX1-202ENST00000292538 TIMM17AQ99595 171 aa8.26□□□□□ -1.09
CUX1-202ENST00000292538 RPL32P62910 135 aaKnown RBP8.26□□□□□ -1.09
CUX1-202ENST00000292538 RHOHQ15669 191 aa8.26□□□□□ -1.09
CUX1-202ENST00000292538 UFSP1Q6NVU6 142 aa8.26□□□□□ -1.09
CUX1-202ENST00000292538 TMEM263Q8WUH6 116 aaKnown RBP8.26□□□□□ -1.09
CUX1-202ENST00000292538 LINC00467Q9BRT7 94 aa8.26□□□□□ -1.09
CUX1-202ENST00000292538 C19orf73Q9NVV2 129 aa8.26□□□□□ -1.09
CUX1-202ENST00000292538 IGLV4-3A0A075B6K6 122 aa8.26□□□□□ -1.09
CUX1-202ENST00000292538 LOC100131303A0A0U1RQF7 123 aa8.26□□□□□ -1.09
CUX1-202ENST00000292538 RHODO00212 210 aa8.26□□□□□ -1.09
CUX1-202ENST00000292538 HERVK_113P61574 105 aa8.26□□□□□ -1.09
CUX1-202ENST00000292538 PLEKHB2Q96CS7 222 aa8.26□□□□□ -1.09
CUX1-202ENST00000292538 SEC11AP67812 179 aa8.25□□□□□ -1.09
CUX1-202ENST00000292538 SIVA1O15304 175 aa8.25□□□□□ -1.09
CUX1-202ENST00000292538 RS1O15537 224 aa8.25□□□□□ -1.09
CUX1-202ENST00000292538 CRLF1O75462 422 aa8.25□□□□□ -1.09
CUX1-202ENST00000292538 BEAN1Q3B7T3 259 aa8.25□□□□□ -1.09
CUX1-202ENST00000292538 SLC25A29Q8N8R3 303 aa8.25□□□□□ -1.09
CUX1-202ENST00000292538 TRGV4A0A0C4DH28 118 aa8.24□□□□□ -1.09
CUX1-202ENST00000292538 IGKV3OR2-268A0A0C4DH90 116 aa8.24□□□□□ -1.09
CUX1-202ENST00000292538 SFTA2Q6UW10 78 aa8.24□□□□□ -1.09
CUX1-202ENST00000292538 E9PLD3 99 aa8.24□□□□□ -1.09
CUX1-202ENST00000292538 STAB1Q9NY15 2570 aa8.24□□□□□ -1.09
CUX1-202ENST00000292538 MAST4O15021 2626 aa8.24□□□□□ -1.09
CUX1-202ENST00000292538 CMC4P56277 68 aaPredicted RBP8.23□□□□□ -1.09
CUX1-202ENST00000292538 UBE2V1Q13404 147 aa8.23□□□□□ -1.09
CUX1-202ENST00000292538 TSPEAR-AS2P59090 65 aa8.23□□□□□ -1.09
CUX1-202ENST00000292538 Q6ZUT4 128 aa8.23□□□□□ -1.09
CUX1-202ENST00000292538 CEND1Q8N111 149 aa8.23□□□□□ -1.09
CUX1-202ENST00000292538 C1QTNF4Q9BXJ3 329 aa8.23□□□□□ -1.09
CUX1-202ENST00000292538 TRBV7-3A0A075B6L6 115 aa8.23□□□□□ -1.09
CUX1-202ENST00000292538 A8MZ25 164 aa8.23□□□□□ -1.09
CUX1-202ENST00000292538 SMIM13P0DJ93 91 aa8.23□□□□□ -1.09
CUX1-202ENST00000292538 LGALS3P17931 250 aaKnown RBP8.23□□□□□ -1.09
CUX1-202ENST00000292538 RPL36AP83881 106 aaKnown RBP8.23□□□□□ -1.09
CUX1-202ENST00000292538 RPL36ALQ969Q0 106 aaKnown RBP8.23□□□□□ -1.09
CUX1-202ENST00000292538 CHCHD7Q9BUK0 85 aa8.23□□□□□ -1.09
CUX1-202ENST00000292538 TRAV8-3A0A0A6YYJ7 113 aa8.22□□□□□ -1.09
CUX1-202ENST00000292538 A0A096LPF7 62 aa8.22□□□□□ -1.09
CUX1-202ENST00000292538 K7EQD1 137 aa8.22□□□□□ -1.09
CUX1-202ENST00000292538 C16orf74Q96GX8 76 aa8.22□□□□□ -1.09
CUX1-202ENST00000292538 TRAV13-1A0A0B4J241 112 aa8.21□□□□□ -1.09
CUX1-202ENST00000292538 GAGE10A6NGK3 116 aa8.21□□□□□ -1.09
CUX1-202ENST00000292538 LINC00694P0DN24 101 aa8.21□□□□□ -1.09
CUX1-202ENST00000292538 DEFB135Q30KP9 77 aa8.21□□□□□ -1.09
CUX1-202ENST00000292538 PAPPA-AS1Q5QFB9 102 aa8.21□□□□□ -1.09
CUX1-202ENST00000292538 LINC01549A6NIU2 74 aa8.2□□□□□ -1.1
CUX1-202ENST00000292538 J3QQQ9 107 aa8.2□□□□□ -1.1
CUX1-202ENST00000292538 APOMO95445 188 aa8.2□□□□□ -1.1
CUX1-202ENST00000292538 SPINK8P0C7L1 97 aa8.2□□□□□ -1.1
CUX1-202ENST00000292538 ZNF22P17026 224 aaPredicted RBP8.2□□□□□ -1.1
CUX1-202ENST00000292538 CSNK1G2-AS1Q8NCQ2 148 aa8.2□□□□□ -1.1
CUX1-202ENST00000292538 GEMIN7Q9H840 131 aaKnown RBP8.2□□□□□ -1.1
CUX1-202ENST00000292538 HIGD1BQ9P298 99 aa8.2□□□□□ -1.1
CUX1-202ENST00000292538 UBE2D4Q9Y2X8 147 aa8.2□□□□□ -1.1
CUX1-202ENST00000292538 TRAV4A0A0B4J268 109 aa8.19□□□□□ -1.1
CUX1-202ENST00000292538 PLAC8L1A1L4L8 177 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms