RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 TRBV6-5A0A0K0K1A5 114 aa8.92□□□□□ -0.98
VPS28-201ENST00000292510 A0A1B0GW15 77 aa8.92□□□□□ -0.98
VPS28-201ENST00000292510 PSCAO43653 123 aa8.92□□□□□ -0.98
VPS28-201ENST00000292510 FUSP35637 526 aaKnown RBP eCLIP8.92□□□□□ -0.98
VPS28-201ENST00000292510 AMTP48728 403 aa8.92□□□□□ -0.98
VPS28-201ENST00000292510 RBX1P62877 108 aa8.92□□□□□ -0.98
VPS28-201ENST00000292510 SPATA12Q7Z6I5 190 aa8.92□□□□□ -0.98
VPS28-201ENST00000292510 TMEM70Q9BUB7 260 aa8.92□□□□□ -0.98
VPS28-201ENST00000292510 ST20Q9HBF5 79 aa8.92□□□□□ -0.98
VPS28-201ENST00000292510 KIAA1109Q2LD37 5005 aa8.92□□□□□ -0.98
VPS28-201ENST00000292510 TRAV8-3A0A0A6YYJ7 113 aa8.91□□□□□ -0.98
VPS28-201ENST00000292510 ANGP03950 147 aaKnown RBP8.91□□□□□ -0.98
VPS28-201ENST00000292510 ELOBQ15370 118 aa8.91□□□□□ -0.98
VPS28-201ENST00000292510 NRACQ8N912 160 aa8.91□□□□□ -0.98
VPS28-201ENST00000292510 I3L3M4 83 aa8.9□□□□□ -0.98
VPS28-201ENST00000292510 S100A8P05109 93 aa8.9□□□□□ -0.98
VPS28-201ENST00000292510 PMCHP20382 165 aa8.9□□□□□ -0.98
VPS28-201ENST00000292510 POLR2KP53803 58 aaKnown RBP8.9□□□□□ -0.98
VPS28-201ENST00000292510 PKIAP61925 76 aa8.9□□□□□ -0.98
VPS28-201ENST00000292510 CLPSL2Q6UWE3 100 aa8.9□□□□□ -0.98
VPS28-201ENST00000292510 ENHOQ6UWT2 76 aa8.9□□□□□ -0.98
VPS28-201ENST00000292510 ATP5L2Q7Z4Y8 100 aa8.9□□□□□ -0.98
VPS28-201ENST00000292510 TMEM242Q9NWH2 141 aa8.9□□□□□ -0.98
VPS28-201ENST00000292510 IGLV4-60A0A075B6I1 120 aa8.89□□□□□ -0.99
VPS28-201ENST00000292510 IGKV2D-24A0A075B6R9 120 aa8.89□□□□□ -0.99
VPS28-201ENST00000292510 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.89□□□□□ -0.99
VPS28-201ENST00000292510 IGKV2-29A2NJV5 120 aaPredicted RBP8.89□□□□□ -0.99
VPS28-201ENST00000292510 UBE2L6O14933 153 aa8.89□□□□□ -0.99
VPS28-201ENST00000292510 APCSP02743 223 aa8.89□□□□□ -0.99
VPS28-201ENST00000292510 C10orf91Q5T1B1 145 aa8.89□□□□□ -0.99
VPS28-201ENST00000292510 TM2D2Q9BX73 214 aa8.89□□□□□ -0.99
VPS28-201ENST00000292510 HERC2O95714 4834 aa8.88□□□□□ -0.99
VPS28-201ENST00000292510 LRCOL1A6NCL2 159 aa8.88□□□□□ -0.99
VPS28-201ENST00000292510 C16orf90A8MZG2 172 aa8.88□□□□□ -0.99
VPS28-201ENST00000292510 D6R8Y8 96 aa8.88□□□□□ -0.99
VPS28-201ENST00000292510 TSHBP01222 138 aa8.88□□□□□ -0.99
VPS28-201ENST00000292510 CRPP02741 224 aa8.88□□□□□ -0.99
VPS28-201ENST00000292510 CKS2P33552 79 aa8.88□□□□□ -0.99
VPS28-201ENST00000292510 WFDC2Q14508 124 aa8.88□□□□□ -0.99
VPS28-201ENST00000292510 LINC00269Q8N2A0 174 aa8.88□□□□□ -0.99
VPS28-201ENST00000292510 MAPKAPK5-AS1Q8N8E1 139 aa8.88□□□□□ -0.99
VPS28-201ENST00000292510 C20orf203Q8NBC4 194 aa8.88□□□□□ -0.99
VPS28-201ENST00000292510 CARHSP1Q9Y2V2 147 aaKnown RBP8.88□□□□□ -0.99
VPS28-201ENST00000292510 TRBV27A0A0K0K1C4 114 aa8.87□□□□□ -0.99
VPS28-201ENST00000292510 EREGO14944 169 aa8.87□□□□□ -0.99
VPS28-201ENST00000292510 LECT2O14960 151 aa8.87□□□□□ -0.99
VPS28-201ENST00000292510 SUMO2P61956 95 aaKnown RBP8.87□□□□□ -0.99
VPS28-201ENST00000292510 Q0VG73 95 aa8.87□□□□□ -0.99
VPS28-201ENST00000292510 BTF3L4Q96K17 158 aa8.87□□□□□ -0.99
VPS28-201ENST00000292510 CTDSP1Q9GZU7 261 aa8.87□□□□□ -0.99
VPS28-201ENST00000292510 RYR1P21817 5038 aa8.87□□□□□ -0.99
VPS28-201ENST00000292510 A0A1B0GUV1 79 aa8.86□□□□□ -0.99
VPS28-201ENST00000292510 C7orf77A4D0Y5 90 aa8.86□□□□□ -0.99
VPS28-201ENST00000292510 TNFRSF6BO95407 300 aa8.86□□□□□ -0.99
VPS28-201ENST00000292510 PPP1R17O96001 155 aa8.86□□□□□ -0.99
VPS28-201ENST00000292510 NPYP01303 97 aa8.86□□□□□ -0.99
VPS28-201ENST00000292510 CLRN3Q8NCR9 226 aa8.86□□□□□ -0.99
VPS28-201ENST00000292510 BAALCQ8WXS3 180 aa8.86□□□□□ -0.99
VPS28-201ENST00000292510 RMI2Q96E14 147 aa8.86□□□□□ -0.99
VPS28-201ENST00000292510 IMMP2LQ96T52 175 aa8.86□□□□□ -0.99
VPS28-201ENST00000292510 PRR34Q9NV39 138 aa8.86□□□□□ -0.99
VPS28-201ENST00000292510 APOBP04114 4563 aaKnown RBP8.85□□□□□ -0.99
VPS28-201ENST00000292510 TRBV24-1A0A075B6N3 115 aa8.85□□□□□ -0.99
VPS28-201ENST00000292510 VCYO14598 125 aa8.85□□□□□ -0.99
VPS28-201ENST00000292510 ESDP10768 282 aa8.85□□□□□ -0.99
VPS28-201ENST00000292510 REG3AQ06141 175 aa8.85□□□□□ -0.99
VPS28-201ENST00000292510 RNASEKQ6P5S7 137 aaKnown RBP8.85□□□□□ -0.99
VPS28-201ENST00000292510 C1orf43Q9BWL3 253 aa8.85□□□□□ -0.99
VPS28-201ENST00000292510 IGLV10-54A0A075B6I4 117 aa8.84□□□□□ -0.99
VPS28-201ENST00000292510 FGF6P10767 208 aa8.84□□□□□ -0.99
VPS28-201ENST00000292510 FCER1GP30273 86 aa8.84□□□□□ -0.99
VPS28-201ENST00000292510 MIAQ16674 131 aa8.84□□□□□ -0.99
VPS28-201ENST00000292510 AMMECR1LQ6DCA0 310 aa8.84□□□□□ -0.99
VPS28-201ENST00000292510 TMEM136Q6ZRR5 245 aa8.84□□□□□ -0.99
VPS28-201ENST00000292510 C20orf78Q9BR46 151 aa8.84□□□□□ -0.99
VPS28-201ENST00000292510 RPS10P5Q9NQ39 176 aa8.84□□□□□ -0.99
VPS28-201ENST00000292510 COX11Q9Y6N1 276 aa8.84□□□□□ -0.99
VPS28-201ENST00000292510 APOC3P02656 99 aa8.83□□□□□ -1
VPS28-201ENST00000292510 PPBPP02775 128 aa8.83□□□□□ -1
VPS28-201ENST00000292510 ORMDL3Q8N138 153 aa8.83□□□□□ -1
VPS28-201ENST00000292510 Q8N814 137 aa8.83□□□□□ -1
VPS28-201ENST00000292510 PRELID3AQ96N28 172 aa8.83□□□□□ -1
VPS28-201ENST00000292510 IGKV3OR2-268A0A0C4DH90 116 aa8.82□□□□□ -1
VPS28-201ENST00000292510 H7C423 109 aa8.82□□□□□ -1
VPS28-201ENST00000292510 HLA-DQA1P01909 254 aa8.82□□□□□ -1
VPS28-201ENST00000292510 RHEBQ15382 184 aa8.82□□□□□ -1
VPS28-201ENST00000292510 KIR2DL4Q99706 377 aa8.82□□□□□ -1
VPS28-201ENST00000292510 SMIM2Q9BVW6 85 aa8.82□□□□□ -1
VPS28-201ENST00000292510 PGPEP1Q9NXJ5 209 aa8.82□□□□□ -1
VPS28-201ENST00000292510 S100PP25815 95 aa8.81□□□□□ -1
VPS28-201ENST00000292510 RPL32P62910 135 aaKnown RBP8.81□□□□□ -1
VPS28-201ENST00000292510 KRTAP26-1Q6PEX3 210 aa8.81□□□□□ -1
VPS28-201ENST00000292510 HSPG2P98160 4391 aa8.8□□□□□ -1
VPS28-201ENST00000292510 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.8□□□□□ -1
VPS28-201ENST00000292510 TRAV9-1A0A075B6T8 112 aa8.8□□□□□ -1
VPS28-201ENST00000292510 PHOX2AO14813 284 aa8.8□□□□□ -1
VPS28-201ENST00000292510 TCAPO15273 167 aa8.8□□□□□ -1
VPS28-201ENST00000292510 CDPF1Q6NVV7 123 aa8.8□□□□□ -1
VPS28-201ENST00000292510 IGLV5-52A0A0A0MRZ9 124 aa8.79□□□□□ -1
VPS28-201ENST00000292510 LOC389332A0A1B0GUA5 103 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms