RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP3.03□□□□□ -1.92
CD44-202ENST00000278385 FBN1P35555 2871 aaKnown RBP3.02□□□□□ -1.93
CD44-202ENST00000278385 TRBV24-1A0A075B6N3 115 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 LOC107986453A0A1B0GWG9 222 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 A6NED7 52 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 H3BSH0 61 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 GEMIN2O14893 280 aaKnown RBP3.02□□□□□ -1.93
CD44-202ENST00000278385 SLC25A20O43772 301 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 SH2D1AO60880 128 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 ZNF737O75373 536 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 MT-ND6P03923 174 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 TRGV3P03979 118 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 TFF1P04155 84 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 GZMBP10144 247 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 IFITM1P13164 125 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 CCL3L1P16619 93 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 EDDM3BP56851 147 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 ZNF90Q03938 601 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 KLRD1Q13241 179 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 C9orf129Q5T035 196 aaKnown RBP3.02□□□□□ -1.93
CD44-202ENST00000278385 MINOS1Q5TGZ0 78 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 LINC01545Q5VT33 79 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 MRPL54Q6P161 138 aaKnown RBP3.02□□□□□ -1.93
CD44-202ENST00000278385 ZNF705AQ6ZN79 300 aaPredicted RBP3.02□□□□□ -1.93
CD44-202ENST00000278385 SLC25A26Q70HW3 274 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 POM121L12Q8N7R1 296 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 COPS9Q8WXC6 57 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 ZNF714Q96N38 554 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 SCGB3A1Q96QR1 104 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 AGPAT4-IT1Q9H0P7 198 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 SLC35B3Q9H1N7 401 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 LSM2Q9Y333 95 aaKnown RBP3.02□□□□□ -1.93
CD44-202ENST00000278385 LINC00312Q9Y6C7 94 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 MINOS1-NBL1R4GNA1 71 aa3.02□□□□□ -1.93
CD44-202ENST00000278385 TRBV20-1A0A075B6N2 111 aa3.01□□□□□ -1.93
CD44-202ENST00000278385 H3BUX3 64 aa3.01□□□□□ -1.93
CD44-202ENST00000278385 CTSDP07339 412 aaPredicted RBP3.01□□□□□ -1.93
CD44-202ENST00000278385 PIPP12273 146 aaPredicted RBP3.01□□□□□ -1.93
CD44-202ENST00000278385 PRB3Q04118 309 aaPredicted RBP3.01□□□□□ -1.93
CD44-202ENST00000278385 PATE2Q6UY27 113 aa3.01□□□□□ -1.93
CD44-202ENST00000278385 SOSTDC1Q6X4U4 206 aa3.01□□□□□ -1.93
CD44-202ENST00000278385 OR5AK2Q8NH90 309 aa3.01□□□□□ -1.93
CD44-202ENST00000278385 GINS4Q9BRT9 223 aa3.01□□□□□ -1.93
CD44-202ENST00000278385 PRO1933Q9H354 126 aa3.01□□□□□ -1.93
CD44-202ENST00000278385 TANC2Q9HCD6 1990 aa3.01□□□□□ -1.93
CD44-202ENST00000278385 MAP1AP78559 2803 aaPredicted RBP3.01□□□□□ -1.93
CD44-202ENST00000278385 ZANQ9Y493 2812 aa3□□□□□ -1.93
CD44-202ENST00000278385 A0A0D9SG52 128 aa3□□□□□ -1.93
CD44-202ENST00000278385 GRIFINA4D1Z8 144 aa3□□□□□ -1.93
CD44-202ENST00000278385 ODF3BA8MYP8 253 aa3□□□□□ -1.93
CD44-202ENST00000278385 OOSP1A8MZH6 123 aa3□□□□□ -1.93
CD44-202ENST00000278385 H3BMM0 161 aa3□□□□□ -1.93
CD44-202ENST00000278385 NPYP01303 97 aa3□□□□□ -1.93
CD44-202ENST00000278385 KRTAP10-3P60369 221 aa3□□□□□ -1.93
CD44-202ENST00000278385 EBI3Q14213 229 aa3□□□□□ -1.93
CD44-202ENST00000278385 CDK5R1Q15078 307 aa3□□□□□ -1.93
CD44-202ENST00000278385 LY6EQ16553 131 aa3□□□□□ -1.93
CD44-202ENST00000278385 MIAQ16674 131 aa3□□□□□ -1.93
CD44-202ENST00000278385 Q56UQ5 140 aa3□□□□□ -1.93
CD44-202ENST00000278385 CLLU1Q5K131 121 aa3□□□□□ -1.93
CD44-202ENST00000278385 Q6P435 159 aa3□□□□□ -1.93
CD44-202ENST00000278385 HEPN1Q6WQI6 88 aa3□□□□□ -1.93
CD44-202ENST00000278385 SDIM1Q6ZPB5 146 aa3□□□□□ -1.93
CD44-202ENST00000278385 Q6ZUT4 128 aa3□□□□□ -1.93
CD44-202ENST00000278385 Q8N2B8 174 aa3□□□□□ -1.93
CD44-202ENST00000278385 SVBPQ8N300 66 aa3□□□□□ -1.93
CD44-202ENST00000278385 MIR7-3HGQ8N6C7 128 aa3□□□□□ -1.93
CD44-202ENST00000278385 UBE2WQ96B02 151 aa3□□□□□ -1.93
CD44-202ENST00000278385 LINC00526Q96FQ7 95 aa3□□□□□ -1.93
CD44-202ENST00000278385 S100A13Q99584 98 aa3□□□□□ -1.93
CD44-202ENST00000278385 SEC11CQ9BY50 192 aa3□□□□□ -1.93
CD44-202ENST00000278385 FKBP11Q9NYL4 201 aa3□□□□□ -1.93
CD44-202ENST00000278385 COL6A5A8TX70 2615 aa3□□□□□ -1.93
CD44-202ENST00000278385 ATRQ13535 2644 aa3□□□□□ -1.93
CD44-202ENST00000278385 ARHGAP32A7KAX9 2087 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 C19orf71A6NCJ1 209 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 C11orf94C9JXX5 98 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 H3BT86 120 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 PITX3O75364 302 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 IGLV1-47P01700 117 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 LSM3P62310 102 aaKnown RBP2.99□□□□□ -1.93
CD44-202ENST00000278385 MPV17LQ2QL34 196 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 LCE1EQ5T753 118 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 C9orf153Q5TBE3 101 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 Q6AWC8 147 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 ZNF660Q6AZW8 331 aaPredicted RBP2.99□□□□□ -1.93
CD44-202ENST00000278385 SMCR5Q8TEV8 140 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 RBMXL1Q96E39 390 aaKnown RBP2.99□□□□□ -1.93
CD44-202ENST00000278385 MRPS24Q96EL2 167 aaKnown RBP2.99□□□□□ -1.93
CD44-202ENST00000278385 LINC00574Q9H8X3 128 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 ZNF355PQ9NSJ1 428 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 TAS2R4Q9NYW5 299 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 HILPDAQ9Y5L2 63 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 SERP1Q9Y6X1 66 aa2.99□□□□□ -1.93
CD44-202ENST00000278385 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.98□□□□□ -1.93
CD44-202ENST00000278385 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.98□□□□□ -1.93
CD44-202ENST00000278385 C3orf85A0A1B0GTC6 90 aa2.98□□□□□ -1.93
CD44-202ENST00000278385 SMIM31A0A1B0GVY4 71 aa2.98□□□□□ -1.93
CD44-202ENST00000278385 MCRIP1C9JLW8 97 aa2.98□□□□□ -1.93
CD44-202ENST00000278385 TCL1BO95988 128 aa2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms