RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 MED14OSP0DP75 135 aa9.4□□□□□ -0.91
LIG1-201ENST00000263274 VPREB3Q9UKI3 123 aa9.4□□□□□ -0.91
LIG1-201ENST00000263274 PRRC2AP48634 2157 aaKnown RBP9.39□□□□□ -0.91
LIG1-201ENST00000263274 KMT2BQ9UMN6 2715 aaPredicted RBP9.39□□□□□ -0.91
LIG1-201ENST00000263274 IGHV3-16A0A0C4DH30 117 aa9.39□□□□□ -0.91
LIG1-201ENST00000263274 IGHV3-38A0A0C4DH36 116 aa9.39□□□□□ -0.91
LIG1-201ENST00000263274 TCL1BO95988 128 aa9.39□□□□□ -0.91
LIG1-201ENST00000263274 DEFB131AP59861 70 aa9.39□□□□□ -0.91
LIG1-201ENST00000263274 TEN1Q86WV5 123 aa9.39□□□□□ -0.91
LIG1-201ENST00000263274 CFC1BP0CG36 223 aa9.39□□□□□ -0.91
LIG1-201ENST00000263274 CFC1P0CG37 223 aa9.39□□□□□ -0.91
LIG1-201ENST00000263274 KLK9Q2XQG4 91 aa9.39□□□□□ -0.91
LIG1-201ENST00000263274 JMJD1CQ15652 2540 aa9.39□□□□□ -0.91
LIG1-201ENST00000263274 A0A0J9YX75 114 aa9.38□□□□□ -0.91
LIG1-201ENST00000263274 A0A0U1RRA0 63 aa9.38□□□□□ -0.91
LIG1-201ENST00000263274 C9JAW5 83 aa9.38□□□□□ -0.91
LIG1-201ENST00000263274 H3BUA1 57 aa9.38□□□□□ -0.91
LIG1-201ENST00000263274 HIST2H2BCQ6DN03 193 aa9.38□□□□□ -0.91
LIG1-201ENST00000263274 CARD19Q96LW7 228 aa9.38□□□□□ -0.91
LIG1-201ENST00000263274 PRO1854Q9UHT4 67 aa9.38□□□□□ -0.91
LIG1-201ENST00000263274 IGHV4OR15-8A0A075B7B6 117 aa9.38□□□□□ -0.91
LIG1-201ENST00000263274 A0A087WW49 117 aa9.38□□□□□ -0.91
LIG1-201ENST00000263274 COX6B1P14854 86 aa9.38□□□□□ -0.91
LIG1-201ENST00000263274 C5orf47Q569G3 176 aa9.38□□□□□ -0.91
LIG1-201ENST00000263274 TRPT1Q86TN4 253 aaKnown RBP9.38□□□□□ -0.91
LIG1-201ENST00000263274 M0QY20 66 aa9.38□□□□□ -0.91
LIG1-201ENST00000263274 IGLV1-40P01703 118 aa9.38□□□□□ -0.91
LIG1-201ENST00000263274 TRAV8-3A0A0A6YYJ7 113 aa9.37□□□□□ -0.91
LIG1-201ENST00000263274 MUSTN1Q8IVN3 82 aa9.37□□□□□ -0.91
LIG1-201ENST00000263274 ANKRD29Q8N6D5 301 aa9.37□□□□□ -0.91
LIG1-201ENST00000263274 ATP6V0E2Q8NHE4 81 aa9.37□□□□□ -0.91
LIG1-201ENST00000263274 FAM19A4Q96LR4 140 aa9.37□□□□□ -0.91
LIG1-201ENST00000263274 C11orf44Q8N8P7 122 aa9.37□□□□□ -0.91
LIG1-201ENST00000263274 TIMM17AQ99595 171 aa9.37□□□□□ -0.91
LIG1-201ENST00000263274 ITPR2Q14571 2701 aa9.37□□□□□ -0.91
LIG1-201ENST00000263274 I3L3M4 83 aa9.37□□□□□ -0.91
LIG1-201ENST00000263274 UBE2D1P51668 147 aa9.37□□□□□ -0.91
LIG1-201ENST00000263274 CRIP2P52943 208 aaPredicted RBP9.37□□□□□ -0.91
LIG1-201ENST00000263274 C10orf126Q8N4M7 172 aa9.37□□□□□ -0.91
LIG1-201ENST00000263274 HOXD3P31249 432 aaPredicted RBP9.36□□□□□ -0.91
LIG1-201ENST00000263274 SETXQ7Z333 2677 aaKnown RBP9.36□□□□□ -0.91
LIG1-201ENST00000263274 TRBV27A0A0K0K1C4 114 aa9.36□□□□□ -0.91
LIG1-201ENST00000263274 A8MZ25 164 aa9.36□□□□□ -0.91
LIG1-201ENST00000263274 TMEM262E9PQX1 116 aa9.36□□□□□ -0.91
LIG1-201ENST00000263274 IGHV3-30P01768 117 aa9.36□□□□□ -0.91
LIG1-201ENST00000263274 IGHV3-30-5P0DP03 117 aa9.36□□□□□ -0.91
LIG1-201ENST00000263274 NDUFV3P56181 108 aaKnown RBP9.36□□□□□ -0.91
LIG1-201ENST00000263274 SLC25A29Q8N8R3 303 aa9.36□□□□□ -0.91
LIG1-201ENST00000263274 TRAV4A0A0B4J268 109 aa9.35□□□□□ -0.91
LIG1-201ENST00000263274 K7EMT4 169 aa9.35□□□□□ -0.91
LIG1-201ENST00000263274 DGAT2L7PQ6IED9 249 aa9.35□□□□□ -0.91
LIG1-201ENST00000263274 SLURP1P55000 103 aa9.35□□□□□ -0.91
LIG1-201ENST00000263274 C20orf203Q8NBC4 194 aa9.35□□□□□ -0.91
LIG1-201ENST00000263274 Q9UF83 564 aa9.35□□□□□ -0.91
LIG1-201ENST00000263274 LGALS9O00182 355 aa9.35□□□□□ -0.91
LIG1-201ENST00000263274 IFITM1P13164 125 aa9.35□□□□□ -0.91
LIG1-201ENST00000263274 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.34□□□□□ -0.91
LIG1-201ENST00000263274 IGKV2-29A2NJV5 120 aaPredicted RBP9.34□□□□□ -0.91
LIG1-201ENST00000263274 PSMB8P28062 276 aa9.34□□□□□ -0.91
LIG1-201ENST00000263274 LINC01587Q99440 93 aa9.34□□□□□ -0.91
LIG1-201ENST00000263274 K7EQG2 157 aa9.34□□□□□ -0.91
LIG1-201ENST00000263274 C18orf65Q6ZTR6 163 aa9.34□□□□□ -0.91
LIG1-201ENST00000263274 ZNF625Q96I27 306 aaPredicted RBP9.34□□□□□ -0.91
LIG1-201ENST00000263274 TIMM21Q9BVV7 248 aa9.34□□□□□ -0.91
LIG1-201ENST00000263274 RHODO00212 210 aa9.33□□□□□ -0.92
LIG1-201ENST00000263274 NHLRC4P0CG21 123 aaPredicted RBP9.33□□□□□ -0.92
LIG1-201ENST00000263274 ZNF22P17026 224 aaPredicted RBP9.33□□□□□ -0.92
LIG1-201ENST00000263274 APRG1Q8IVJ8 170 aa9.33□□□□□ -0.92
LIG1-201ENST00000263274 BAHCC1Q9P281 2608 aa9.33□□□□□ -0.92
LIG1-201ENST00000263274 TRGV11A0A075B6L2 103 aa9.33□□□□□ -0.92
LIG1-201ENST00000263274 LINC01619G3V211 115 aa9.33□□□□□ -0.92
LIG1-201ENST00000263274 MEIG1Q5JSS6 88 aa9.33□□□□□ -0.92
LIG1-201ENST00000263274 CRLF1O75462 422 aa9.33□□□□□ -0.92
LIG1-201ENST00000263274 C9orf85Q96MD7 179 aa9.33□□□□□ -0.92
LIG1-201ENST00000263274 CSDC2Q9Y534 153 aaKnown RBP9.33□□□□□ -0.92
LIG1-201ENST00000263274 IGLV4-3A0A075B6K6 122 aa9.32□□□□□ -0.92
LIG1-201ENST00000263274 LEPROTO15243 131 aa9.32□□□□□ -0.92
LIG1-201ENST00000263274 SLC25A20O43772 301 aa9.32□□□□□ -0.92
LIG1-201ENST00000263274 NXPH4O95158 308 aa9.32□□□□□ -0.92
LIG1-201ENST00000263274 DAND5Q8N907 189 aa9.32□□□□□ -0.92
LIG1-201ENST00000263274 DYNLRB2Q8TF09 96 aa9.32□□□□□ -0.92
LIG1-201ENST00000263274 UBE2E2Q96LR5 201 aa9.32□□□□□ -0.92
LIG1-201ENST00000263274 TMEM223A0PJW6 202 aa9.31□□□□□ -0.92
LIG1-201ENST00000263274 IGHV3-30-3P0DP02 117 aa9.31□□□□□ -0.92
LIG1-201ENST00000263274 RHOHQ15669 191 aa9.31□□□□□ -0.92
LIG1-201ENST00000263274 TEX15Q9BXT5 2789 aa9.31□□□□□ -0.92
LIG1-201ENST00000263274 A0A1W2PRX2 142 aa9.3□□□□□ -0.92
LIG1-201ENST00000263274 IGHV3-53P01767 116 aa9.3□□□□□ -0.92
LIG1-201ENST00000263274 MRPL23Q16540 153 aaKnown RBP9.3□□□□□ -0.92
LIG1-201ENST00000263274 NDUFA12Q9UI09 145 aa9.3□□□□□ -0.92
LIG1-201ENST00000263274 UBE2D3P61077 147 aa9.3□□□□□ -0.92
LIG1-201ENST00000263274 UBE2D2P62837 147 aa9.3□□□□□ -0.92
LIG1-201ENST00000263274 Q6ZSV7 163 aa9.3□□□□□ -0.92
LIG1-201ENST00000263274 NTN5Q8WTR8 489 aaPredicted RBP9.3□□□□□ -0.92
LIG1-201ENST00000263274 XCL2Q9UBD3 114 aa9.3□□□□□ -0.92
LIG1-201ENST00000263274 FN1P02751 2386 aaKnown RBP9.3□□□□□ -0.92
LIG1-201ENST00000263274 TRBV6-5A0A0K0K1A5 114 aa9.3□□□□□ -0.92
LIG1-201ENST00000263274 RBMY1A1P0DJD3 496 aaKnown RBP9.29□□□□□ -0.92
LIG1-201ENST00000263274 RBMY1CP0DJD4 496 aa9.29□□□□□ -0.92
LIG1-201ENST00000263274 RBMY1FQ15415 496 aaKnown RBP9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 132 ms