RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 OTOGLQ3ZCN5 2332 aa14.48□□□□□ -0.09
UPF1-201ENST00000262803 SEC61GP60059 68 aa14.48□□□□□ -0.09
UPF1-201ENST00000262803 NFE4Q86UQ8 179 aa14.48□□□□□ -0.09
UPF1-201ENST00000262803 HIVEP2P31629 2446 aa14.47□□□□□ -0.09
UPF1-201ENST00000262803 EIF4EBP1Q13541 118 aaPredicted RBP14.47□□□□□ -0.09
UPF1-201ENST00000262803 GDF5OSQ5U4N7 250 aa14.47□□□□□ -0.09
UPF1-201ENST00000262803 PLXNB1O43157 2135 aa14.47□□□□□ -0.09
UPF1-201ENST00000262803 IGHV4-28A0A0C4DH34 117 aa14.46□□□□□ -0.09
UPF1-201ENST00000262803 DEFB114Q30KQ6 69 aa14.46□□□□□ -0.09
UPF1-201ENST00000262803 MIAQ16674 131 aa14.46□□□□□ -0.09
UPF1-201ENST00000262803 WFDC9Q8NEX5 89 aa14.46□□□□□ -0.09
UPF1-201ENST00000262803 MLST8Q9BVC4 326 aa14.46□□□□□ -0.09
UPF1-201ENST00000262803 REG3AQ06141 175 aa14.46□□□□□ -0.09
UPF1-201ENST00000262803 SPATA12Q7Z6I5 190 aa14.46□□□□□ -0.09
UPF1-201ENST00000262803 MYO18BQ8IUG5 2567 aa14.46□□□□□ -0.09
UPF1-201ENST00000262803 LINC01548A6NM66 108 aa14.45□□□□□ -0.1
UPF1-201ENST00000262803 C22orf34Q6ZV56 151 aa14.45□□□□□ -0.1
UPF1-201ENST00000262803 ALPK3Q96L96 1907 aa14.44□□□□□ -0.1
UPF1-201ENST00000262803 TRAV26-1A0A087WT03 109 aa14.42□□□□□ -0.1
UPF1-201ENST00000262803 CRYGDP07320 174 aa14.42□□□□□ -0.1
UPF1-201ENST00000262803 DEFB131BA0A096LNP1 70 aa14.42□□□□□ -0.1
UPF1-201ENST00000262803 TRAV10A0A0B4J240 114 aa14.42□□□□□ -0.1
UPF1-201ENST00000262803 MBD6Q96DN6 1003 aa14.42□□□□□ -0.1
UPF1-201ENST00000262803 DSCAML1Q8TD84 2053 aa14.41□□□□□ -0.1
UPF1-201ENST00000262803 TRBV6-4A0A1B0GX49 114 aa14.41□□□□□ -0.1
UPF1-201ENST00000262803 DEFB4AO15263 64 aa14.41□□□□□ -0.1
UPF1-201ENST00000262803 FAM222AQ5U5X8 452 aa14.41□□□□□ -0.1
UPF1-201ENST00000262803 B5MCH6 92 aa14.41□□□□□ -0.1
UPF1-201ENST00000262803 NDUFC2O95298 119 aa14.41□□□□□ -0.1
UPF1-201ENST00000262803 SORL1Q92673 2214 aa14.41□□□□□ -0.1
UPF1-201ENST00000262803 IGLC6P0CF74 106 aa14.41□□□□□ -0.1
UPF1-201ENST00000262803 A0A0J9YXY3 114 aa14.4□□□□□ -0.1
UPF1-201ENST00000262803 HIST2H2BDQ6DRA6 164 aa14.4□□□□□ -0.1
UPF1-201ENST00000262803 Q6ZUT4 128 aa14.4□□□□□ -0.1
UPF1-201ENST00000262803 C7orf33Q8WU49 177 aa14.39□□□□□ -0.11
UPF1-201ENST00000262803 H0Y9J4 135 aa14.39□□□□□ -0.11
UPF1-201ENST00000262803 C2CD3Q4AC94 2353 aa14.39□□□□□ -0.11
UPF1-201ENST00000262803 FOXI1Q12951 378 aa14.39□□□□□ -0.11
UPF1-201ENST00000262803 IBA57-AS1B1ANH7 110 aa14.39□□□□□ -0.11
UPF1-201ENST00000262803 CHCHD10Q8WYQ3 142 aaPredicted RBP14.38□□□□□ -0.11
UPF1-201ENST00000262803 ZNF706Q9Y5V0 76 aaPredicted RBP14.38□□□□□ -0.11
UPF1-201ENST00000262803 C14orf132Q9NPU4 83 aa14.38□□□□□ -0.11
UPF1-201ENST00000262803 PSMG3-AS1Q96PY0 264 aa14.38□□□□□ -0.11
UPF1-201ENST00000262803 Q6ZTI0 123 aa14.37□□□□□ -0.11
UPF1-201ENST00000262803 ATP5EP2Q5VTU8 51 aa14.37□□□□□ -0.11
UPF1-201ENST00000262803 CRYGBP07316 175 aa14.37□□□□□ -0.11
UPF1-201ENST00000262803 C5orf47Q569G3 176 aa14.37□□□□□ -0.11
UPF1-201ENST00000262803 LINC00269Q8N2A0 174 aa14.37□□□□□ -0.11
UPF1-201ENST00000262803 UPK3BQ9BT76 320 aa14.37□□□□□ -0.11
UPF1-201ENST00000262803 CEMP1Q6PRD7 247 aaPredicted RBP14.36□□□□□ -0.11
UPF1-201ENST00000262803 C11orf71Q6IPW1 123 aa14.36□□□□□ -0.11
UPF1-201ENST00000262803 YPEL4Q96NS1 127 aa14.36□□□□□ -0.11
UPF1-201ENST00000262803 CLEC2BQ92478 149 aa14.36□□□□□ -0.11
UPF1-201ENST00000262803 C19orf84I3L1E1 186 aa14.35□□□□□ -0.11
UPF1-201ENST00000262803 Q6ZSV7 163 aa14.35□□□□□ -0.11
UPF1-201ENST00000262803 IGKV3D-7A0A0C4DH55 119 aa14.35□□□□□ -0.11
UPF1-201ENST00000262803 SRCAPQ6ZRS2 3230 aa14.35□□□□□ -0.11
UPF1-201ENST00000262803 LY6LH3BQJ8 138 aa14.35□□□□□ -0.11
UPF1-201ENST00000262803 MUC7Q8TAX7 377 aa14.35□□□□□ -0.11
UPF1-201ENST00000262803 LINC00643Q86TS7 51 aa14.34□□□□□ -0.11
UPF1-201ENST00000262803 SPANXB1Q9NS25 103 aaPredicted RBP14.34□□□□□ -0.11
UPF1-201ENST00000262803 BPY2O14599 106 aa14.34□□□□□ -0.11
UPF1-201ENST00000262803 TP53TG3Q9ULZ0 132 aa14.34□□□□□ -0.11
UPF1-201ENST00000262803 WFDC11Q8NEX6 87 aa14.34□□□□□ -0.11
UPF1-201ENST00000262803 COL4A4P53420 1690 aaPredicted RBP14.33□□□□□ -0.12
UPF1-201ENST00000262803 INAFM1C9JVW0 142 aa14.33□□□□□ -0.12
UPF1-201ENST00000262803 PTH2Q96A98 100 aa14.33□□□□□ -0.12
UPF1-201ENST00000262803 ZNF843Q8N446 348 aa14.32□□□□□ -0.12
UPF1-201ENST00000262803 IGKV2-24A0A0C4DH68 120 aa14.32□□□□□ -0.12
UPF1-201ENST00000262803 CCDC168Q8NDH2 2452 aa14.32□□□□□ -0.12
UPF1-201ENST00000262803 P0DMU3 169 aa14.31□□□□□ -0.12
UPF1-201ENST00000262803 FAM231AP0DMU4 169 aa14.31□□□□□ -0.12
UPF1-201ENST00000262803 FAM231CP0DMU5 169 aa14.31□□□□□ -0.12
UPF1-201ENST00000262803 FAM19A1Q7Z5A9 133 aa14.31□□□□□ -0.12
UPF1-201ENST00000262803 TRBV6-8A0A0A6YYG3 113 aa14.31□□□□□ -0.12
UPF1-201ENST00000262803 FAM236AA0A1B0GUQ0 79 aa14.31□□□□□ -0.12
UPF1-201ENST00000262803 FAM236BA0A1B0GV22 79 aa14.31□□□□□ -0.12
UPF1-201ENST00000262803 G3V4G9 280 aa14.31□□□□□ -0.12
UPF1-201ENST00000262803 HIGD2AQ9BW72 106 aa14.31□□□□□ -0.12
UPF1-201ENST00000262803 SS18L2Q9UHA2 77 aa14.31□□□□□ -0.12
UPF1-201ENST00000262803 NAV2Q8IVL1 2488 aa14.31□□□□□ -0.12
UPF1-201ENST00000262803 CRIP1P50238 77 aa14.3□□□□□ -0.12
UPF1-201ENST00000262803 PRO3102Q9H379 93 aa14.3□□□□□ -0.12
UPF1-201ENST00000262803 TP73-AS1Q9UF72 201 aa14.3□□□□□ -0.12
UPF1-201ENST00000262803 NEXN-AS1Q8NBZ9 246 aa14.3□□□□□ -0.12
UPF1-201ENST00000262803 PYGO1Q9Y3Y4 419 aa14.3□□□□□ -0.12
UPF1-201ENST00000262803 ZFAND3Q9H8U3 227 aa14.29□□□□□ -0.12
UPF1-201ENST00000262803 NAV3Q8IVL0 2385 aa14.29□□□□□ -0.12
UPF1-201ENST00000262803 SYCNQ0VAF6 134 aa14.29□□□□□ -0.12
UPF1-201ENST00000262803 J3KT08 172 aa14.29□□□□□ -0.12
UPF1-201ENST00000262803 KIAA1549Q9HCM3 1950 aa14.28□□□□□ -0.12
UPF1-201ENST00000262803 C20orf173Q96LM9 149 aa14.28□□□□□ -0.12
UPF1-201ENST00000262803 A0A087WZ39 114 aa14.28□□□□□ -0.12
UPF1-201ENST00000262803 CFAP126Q5VTH2 177 aa14.28□□□□□ -0.12
UPF1-201ENST00000262803 TRBV6-5A0A0K0K1A5 114 aa14.28□□□□□ -0.12
UPF1-201ENST00000262803 PIEZO2Q9H5I5 2752 aa14.28□□□□□ -0.12
UPF1-201ENST00000262803 HIVEP3Q5T1R4 2406 aa14.28□□□□□ -0.12
UPF1-201ENST00000262803 PIK3CD-AS1Q5SR53 167 aa14.27□□□□□ -0.12
UPF1-201ENST00000262803 MRGPRG-AS1Q2M3A8 158 aa14.27□□□□□ -0.12
UPF1-201ENST00000262803 LINC00467Q9BRT7 94 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms