RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 LINC00482Q8N8I6 264 aa4.01□□□□□ -1.77
TOPBP1-201ENST00000260810 CITED2Q99967 270 aaPredicted RBP4.01□□□□□ -1.77
TOPBP1-201ENST00000260810 CNFNQ9BYD5 112 aa4.01□□□□□ -1.77
TOPBP1-201ENST00000260810 TMEM160Q9NX00 188 aa4.01□□□□□ -1.77
TOPBP1-201ENST00000260810 TRBV19A0A075B6N1 114 aa4.01□□□□□ -1.77
TOPBP1-201ENST00000260810 KLLNB2CW77 178 aa4.01□□□□□ -1.77
TOPBP1-201ENST00000260810 I3L3M4 83 aa4.01□□□□□ -1.77
TOPBP1-201ENST00000260810 Q6ZVH6 145 aa4.01□□□□□ -1.77
TOPBP1-201ENST00000260810 RNASE1P07998 156 aaKnown RBP4.01□□□□□ -1.77
TOPBP1-201ENST00000260810 HERVK_113P63121 156 aa4.01□□□□□ -1.77
TOPBP1-201ENST00000260810 KPRPQ5T749 579 aaPredicted RBP4.01□□□□□ -1.77
TOPBP1-201ENST00000260810 J3KRW8 73 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 M0R2P5 195 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 M0R381 172 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 TSPAN13O95857 204 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 TCRAP04437 139 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 LINC00173Q6ZV60 143 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 SMIM9A6NGZ8 99 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 ZFP2Q6ZN57 461 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 GATD1Q8NB37 220 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 WFDC9Q8NEX5 89 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 ODF3Q96PU9 254 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 IGKV3-7A0A075B6H7 116 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 TRBV24-1A0A075B6N3 115 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 ZNF561-AS1K7EIQ3 104 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 KRTAP3-3Q9BYR6 98 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 KRTAP3-2Q9BYR7 98 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 KRTAP1-5Q9BYS1 174 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 TRAV13-2A0A0B4J235 113 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 IGHV1-24A0A0C4DH33 117 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 LOC107984156A0A0G2JMH3 177 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 IGLC6P0CF74 106 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 ARL17AQ8IVW1 177 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 AMN1Q8IY45 258 aa4□□□□□ -1.77
TOPBP1-201ENST00000260810 IGHV1OR15-1A0A075B7D0 117 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 TRBV6-1A0A0K0K1D8 114 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 H7C423 109 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 LINC00614P0C842 121 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 KRTAP26-1Q6PEX3 210 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 NDUFA11Q86Y39 141 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 NKAPP1Q8N9T2 125 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 MUC7Q8TAX7 377 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 TMEM243Q9BU79 118 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 RHPN1-AS1Q9BWJ2 59 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 CST9LQ9H4G1 147 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 IGHV3OR16-13A0A075B7E8 117 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 IGHV3-74A0A0B4J1X5 117 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 X6R8D5 127 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 A0A1B0GV72 72 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 LINC01546A6NGU7 62 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 PRSS47A8MTI9 375 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 SPINK4O60575 86 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 EGFEM1PQ0D2K5 195 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 Q0VG73 95 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 RNASE7Q9H1E1 156 aaKnown RBP3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 ERG28Q9UKR5 140 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 TRBV20-1A0A075B6N2 111 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 IGHV3-49A0A0A0MS15 119 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 IGHV3-66A0A0C4DH42 116 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 ATOH7Q8N100 152 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 C4orf3Q8WVX3 66 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 PRR25Q96S07 402 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 ICOSQ9Y6W8 199 aa3.99□□□□□ -1.77
TOPBP1-201ENST00000260810 CDKN1BP46527 198 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 Q8N8P6 123 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 Q8TAT8 98 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 AGPAT4-IT1Q9H0P7 198 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 A0A087X0K7 114 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 HIGD1CA8MV81 97 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 LINC00469Q8N7U9 141 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 TRAV8-4A0A0B4J246 113 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 DAZ2Q13117 558 aaKnown RBP3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 MRPL23Q16540 153 aaKnown RBP3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 DAZ4Q86SG3 579 aaKnown RBP3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 Q86TA4 180 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 TMEM61Q8N0U2 210 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 DAZ3Q9NR90 486 aaKnown RBP3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 USH2AO75445 5202 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 TRGV1A0A0A0MS02 117 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 P0DMU3 169 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 FAM231AP0DMU4 169 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 FAM231CP0DMU5 169 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 C8orf86Q6ZUL3 223 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 NFE4Q86UQ8 179 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 IFI27L1Q96BM0 104 aa3.98□□□□□ -1.77
TOPBP1-201ENST00000260810 K7EQG2 157 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 CRYGDP07320 174 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 CCL18P55774 89 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 PMVKQ15126 192 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 SHISA2Q6UWI4 295 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 STPG4Q8N801 248 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 UBE2E2Q96LR5 201 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 SIVA1O15304 175 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 SPART-AS1P0CW21 52 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 IFITM1P13164 125 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 LINC00158P58513 81 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 C6orf226Q5I0X4 101 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 NRACQ8N912 160 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 AMELXQ99217 191 aa3.97□□□□□ -1.77
TOPBP1-201ENST00000260810 TIMM21Q9BVV7 248 aa3.97□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms