RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 OR10G8Q8NGN5 311 aa10.62□□□□□ -0.71
CLN3-264ENST00000637985 OR10AG1Q8NH19 301 aa10.62□□□□□ -0.71
CLN3-264ENST00000637985 C11orf52Q96A22 123 aa10.62□□□□□ -0.71
CLN3-264ENST00000637985 DAZ3Q9NR90 486 aaKnown RBP10.62□□□□□ -0.71
CLN3-264ENST00000637985 UBE2D3P61077 147 aa10.61□□□□□ -0.71
CLN3-264ENST00000637985 UBE2D2P62837 147 aa10.61□□□□□ -0.71
CLN3-264ENST00000637985 PRR27Q6MZM9 219 aa10.61□□□□□ -0.71
CLN3-264ENST00000637985 Q6ZRU5 148 aa10.61□□□□□ -0.71
CLN3-264ENST00000637985 TCTE3Q8IZS6 198 aa10.61□□□□□ -0.71
CLN3-264ENST00000637985 CHCHD7Q9BUK0 85 aa10.61□□□□□ -0.71
CLN3-264ENST00000637985 COX11Q9Y6N1 276 aa10.61□□□□□ -0.71
CLN3-264ENST00000637985 SULT1A2P50226 295 aa10.6□□□□□ -0.71
CLN3-264ENST00000637985 SPANXN1Q5VSR9 72 aa10.6□□□□□ -0.71
CLN3-264ENST00000637985 BAALCQ8WXS3 180 aa10.6□□□□□ -0.71
CLN3-264ENST00000637985 RMI2Q96E14 147 aa10.6□□□□□ -0.71
CLN3-264ENST00000637985 GAS8-AS1O95177 125 aa10.59□□□□□ -0.71
CLN3-264ENST00000637985 ELOBQ15370 118 aa10.59□□□□□ -0.71
CLN3-264ENST00000637985 ZNF56Q15929 161 aa10.59□□□□□ -0.71
CLN3-264ENST00000637985 KCNIP4Q6PIL6 250 aa10.59□□□□□ -0.71
CLN3-264ENST00000637985 SMIM12Q96EX1 92 aa10.59□□□□□ -0.71
CLN3-264ENST00000637985 DERL1Q9BUN8 251 aa10.59□□□□□ -0.71
CLN3-264ENST00000637985 A0A087WX48 190 aa10.58□□□□□ -0.72
CLN3-264ENST00000637985 CENPWQ5EE01 88 aa10.58□□□□□ -0.72
CLN3-264ENST00000637985 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.58□□□□□ -0.72
CLN3-264ENST00000637985 NEXN-AS1Q8NBZ9 246 aa10.58□□□□□ -0.72
CLN3-264ENST00000637985 PDE6DO43924 150 aa10.57□□□□□ -0.72
CLN3-264ENST00000637985 IFNA1P01562 189 aa10.57□□□□□ -0.72
CLN3-264ENST00000637985 MEF2BQ02080 365 aaPredicted RBP10.57□□□□□ -0.72
CLN3-264ENST00000637985 SLC51BQ86UW2 128 aa10.57□□□□□ -0.72
CLN3-264ENST00000637985 Q8N976 141 aa10.57□□□□□ -0.72
CLN3-264ENST00000637985 KLK12Q9UKR0 248 aa10.57□□□□□ -0.72
CLN3-264ENST00000637985 TRBV6-8A0A0A6YYG3 113 aa10.56□□□□□ -0.72
CLN3-264ENST00000637985 MUC21A0A0G2JKD1 596 aa10.56□□□□□ -0.72
CLN3-264ENST00000637985 MUC21A0A140T8X8 626 aa10.56□□□□□ -0.72
CLN3-264ENST00000637985 SMIM17P0DL12 118 aa10.56□□□□□ -0.72
CLN3-264ENST00000637985 RPS20P60866 119 aaKnown RBP10.56□□□□□ -0.72
CLN3-264ENST00000637985 AP1S3Q96PC3 154 aa10.56□□□□□ -0.72
CLN3-264ENST00000637985 F5H697 171 aa10.55□□□□□ -0.72
CLN3-264ENST00000637985 GNG4P50150 75 aa10.55□□□□□ -0.72
CLN3-264ENST00000637985 BIN3Q9NQY0 253 aa10.55□□□□□ -0.72
CLN3-264ENST00000637985 KIF25-AS1Q9Y6Z4 181 aa10.55□□□□□ -0.72
CLN3-264ENST00000637985 IGKV2D-24A0A075B6R9 120 aa10.54□□□□□ -0.72
CLN3-264ENST00000637985 XKRY2A2RUG3 117 aa10.54□□□□□ -0.72
CLN3-264ENST00000637985 C19orf71A6NCJ1 209 aa10.54□□□□□ -0.72
CLN3-264ENST00000637985 IGLC6P0CF74 106 aa10.54□□□□□ -0.72
CLN3-264ENST00000637985 TAGLN2P37802 199 aaKnown RBP10.54□□□□□ -0.72
CLN3-264ENST00000637985 PKIAP61925 76 aa10.54□□□□□ -0.72
CLN3-264ENST00000637985 Q0VG73 95 aa10.54□□□□□ -0.72
CLN3-264ENST00000637985 TMEM97Q5BJF2 176 aa10.54□□□□□ -0.72
CLN3-264ENST00000637985 FER1L6-AS1Q8NA97 138 aa10.54□□□□□ -0.72
CLN3-264ENST00000637985 OR2D3Q8NGH3 330 aa10.54□□□□□ -0.72
CLN3-264ENST00000637985 RAB19A4D1S5 217 aa10.53□□□□□ -0.72
CLN3-264ENST00000637985 TMEM262E9PQX1 116 aa10.53□□□□□ -0.72
CLN3-264ENST00000637985 BCL2P10415 239 aa10.53□□□□□ -0.72
CLN3-264ENST00000637985 SSTP61278 116 aa10.53□□□□□ -0.72
CLN3-264ENST00000637985 CACNG7P62955 275 aa10.53□□□□□ -0.72
CLN3-264ENST00000637985 ATRAIDQ6UW56 229 aa10.53□□□□□ -0.72
CLN3-264ENST00000637985 UBE2WQ96B02 151 aa10.53□□□□□ -0.72
CLN3-264ENST00000637985 MED9Q9NWA0 146 aa10.53□□□□□ -0.72
CLN3-264ENST00000637985 VAX2Q9UIW0 290 aa10.53□□□□□ -0.72
CLN3-264ENST00000637985 KRTAP9-6A0A140TA67 174 aa10.52□□□□□ -0.73
CLN3-264ENST00000637985 F2Z2F3 143 aa10.52□□□□□ -0.73
CLN3-264ENST00000637985 P01737 135 aa10.52□□□□□ -0.73
CLN3-264ENST00000637985 GZMBP10144 247 aa10.52□□□□□ -0.73
CLN3-264ENST00000637985 Q6ZNX1 250 aa10.52□□□□□ -0.73
CLN3-264ENST00000637985 DNAJC30Q96LL9 226 aa10.52□□□□□ -0.73
CLN3-264ENST00000637985 TPPP3Q9BW30 176 aa10.52□□□□□ -0.73
CLN3-264ENST00000637985 TRBV20OR9-2A0A075B6H5 130 aa10.5□□□□□ -0.73
CLN3-264ENST00000637985 H7C1H1 209 aa10.5□□□□□ -0.73
CLN3-264ENST00000637985 CHCHD5Q9BSY4 110 aa10.5□□□□□ -0.73
CLN3-264ENST00000637985 CRPP02741 224 aa10.49□□□□□ -0.73
CLN3-264ENST00000637985 ODF1Q14990 250 aa10.49□□□□□ -0.73
CLN3-264ENST00000637985 MPV17L2Q567V2 206 aa10.49□□□□□ -0.73
CLN3-264ENST00000637985 NTM-AS1Q6ZSK4 140 aa10.49□□□□□ -0.73
CLN3-264ENST00000637985 C1orf43Q9BWL3 253 aa10.49□□□□□ -0.73
CLN3-264ENST00000637985 TRBV25-1A0A075B6N4 114 aa10.48□□□□□ -0.73
CLN3-264ENST00000637985 M0QY20 66 aa10.48□□□□□ -0.73
CLN3-264ENST00000637985 ANGP03950 147 aaKnown RBP10.48□□□□□ -0.73
CLN3-264ENST00000637985 MGPP08493 103 aa10.48□□□□□ -0.73
CLN3-264ENST00000637985 TRGC1P0CF51 173 aa10.48□□□□□ -0.73
CLN3-264ENST00000637985 WDR73Q6P4I2 378 aa10.48□□□□□ -0.73
CLN3-264ENST00000637985 ENHOQ6UWT2 76 aa10.48□□□□□ -0.73
CLN3-264ENST00000637985 AKAP14Q86UN6 197 aa10.48□□□□□ -0.73
CLN3-264ENST00000637985 C9orf62Q8N4C0 152 aa10.48□□□□□ -0.73
CLN3-264ENST00000637985 C15orf54Q8N8G6 183 aa10.48□□□□□ -0.73
CLN3-264ENST00000637985 SUMO4Q6EEV6 95 aa10.47□□□□□ -0.73
CLN3-264ENST00000637985 LYZL1Q6UWQ5 148 aa10.47□□□□□ -0.73
CLN3-264ENST00000637985 NUDT10Q8NFP7 164 aa10.47□□□□□ -0.73
CLN3-264ENST00000637985 NUDT11Q96G61 164 aa10.47□□□□□ -0.73
CLN3-264ENST00000637985 NTF3P20783 257 aa10.46□□□□□ -0.73
CLN3-264ENST00000637985 MIAQ16674 131 aa10.46□□□□□ -0.73
CLN3-264ENST00000637985 IQCJQ1A5X6 159 aa10.46□□□□□ -0.73
CLN3-264ENST00000637985 C14orf177Q52M58 125 aa10.46□□□□□ -0.73
CLN3-264ENST00000637985 DPH3P1Q9H4G8 78 aa10.46□□□□□ -0.73
CLN3-264ENST00000637985 LPAP08519 4548 aa10.45□□□□□ -0.74
CLN3-264ENST00000637985 IGHV1-24A0A0C4DH33 117 aa10.45□□□□□ -0.74
CLN3-264ENST00000637985 BLOC1S1P78537 153 aa10.45□□□□□ -0.74
CLN3-264ENST00000637985 RASL11AQ6T310 242 aa10.45□□□□□ -0.74
CLN3-264ENST00000637985 CTRLP40313 264 aa10.44□□□□□ -0.74
CLN3-264ENST00000637985 RBX1P62877 108 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms