RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 POLR2KP53803 58 aaKnown RBP11.06□□□□□ -0.64
CLN3-253ENST00000636977 SYNJ2BPP57105 145 aa11.06□□□□□ -0.64
CLN3-253ENST00000636977 SPINK13Q1W4C9 94 aa11.06□□□□□ -0.64
CLN3-253ENST00000636977 IGLV4-69A0A075B6H9 119 aa11.06□□□□□ -0.64
CLN3-253ENST00000636977 NHLRC4P0CG21 123 aaPredicted RBP11.05□□□□□ -0.64
CLN3-253ENST00000636977 Q8N1Y9 231 aa11.05□□□□□ -0.64
CLN3-253ENST00000636977 IGHV4OR15-8A0A075B7B6 117 aa11.05□□□□□ -0.64
CLN3-253ENST00000636977 A0A087WW49 117 aa11.05□□□□□ -0.64
CLN3-253ENST00000636977 GAGE12JA6NER3 117 aa11.05□□□□□ -0.64
CLN3-253ENST00000636977 SDHAF1A6NFY7 115 aa11.05□□□□□ -0.64
CLN3-253ENST00000636977 IGIPA6NJ69 53 aa11.05□□□□□ -0.64
CLN3-253ENST00000636977 GAGE7O76087 117 aa11.05□□□□□ -0.64
CLN3-253ENST00000636977 GAGE12FP0CL80 117 aa11.05□□□□□ -0.64
CLN3-253ENST00000636977 GAGE12GP0CL81 117 aa11.05□□□□□ -0.64
CLN3-253ENST00000636977 GAGE12IP0CL82 117 aa11.05□□□□□ -0.64
CLN3-253ENST00000636977 SMCPP49901 116 aaPredicted RBP11.05□□□□□ -0.64
CLN3-253ENST00000636977 GAGE4Q13068 117 aa11.05□□□□□ -0.64
CLN3-253ENST00000636977 OPRPNQ99935 248 aaPredicted RBP11.05□□□□□ -0.64
CLN3-253ENST00000636977 ZNF256Q9Y2P7 627 aaPredicted RBP11.05□□□□□ -0.64
CLN3-253ENST00000636977 IGHV3-16A0A0C4DH30 117 aa11.04□□□□□ -0.64
CLN3-253ENST00000636977 ZNF815PA8K554 130 aa11.04□□□□□ -0.64
CLN3-253ENST00000636977 RRN3P1Q2M238 152 aa11.04□□□□□ -0.64
CLN3-253ENST00000636977 MORN3Q6PF18 240 aaPredicted RBP11.04□□□□□ -0.64
CLN3-253ENST00000636977 HIST2H2BDQ6DRA6 164 aa11.04□□□□□ -0.64
CLN3-253ENST00000636977 A0A0J9YX75 114 aa11.04□□□□□ -0.64
CLN3-253ENST00000636977 TAL2Q16559 108 aa11.04□□□□□ -0.64
CLN3-253ENST00000636977 PPDPFQ9H3Y8 114 aa11.04□□□□□ -0.64
CLN3-253ENST00000636977 PRM2P04554 102 aa11.03□□□□□ -0.64
CLN3-253ENST00000636977 M0QXV9 152 aa11.03□□□□□ -0.64
CLN3-253ENST00000636977 COX6B1P14854 86 aa11.03□□□□□ -0.64
CLN3-253ENST00000636977 TTC32Q5I0X7 151 aa11.02□□□□□ -0.64
CLN3-253ENST00000636977 LRRK2Q5S007 2527 aa11.02□□□□□ -0.65
CLN3-253ENST00000636977 TSPEAR-AS2P59090 65 aa11.02□□□□□ -0.65
CLN3-253ENST00000636977 ZNF56Q15929 161 aa11.02□□□□□ -0.65
CLN3-253ENST00000636977 C9orf85Q96MD7 179 aa11.02□□□□□ -0.65
CLN3-253ENST00000636977 K7EQG2 157 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 PPP1R17O96001 155 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 SCGB1D4Q6XE38 83 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 C18orf65Q6ZTR6 163 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 ZNRF2Q8NHG8 242 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 CARD19Q96LW7 228 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 PTPN13Q12923 2485 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 ABCA12Q86UK0 2595 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 TEX15Q9BXT5 2789 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 VCYO14598 125 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 HTN1P15515 57 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 GAGE2BQ13066 116 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 GAGE2EQ4V326 116 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 GAGE2DQ9UEU5 116 aa11.01□□□□□ -0.65
CLN3-253ENST00000636977 M0QY20 66 aa11□□□□□ -0.65
CLN3-253ENST00000636977 NDUFV3P56181 108 aaKnown RBP11□□□□□ -0.65
CLN3-253ENST00000636977 DEFB136Q30KP8 78 aa11□□□□□ -0.65
CLN3-253ENST00000636977 CFAP126Q5VTH2 177 aa11□□□□□ -0.65
CLN3-253ENST00000636977 ZNF580Q9UK33 172 aa11□□□□□ -0.65
CLN3-253ENST00000636977 LGALS9O00182 355 aa11□□□□□ -0.65
CLN3-253ENST00000636977 RBMY1A1P0DJD3 496 aaKnown RBP11□□□□□ -0.65
CLN3-253ENST00000636977 RBMY1CP0DJD4 496 aa11□□□□□ -0.65
CLN3-253ENST00000636977 SNRPD3P62318 126 aaKnown RBP11□□□□□ -0.65
CLN3-253ENST00000636977 RBMY1FQ15415 496 aaKnown RBP11□□□□□ -0.65
CLN3-253ENST00000636977 ZNF462Q96JM2 2506 aa11□□□□□ -0.65
CLN3-253ENST00000636977 A0A096LNT2 108 aa10.99□□□□□ -0.65
CLN3-253ENST00000636977 PRB1P04280 392 aa10.99□□□□□ -0.65
CLN3-253ENST00000636977 PMVKQ15126 192 aa10.99□□□□□ -0.65
CLN3-253ENST00000636977 HOXD3P31249 432 aaPredicted RBP10.99□□□□□ -0.65
CLN3-253ENST00000636977 TMEM170BQ5T4T1 132 aa10.99□□□□□ -0.65
CLN3-253ENST00000636977 LINC01356Q8N9X3 169 aa10.99□□□□□ -0.65
CLN3-253ENST00000636977 DLX4Q92988 240 aaPredicted RBP10.99□□□□□ -0.65
CLN3-253ENST00000636977 BEX4Q9NWD9 120 aaPredicted RBP10.99□□□□□ -0.65
CLN3-253ENST00000636977 IGHV1OR15-1A0A075B7D0 117 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 IGHV3-73A0A0B4J1V6 119 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 TRAV4A0A0B4J268 109 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 TRBV27A0A0K0K1C4 114 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 PPDPFLQ8WWR9 84 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 KNCNA6PVL3 124 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 SNCGO76070 127 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 P0DMU3 169 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 FAM231AP0DMU4 169 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 FAM231CP0DMU5 169 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 SRSF9Q13242 221 aaKnown RBP eCLIP10.98□□□□□ -0.65
CLN3-253ENST00000636977 LINC01549A6NIU2 74 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 PROK1P58294 105 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 ZNF876PQ49A33 203 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 VPREB3Q9UKI3 123 aa10.98□□□□□ -0.65
CLN3-253ENST00000636977 MYO9AB2RTY4 2548 aa10.97□□□□□ -0.65
CLN3-253ENST00000636977 HOXA3O43365 443 aaPredicted RBP10.97□□□□□ -0.65
CLN3-253ENST00000636977 MEIG1Q5JSS6 88 aa10.97□□□□□ -0.65
CLN3-253ENST00000636977 DUX3Q96PT4 197 aa10.97□□□□□ -0.65
CLN3-253ENST00000636977 TLN2Q9Y4G6 2542 aa10.97□□□□□ -0.65
CLN3-253ENST00000636977 LINC01619G3V211 115 aa10.97□□□□□ -0.65
CLN3-253ENST00000636977 CRLF1O75462 422 aa10.97□□□□□ -0.65
CLN3-253ENST00000636977 Q9UF83 564 aa10.97□□□□□ -0.65
CLN3-253ENST00000636977 ZNF469Q96JG9 3925 aaPredicted RBP10.96□□□□□ -0.65
CLN3-253ENST00000636977 IGHV3-64A0A075B6Q5 118 aa10.96□□□□□ -0.66
CLN3-253ENST00000636977 A0A0J9YY99 117 aa10.96□□□□□ -0.66
CLN3-253ENST00000636977 SLURP1P55000 103 aa10.96□□□□□ -0.66
CLN3-253ENST00000636977 ZNF702PQ9H963 129 aa10.96□□□□□ -0.66
CLN3-253ENST00000636977 TRBV6-5A0A0K0K1A5 114 aa10.95□□□□□ -0.66
CLN3-253ENST00000636977 TIMM17AQ99595 171 aa10.95□□□□□ -0.66
CLN3-253ENST00000636977 IFITM1P13164 125 aa10.95□□□□□ -0.66
CLN3-253ENST00000636977 ODF3Q96PU9 254 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms