RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 FOXI2Q6ZQN5 318 aa7.84□□□□□ -1.15
CUX1-221ENST00000622516 SCGB3A1Q96QR1 104 aa7.84□□□□□ -1.15
CUX1-221ENST00000622516 IGKCP01834 107 aa7.83□□□□□ -1.16
CUX1-221ENST00000622516 KRTAP1-1Q07627 177 aa7.83□□□□□ -1.16
CUX1-221ENST00000622516 ZNF56Q15929 161 aa7.83□□□□□ -1.16
CUX1-221ENST00000622516 RAX2Q96IS3 184 aa7.83□□□□□ -1.16
CUX1-221ENST00000622516 ZNF256Q9Y2P7 627 aaPredicted RBP7.83□□□□□ -1.16
CUX1-221ENST00000622516 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.83□□□□□ -1.16
CUX1-221ENST00000622516 MED14OSP0DP75 135 aa7.83□□□□□ -1.16
CUX1-221ENST00000622516 C2orf66Q6UXQ4 117 aa7.83□□□□□ -1.16
CUX1-221ENST00000622516 TRAV8-6A0A0B4J262 113 aa7.83□□□□□ -1.16
CUX1-221ENST00000622516 GAGE10A6NGK3 116 aa7.83□□□□□ -1.16
CUX1-221ENST00000622516 C12orf54Q6X4T0 127 aa7.83□□□□□ -1.16
CUX1-221ENST00000622516 C20orf78Q9BR46 151 aa7.83□□□□□ -1.16
CUX1-221ENST00000622516 H3BMM0 161 aa7.82□□□□□ -1.16
CUX1-221ENST00000622516 ATP5LO75964 103 aa7.82□□□□□ -1.16
CUX1-221ENST00000622516 DUSP14O95147 198 aaKnown RBP7.82□□□□□ -1.16
CUX1-221ENST00000622516 EMP1P54849 157 aa7.82□□□□□ -1.16
CUX1-221ENST00000622516 RPL39P62891 51 aaKnown RBP7.82□□□□□ -1.16
CUX1-221ENST00000622516 C9orf85Q96MD7 179 aa7.82□□□□□ -1.16
CUX1-221ENST00000622516 PEMTQ9UBM1 199 aa7.82□□□□□ -1.16
CUX1-221ENST00000622516 FLNBO75369 2602 aaKnown RBP7.82□□□□□ -1.16
CUX1-221ENST00000622516 NBEAL2Q6ZNJ1 2754 aa7.82□□□□□ -1.16
CUX1-221ENST00000622516 TRAV25A0A0B4J276 109 aa7.82□□□□□ -1.16
CUX1-221ENST00000622516 DPM2O94777 84 aa7.82□□□□□ -1.16
CUX1-221ENST00000622516 NXPH4O95158 308 aa7.82□□□□□ -1.16
CUX1-221ENST00000622516 PROK1P58294 105 aa7.82□□□□□ -1.16
CUX1-221ENST00000622516 RPL32P62910 135 aaKnown RBP7.82□□□□□ -1.16
CUX1-221ENST00000622516 DEFB114Q30KQ6 69 aa7.82□□□□□ -1.16
CUX1-221ENST00000622516 ZMAT4Q9H898 229 aa7.82□□□□□ -1.16
CUX1-221ENST00000622516 CRYGDP07320 174 aa7.81□□□□□ -1.16
CUX1-221ENST00000622516 ORMDL2Q53FV1 153 aa7.81□□□□□ -1.16
CUX1-221ENST00000622516 SMIM20Q8N5G0 67 aa7.81□□□□□ -1.16
CUX1-221ENST00000622516 SDHAF1A6NFY7 115 aa7.81□□□□□ -1.16
CUX1-221ENST00000622516 K7EMI3 77 aa7.81□□□□□ -1.16
CUX1-221ENST00000622516 GTF2H5Q6ZYL4 71 aa7.81□□□□□ -1.16
CUX1-221ENST00000622516 MAP6D1Q9H9H5 199 aa7.81□□□□□ -1.16
CUX1-221ENST00000622516 P0DMU3 169 aa7.8□□□□□ -1.16
CUX1-221ENST00000622516 FAM231AP0DMU4 169 aa7.8□□□□□ -1.16
CUX1-221ENST00000622516 FAM231CP0DMU5 169 aa7.8□□□□□ -1.16
CUX1-221ENST00000622516 TOMM6Q96B49 74 aa7.8□□□□□ -1.16
CUX1-221ENST00000622516 ODF3Q96PU9 254 aa7.8□□□□□ -1.16
CUX1-221ENST00000622516 NAA38Q9BRA0 125 aaKnown RBP7.8□□□□□ -1.16
CUX1-221ENST00000622516 Q9UF83 564 aa7.8□□□□□ -1.16
CUX1-221ENST00000622516 IGHV3OR16-12A0A075B7B8 117 aa7.8□□□□□ -1.16
CUX1-221ENST00000622516 A0A087WX48 190 aa7.8□□□□□ -1.16
CUX1-221ENST00000622516 M0QXV9 152 aa7.8□□□□□ -1.16
CUX1-221ENST00000622516 HLA-DRB4P13762 266 aa7.8□□□□□ -1.16
CUX1-221ENST00000622516 TMEM97Q5BJF2 176 aa7.8□□□□□ -1.16
CUX1-221ENST00000622516 MORN3Q6PF18 240 aaPredicted RBP7.8□□□□□ -1.16
CUX1-221ENST00000622516 HLA-DRB4X5D2U9 266 aa7.8□□□□□ -1.16
CUX1-221ENST00000622516 TP53TG1Q9Y2A0 90 aa7.8□□□□□ -1.16
CUX1-221ENST00000622516 TENM1Q9UKZ4 2725 aa7.79□□□□□ -1.16
CUX1-221ENST00000622516 CCL24O00175 119 aa7.79□□□□□ -1.16
CUX1-221ENST00000622516 ZFP2Q6ZN57 461 aa7.79□□□□□ -1.16
CUX1-221ENST00000622516 MAPKAPK5-AS1Q8N8E1 139 aa7.79□□□□□ -1.16
CUX1-221ENST00000622516 LINC01006Q8NI28 216 aa7.79□□□□□ -1.16
CUX1-221ENST00000622516 BAALCQ8WXS3 180 aa7.79□□□□□ -1.16
CUX1-221ENST00000622516 XCL2Q9UBD3 114 aa7.79□□□□□ -1.16
CUX1-221ENST00000622516 M0QY20 66 aa7.79□□□□□ -1.16
CUX1-221ENST00000622516 PF4P02776 101 aa7.79□□□□□ -1.16
CUX1-221ENST00000622516 POLR2KP53803 58 aaKnown RBP7.79□□□□□ -1.16
CUX1-221ENST00000622516 SYT8Q8NBV8 401 aa7.79□□□□□ -1.16
CUX1-221ENST00000622516 OPRPNQ99935 248 aaPredicted RBP7.79□□□□□ -1.16
CUX1-221ENST00000622516 PRSS29PA6NIE9 313 aa7.78□□□□□ -1.16
CUX1-221ENST00000622516 TMEM86BQ8N661 226 aa7.78□□□□□ -1.16
CUX1-221ENST00000622516 POM121L12Q8N7R1 296 aa7.78□□□□□ -1.16
CUX1-221ENST00000622516 LINC01587Q99440 93 aa7.78□□□□□ -1.16
CUX1-221ENST00000622516 TSHBP01222 138 aa7.78□□□□□ -1.16
CUX1-221ENST00000622516 NEXN-AS1Q8NBZ9 246 aa7.78□□□□□ -1.16
CUX1-221ENST00000622516 F8VRH5 84 aa7.77□□□□□ -1.16
CUX1-221ENST00000622516 C5orf47Q569G3 176 aa7.77□□□□□ -1.16
CUX1-221ENST00000622516 UFSP1Q6NVU6 142 aa7.77□□□□□ -1.16
CUX1-221ENST00000622516 RAB37Q96AX2 223 aa7.77□□□□□ -1.16
CUX1-221ENST00000622516 KIR2DL4Q99706 377 aa7.77□□□□□ -1.16
CUX1-221ENST00000622516 TRRAPQ9Y4A5 3859 aa7.77□□□□□ -1.17
CUX1-221ENST00000622516 H7C1H1 209 aa7.77□□□□□ -1.17
CUX1-221ENST00000622516 VCYO14598 125 aa7.77□□□□□ -1.17
CUX1-221ENST00000622516 ODF3L2Q3SX64 289 aa7.77□□□□□ -1.17
CUX1-221ENST00000622516 PPP1R17O96001 155 aa7.77□□□□□ -1.17
CUX1-221ENST00000622516 WFDC10AQ9H1F0 79 aa7.77□□□□□ -1.17
CUX1-221ENST00000622516 CYSLTR1Q9Y271 337 aa7.77□□□□□ -1.17
CUX1-221ENST00000622516 ATRQ13535 2644 aa7.76□□□□□ -1.17
CUX1-221ENST00000622516 TRGV11A0A075B6L2 103 aa7.76□□□□□ -1.17
CUX1-221ENST00000622516 TRBV25-1A0A075B6N4 114 aa7.76□□□□□ -1.17
CUX1-221ENST00000622516 GCSHP23434 173 aa7.76□□□□□ -1.17
CUX1-221ENST00000622516 NSUN5P1Q3KNT7 163 aa7.76□□□□□ -1.17
CUX1-221ENST00000622516 NSD1Q96L73 2696 aaPredicted RBP7.76□□□□□ -1.17
CUX1-221ENST00000622516 HIVEP1P15822 2718 aa7.76□□□□□ -1.17
CUX1-221ENST00000622516 Q6ZSN1 163 aa7.76□□□□□ -1.17
CUX1-221ENST00000622516 SPAG8Q99932 426 aaPredicted RBP7.76□□□□□ -1.17
CUX1-221ENST00000622516 MRPL16Q9NX20 251 aaKnown RBP7.76□□□□□ -1.17
CUX1-221ENST00000622516 WIPF1O43516 503 aa7.75□□□□□ -1.17
CUX1-221ENST00000622516 HSD52Q0P140 79 aa7.75□□□□□ -1.17
CUX1-221ENST00000622516 PLNP26678 52 aa7.75□□□□□ -1.17
CUX1-221ENST00000622516 TSSC4Q9Y5U2 329 aaPredicted RBP7.75□□□□□ -1.17
CUX1-221ENST00000622516 TRBV27A0A0K0K1C4 114 aa7.74□□□□□ -1.17
CUX1-221ENST00000622516 IGIPA6NJ69 53 aa7.74□□□□□ -1.17
CUX1-221ENST00000622516 K7EP34 96 aa7.74□□□□□ -1.17
CUX1-221ENST00000622516 GAGE5Q13069 117 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms