RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 AP1S3Q96PC3 154 aa7.82□□□□□ -1.16
UPF3B-204ENST00000619445 SCO2A0A1W2PP80 73 aa7.81□□□□□ -1.16
UPF3B-204ENST00000619445 KRTAP29-1A8MX34 341 aaPredicted RBP7.81□□□□□ -1.16
UPF3B-204ENST00000619445 F5H697 171 aa7.81□□□□□ -1.16
UPF3B-204ENST00000619445 H7C1H1 209 aa7.81□□□□□ -1.16
UPF3B-204ENST00000619445 ANGP03950 147 aaKnown RBP7.81□□□□□ -1.16
UPF3B-204ENST00000619445 TMUB2Q71RG4 321 aa7.81□□□□□ -1.16
UPF3B-204ENST00000619445 SCXQ7RTU7 201 aa7.81□□□□□ -1.16
UPF3B-204ENST00000619445 NEXN-AS1Q8NBZ9 246 aa7.81□□□□□ -1.16
UPF3B-204ENST00000619445 CHCHD5Q9BSY4 110 aa7.81□□□□□ -1.16
UPF3B-204ENST00000619445 MANBALQ9NQG1 85 aa7.81□□□□□ -1.16
UPF3B-204ENST00000619445 VAX2Q9UIW0 290 aa7.81□□□□□ -1.16
UPF3B-204ENST00000619445 BCL2L11O43521 198 aa7.8□□□□□ -1.16
UPF3B-204ENST00000619445 RAB5CP51148 216 aa7.8□□□□□ -1.16
UPF3B-204ENST00000619445 RPS20P60866 119 aaKnown RBP7.8□□□□□ -1.16
UPF3B-204ENST00000619445 EIF5AL1Q6IS14 154 aaKnown RBP7.8□□□□□ -1.16
UPF3B-204ENST00000619445 C15orf54Q8N8G6 183 aa7.8□□□□□ -1.16
UPF3B-204ENST00000619445 SMIM12Q96EX1 92 aa7.8□□□□□ -1.16
UPF3B-204ENST00000619445 TRBV25-1A0A075B6N4 114 aa7.79□□□□□ -1.16
UPF3B-204ENST00000619445 XKRY2A2RUG3 117 aa7.79□□□□□ -1.16
UPF3B-204ENST00000619445 IGLV2-8P01709 118 aa7.79□□□□□ -1.16
UPF3B-204ENST00000619445 RPL19P84098 196 aaKnown RBP7.79□□□□□ -1.16
UPF3B-204ENST00000619445 MPV17L2Q567V2 206 aa7.79□□□□□ -1.16
UPF3B-204ENST00000619445 DGAT2L7PQ6IED9 249 aa7.79□□□□□ -1.16
UPF3B-204ENST00000619445 DAZAP1Q96EP5 407 aaKnown RBP7.79□□□□□ -1.16
UPF3B-204ENST00000619445 DNAJC30Q96LL9 226 aa7.79□□□□□ -1.16
UPF3B-204ENST00000619445 BIN3Q9NQY0 253 aa7.79□□□□□ -1.16
UPF3B-204ENST00000619445 RPL35P42766 123 aaKnown RBP7.78□□□□□ -1.16
UPF3B-204ENST00000619445 CACNG7P62955 275 aa7.78□□□□□ -1.16
UPF3B-204ENST00000619445 ENHOQ6UWT2 76 aa7.78□□□□□ -1.16
UPF3B-204ENST00000619445 C11orf52Q96A22 123 aa7.78□□□□□ -1.16
UPF3B-204ENST00000619445 TRAV1-1A0A0B4J248 108 aa7.77□□□□□ -1.17
UPF3B-204ENST00000619445 A0A1B0GV50 99 aa7.77□□□□□ -1.17
UPF3B-204ENST00000619445 F2Z2F3 143 aa7.77□□□□□ -1.17
UPF3B-204ENST00000619445 DERL1Q9BUN8 251 aa7.77□□□□□ -1.17
UPF3B-204ENST00000619445 PRR34Q9NV39 138 aa7.77□□□□□ -1.17
UPF3B-204ENST00000619445 IGHV1-24A0A0C4DH33 117 aa7.76□□□□□ -1.17
UPF3B-204ENST00000619445 USP17L23D6RBM5 183 aa7.76□□□□□ -1.17
UPF3B-204ENST00000619445 SMLR1H3BR10 107 aa7.76□□□□□ -1.17
UPF3B-204ENST00000619445 IQCJQ1A5X6 159 aa7.76□□□□□ -1.17
UPF3B-204ENST00000619445 LINC01620Q4KN68 170 aa7.76□□□□□ -1.17
UPF3B-204ENST00000619445 FER1L6-AS1Q8NA97 138 aa7.76□□□□□ -1.17
UPF3B-204ENST00000619445 CLRN3Q8NCR9 226 aa7.76□□□□□ -1.17
UPF3B-204ENST00000619445 CIRBP-AS1Q8TBR5 109 aa7.76□□□□□ -1.17
UPF3B-204ENST00000619445 KIF25-AS1Q9Y6Z4 181 aa7.76□□□□□ -1.17
UPF3B-204ENST00000619445 TRAV8-4A0A0B4J246 113 aa7.75□□□□□ -1.17
UPF3B-204ENST00000619445 PDE6DO43924 150 aa7.75□□□□□ -1.17
UPF3B-204ENST00000619445 OXTP01178 125 aa7.75□□□□□ -1.17
UPF3B-204ENST00000619445 IFNA1P01562 189 aa7.75□□□□□ -1.17
UPF3B-204ENST00000619445 P01737 135 aa7.75□□□□□ -1.17
UPF3B-204ENST00000619445 HLA-DQA1P01909 254 aa7.75□□□□□ -1.17
UPF3B-204ENST00000619445 TRGC1P0CF51 173 aa7.75□□□□□ -1.17
UPF3B-204ENST00000619445 RBX1P62877 108 aa7.75□□□□□ -1.17
UPF3B-204ENST00000619445 GNG13Q9P2W3 67 aa7.75□□□□□ -1.17
UPF3B-204ENST00000619445 IGLC6P0CF74 106 aa7.74□□□□□ -1.17
UPF3B-204ENST00000619445 GZMBP10144 247 aa7.74□□□□□ -1.17
UPF3B-204ENST00000619445 TAGLN2P37802 199 aaKnown RBP7.74□□□□□ -1.17
UPF3B-204ENST00000619445 GNG4P50150 75 aa7.74□□□□□ -1.17
UPF3B-204ENST00000619445 CCL20P78556 96 aa7.74□□□□□ -1.17
UPF3B-204ENST00000619445 CENPWQ5EE01 88 aa7.74□□□□□ -1.17
UPF3B-204ENST00000619445 SERTAD4-AS1Q5TG53 156 aa7.74□□□□□ -1.17
UPF3B-204ENST00000619445 NTM-AS1Q6ZSK4 140 aa7.74□□□□□ -1.17
UPF3B-204ENST00000619445 C9orf163Q8N9P6 203 aa7.74□□□□□ -1.17
UPF3B-204ENST00000619445 OR2D3Q8NGH3 330 aa7.74□□□□□ -1.17
UPF3B-204ENST00000619445 TPPP3Q9BW30 176 aa7.74□□□□□ -1.17
UPF3B-204ENST00000619445 MUC21A0A0G2JKD1 596 aa7.73□□□□□ -1.17
UPF3B-204ENST00000619445 MUC21A0A140T8X8 626 aa7.73□□□□□ -1.17
UPF3B-204ENST00000619445 A0A1B0GUV1 79 aa7.73□□□□□ -1.17
UPF3B-204ENST00000619445 M0QY20 66 aa7.73□□□□□ -1.17
UPF3B-204ENST00000619445 MEF2BQ02080 365 aaPredicted RBP7.73□□□□□ -1.17
UPF3B-204ENST00000619445 WDR73Q6P4I2 378 aa7.73□□□□□ -1.17
UPF3B-204ENST00000619445 LINC00269Q8N2A0 174 aa7.73□□□□□ -1.17
UPF3B-204ENST00000619445 C19orf71A6NCJ1 209 aa7.72□□□□□ -1.17
UPF3B-204ENST00000619445 MGPP08493 103 aa7.72□□□□□ -1.17
UPF3B-204ENST00000619445 SSTP61278 116 aa7.72□□□□□ -1.17
UPF3B-204ENST00000619445 GAGE6Q13070 117 aa7.72□□□□□ -1.17
UPF3B-204ENST00000619445 RASL11AQ6T310 242 aa7.72□□□□□ -1.17
UPF3B-204ENST00000619445 PGLYRP4Q96LB8 373 aa7.72□□□□□ -1.17
UPF3B-204ENST00000619445 TMEM243Q9BU79 118 aa7.72□□□□□ -1.17
UPF3B-204ENST00000619445 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.71□□□□□ -1.17
UPF3B-204ENST00000619445 PRSS1P07477 247 aa7.71□□□□□ -1.17
UPF3B-204ENST00000619445 REG3AQ06141 175 aa7.71□□□□□ -1.17
UPF3B-204ENST00000619445 DPH3P1Q9H4G8 78 aa7.71□□□□□ -1.17
UPF3B-204ENST00000619445 NIT2Q9NQR4 276 aa7.71□□□□□ -1.17
UPF3B-204ENST00000619445 UBE2L6O14933 153 aa7.71□□□□□ -1.18
UPF3B-204ENST00000619445 SULT1A2P50226 295 aa7.71□□□□□ -1.18
UPF3B-204ENST00000619445 KRTAP10-4P60372 401 aaPredicted RBP7.71□□□□□ -1.18
UPF3B-204ENST00000619445 RPL37AP61513 92 aaKnown RBP7.71□□□□□ -1.18
UPF3B-204ENST00000619445 CNBPP62633 177 aaKnown RBP7.71□□□□□ -1.18
UPF3B-204ENST00000619445 SUMO4Q6EEV6 95 aa7.71□□□□□ -1.18
UPF3B-204ENST00000619445 C9orf62Q8N4C0 152 aa7.71□□□□□ -1.18
UPF3B-204ENST00000619445 AP5S1Q9NUS5 200 aa7.71□□□□□ -1.18
UPF3B-204ENST00000619445 COTL1Q14019 142 aa7.7□□□□□ -1.18
UPF3B-204ENST00000619445 KRTAP26-1Q6PEX3 210 aa7.7□□□□□ -1.18
UPF3B-204ENST00000619445 MED9Q9NWA0 146 aa7.7□□□□□ -1.18
UPF3B-204ENST00000619445 BCL2P10415 239 aa7.69□□□□□ -1.18
UPF3B-204ENST00000619445 NKX2-5P52952 324 aaPredicted RBP7.69□□□□□ -1.18
UPF3B-204ENST00000619445 CFAP161Q6P656 301 aa7.69□□□□□ -1.18
UPF3B-204ENST00000619445 CLPSL2Q6UWE3 100 aa7.69□□□□□ -1.18
UPF3B-204ENST00000619445 TEX261Q6UWH6 196 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms