RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 GPHB5Q86YW7 130 aa10.73□□□□□ -0.69
CPSF1-212ENST00000616140 E9PLD3 99 aa10.72□□□□□ -0.69
CPSF1-212ENST00000616140 ANKRD29Q8N6D5 301 aa10.72□□□□□ -0.69
CPSF1-212ENST00000616140 BAALC-AS2P0C853 105 aa10.72□□□□□ -0.69
CPSF1-212ENST00000616140 DEFB113Q30KQ7 82 aa10.72□□□□□ -0.69
CPSF1-212ENST00000616140 DAND5Q8N907 189 aa10.72□□□□□ -0.69
CPSF1-212ENST00000616140 MDFICQ9P1T7 246 aa10.72□□□□□ -0.69
CPSF1-212ENST00000616140 PRRC2CQ9Y520 2896 aaKnown RBP10.71□□□□□ -0.69
CPSF1-212ENST00000616140 MBD6Q96DN6 1003 aa10.71□□□□□ -0.69
CPSF1-212ENST00000616140 TIMM17AQ99595 171 aa10.71□□□□□ -0.69
CPSF1-212ENST00000616140 SPATA12Q7Z6I5 190 aa10.71□□□□□ -0.69
CPSF1-212ENST00000616140 RNF152Q8N8N0 203 aa10.71□□□□□ -0.69
CPSF1-212ENST00000616140 TMEM61Q8N0U2 210 aa10.71□□□□□ -0.7
CPSF1-212ENST00000616140 TOMM6Q96B49 74 aa10.71□□□□□ -0.7
CPSF1-212ENST00000616140 CCDC140Q96MF4 163 aa10.7□□□□□ -0.7
CPSF1-212ENST00000616140 TMEM126AQ9H061 195 aa10.7□□□□□ -0.7
CPSF1-212ENST00000616140 TRAV4A0A0B4J268 109 aa10.7□□□□□ -0.7
CPSF1-212ENST00000616140 DAZAP2Q15038 168 aaPredicted RBP10.7□□□□□ -0.7
CPSF1-212ENST00000616140 IGLV10-54A0A075B6I4 117 aa10.7□□□□□ -0.7
CPSF1-212ENST00000616140 LMO4P61968 165 aa10.7□□□□□ -0.7
CPSF1-212ENST00000616140 HERV-K104P63124 156 aa10.7□□□□□ -0.7
CPSF1-212ENST00000616140 TEN1Q86WV5 123 aa10.7□□□□□ -0.7
CPSF1-212ENST00000616140 SND1-IT1Q9HBX3 110 aa10.7□□□□□ -0.7
CPSF1-212ENST00000616140 IGHG4P01861 327 aa10.69□□□□□ -0.7
CPSF1-212ENST00000616140 GYPEP15421 78 aa10.69□□□□□ -0.7
CPSF1-212ENST00000616140 YPEL4Q96NS1 127 aa10.69□□□□□ -0.7
CPSF1-212ENST00000616140 DSCR8Q96T75 97 aa10.69□□□□□ -0.7
CPSF1-212ENST00000616140 TP73-AS1Q9UF72 201 aa10.69□□□□□ -0.7
CPSF1-212ENST00000616140 MED14OSP0DP75 135 aa10.68□□□□□ -0.7
CPSF1-212ENST00000616140 LINC01620Q4KN68 170 aa10.68□□□□□ -0.7
CPSF1-212ENST00000616140 OPRPNQ99935 248 aaPredicted RBP10.68□□□□□ -0.7
CPSF1-212ENST00000616140 ESM1Q9NQ30 184 aa10.68□□□□□ -0.7
CPSF1-212ENST00000616140 A0A0J9YX75 114 aa10.68□□□□□ -0.7
CPSF1-212ENST00000616140 ATP6V0E2Q8NHE4 81 aa10.68□□□□□ -0.7
CPSF1-212ENST00000616140 RPL32P62910 135 aaKnown RBP10.68□□□□□ -0.7
CPSF1-212ENST00000616140 COL4A4P53420 1690 aaPredicted RBP10.68□□□□□ -0.7
CPSF1-212ENST00000616140 TRBV7-3A0A075B6L6 115 aa10.68□□□□□ -0.7
CPSF1-212ENST00000616140 K7EQD1 137 aa10.68□□□□□ -0.7
CPSF1-212ENST00000616140 HIST2H2BCQ6DN03 193 aa10.68□□□□□ -0.7
CPSF1-212ENST00000616140 C20orf203Q8NBC4 194 aa10.67□□□□□ -0.7
CPSF1-212ENST00000616140 DAZ2Q13117 558 aaKnown RBP10.67□□□□□ -0.7
CPSF1-212ENST00000616140 DAZ4Q86SG3 579 aaKnown RBP10.67□□□□□ -0.7
CPSF1-212ENST00000616140 PIFOQ8TCI5 191 aa10.67□□□□□ -0.7
CPSF1-212ENST00000616140 DAZ3Q9NR90 486 aaKnown RBP10.67□□□□□ -0.7
CPSF1-212ENST00000616140 ODF3BA8MYP8 253 aa10.67□□□□□ -0.7
CPSF1-212ENST00000616140 CDK2AP2O75956 126 aa10.67□□□□□ -0.7
CPSF1-212ENST00000616140 TP53TG3Q9ULZ0 132 aa10.67□□□□□ -0.7
CPSF1-212ENST00000616140 IGLC6P0CF74 106 aa10.66□□□□□ -0.7
CPSF1-212ENST00000616140 ICOSQ9Y6W8 199 aa10.66□□□□□ -0.7
CPSF1-212ENST00000616140 PRRC2AP48634 2157 aaKnown RBP10.66□□□□□ -0.7
CPSF1-212ENST00000616140 B5MCH6 92 aa10.66□□□□□ -0.7
CPSF1-212ENST00000616140 C16orf74Q96GX8 76 aa10.66□□□□□ -0.7
CPSF1-212ENST00000616140 IGKV2D-24A0A075B6R9 120 aa10.65□□□□□ -0.7
CPSF1-212ENST00000616140 A6NDX4 124 aa10.65□□□□□ -0.7
CPSF1-212ENST00000616140 CEMP1Q6PRD7 247 aaPredicted RBP10.64□□□□□ -0.71
CPSF1-212ENST00000616140 VSIG2Q96IQ7 327 aa10.64□□□□□ -0.71
CPSF1-212ENST00000616140 Q9HAA7 133 aa10.64□□□□□ -0.71
CPSF1-212ENST00000616140 ORMDL1Q9P0S3 153 aa10.64□□□□□ -0.71
CPSF1-212ENST00000616140 PTH2Q96A98 100 aa10.64□□□□□ -0.71
CPSF1-212ENST00000616140 IGF1P05019 195 aa10.63□□□□□ -0.71
CPSF1-212ENST00000616140 IGHV3-30-3P0DP02 117 aa10.63□□□□□ -0.71
CPSF1-212ENST00000616140 CRIP1P50238 77 aa10.63□□□□□ -0.71
CPSF1-212ENST00000616140 CRYGBP07316 175 aa10.62□□□□□ -0.71
CPSF1-212ENST00000616140 H0YGX0 51 aa10.62□□□□□ -0.71
CPSF1-212ENST00000616140 ATP5G1P05496 136 aa10.62□□□□□ -0.71
CPSF1-212ENST00000616140 FOXI1Q12951 378 aa10.62□□□□□ -0.71
CPSF1-212ENST00000616140 TMEM89A2RUT3 159 aa10.62□□□□□ -0.71
CPSF1-212ENST00000616140 COX7A2LO14548 114 aa10.62□□□□□ -0.71
CPSF1-212ENST00000616140 RBMY1FQ15415 496 aaKnown RBP10.62□□□□□ -0.71
CPSF1-212ENST00000616140 COX7B2Q8TF08 81 aa10.62□□□□□ -0.71
CPSF1-212ENST00000616140 C1orf43Q9BWL3 253 aa10.62□□□□□ -0.71
CPSF1-212ENST00000616140 MRPL23Q16540 153 aaKnown RBP10.61□□□□□ -0.71
CPSF1-212ENST00000616140 SPANXDQ9BXN6 97 aa10.61□□□□□ -0.71
CPSF1-212ENST00000616140 IGHV4-4A0A075B6R2 117 aa10.61□□□□□ -0.71
CPSF1-212ENST00000616140 PCNTO95613 3336 aa10.61□□□□□ -0.71
CPSF1-212ENST00000616140 IGHV1-58A0A0C4DH39 117 aa10.6□□□□□ -0.71
CPSF1-212ENST00000616140 TNFRSF13BO14836 293 aaPredicted RBP10.6□□□□□ -0.71
CPSF1-212ENST00000616140 SPART-AS1P0CW21 52 aa10.6□□□□□ -0.71
CPSF1-212ENST00000616140 P0DMU3 169 aa10.6□□□□□ -0.71
CPSF1-212ENST00000616140 FAM231AP0DMU4 169 aa10.6□□□□□ -0.71
CPSF1-212ENST00000616140 FAM231CP0DMU5 169 aa10.6□□□□□ -0.71
CPSF1-212ENST00000616140 MYCNOSP40205 109 aa10.6□□□□□ -0.71
CPSF1-212ENST00000616140 CLEC2BQ92478 149 aa10.6□□□□□ -0.71
CPSF1-212ENST00000616140 CAMK2N2Q96S95 79 aa10.6□□□□□ -0.71
CPSF1-212ENST00000616140 HHLA3Q9XRX5 114 aa10.6□□□□□ -0.71
CPSF1-212ENST00000616140 ACYP1P07311 99 aa10.59□□□□□ -0.71
CPSF1-212ENST00000616140 C19orf84I3L1E1 186 aa10.59□□□□□ -0.71
CPSF1-212ENST00000616140 CITED2Q99967 270 aaPredicted RBP10.59□□□□□ -0.71
CPSF1-212ENST00000616140 C10orf142B7Z368 130 aa10.59□□□□□ -0.71
CPSF1-212ENST00000616140 DEFB4AO15263 64 aa10.59□□□□□ -0.71
CPSF1-212ENST00000616140 Q6ZUT4 128 aa10.59□□□□□ -0.71
CPSF1-212ENST00000616140 RMI2Q96E14 147 aa10.59□□□□□ -0.71
CPSF1-212ENST00000616140 C9orf66Q5T8R8 295 aa10.58□□□□□ -0.72
CPSF1-212ENST00000616140 NDUFA11Q86Y39 141 aa10.58□□□□□ -0.72
CPSF1-212ENST00000616140 MIR7-3HGQ8N6C7 128 aa10.58□□□□□ -0.72
CPSF1-212ENST00000616140 PRO3102Q9H379 93 aa10.58□□□□□ -0.72
CPSF1-212ENST00000616140 ZFAND3Q9H8U3 227 aa10.58□□□□□ -0.72
CPSF1-212ENST00000616140 LY6LH3BQJ8 138 aa10.58□□□□□ -0.72
CPSF1-212ENST00000616140 TRACP01848 142 aa10.58□□□□□ -0.72
CPSF1-212ENST00000616140 DEFB105AQ8NG35 78 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms