RNA–Protein interactions for RNA: ENST00000611614.4

COPS7B-223, Transcript of COP9 signalosome subunit 7B, human

TSL 3 BASIC

Gene COPS7B, Length 2,468 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS7B-223	ENST00000611614	SPRY2	O43597	315 aa		10.33	□□□□□ -0.76
COPS7B-223	ENST00000611614	CITED2	Q99967	270 aa	Predicted RBP	10.33	□□□□□ -0.76
COPS7B-223	ENST00000611614	RNASE3	P12724	160 aa	Known RBP	10.33	□□□□□ -0.76
COPS7B-223	ENST00000611614	DUX3	Q96PT4	197 aa		10.33	□□□□□ -0.76
COPS7B-223	ENST00000611614	SCGB3A1	Q96QR1	104 aa		10.33	□□□□□ -0.76
COPS7B-223	ENST00000611614	NF1	P21359	2839 aa		10.33	□□□□□ -0.76
COPS7B-223	ENST00000611614	PPP1R17	O96001	155 aa		10.32	□□□□□ -0.76
COPS7B-223	ENST00000611614	C14orf178	Q8N769	122 aa	Predicted RBP	10.32	□□□□□ -0.76
COPS7B-223	ENST00000611614	RASL10A	Q92737	203 aa		10.32	□□□□□ -0.76
COPS7B-223	ENST00000611614	NSD1	Q96L73	2696 aa	Predicted RBP	10.32	□□□□□ -0.76
COPS7B-223	ENST00000611614	SUMO2	P61956	95 aa	Known RBP	10.32	□□□□□ -0.76
COPS7B-223	ENST00000611614	WFDC2	Q14508	124 aa		10.32	□□□□□ -0.76
COPS7B-223	ENST00000611614	GAGE13	Q4V321	117 aa		10.32	□□□□□ -0.76
COPS7B-223	ENST00000611614	NEXN-AS1	Q8NBZ9	246 aa		10.32	□□□□□ -0.76
COPS7B-223	ENST00000611614	SPATA25	Q9BR10	227 aa		10.32	□□□□□ -0.76
COPS7B-223	ENST00000611614	FN1	P02751	2386 aa	Known RBP	10.32	□□□□□ -0.76
COPS7B-223	ENST00000611614	ANK3	Q12955	4377 aa	Known RBP	10.32	□□□□□ -0.76
COPS7B-223	ENST00000611614	PROK1	P58294	105 aa		10.31	□□□□□ -0.76
COPS7B-223	ENST00000611614	F8	P00451	2351 aa		10.31	□□□□□ -0.76
COPS7B-223	ENST00000611614	SETD2	Q9BYW2	2564 aa	Predicted RBP	10.31	□□□□□ -0.76
COPS7B-223	ENST00000611614	GAGE12H	A6NDE8	117 aa		10.31	□□□□□ -0.76
COPS7B-223	ENST00000611614	LINC01549	A6NIU2	74 aa		10.31	□□□□□ -0.76
COPS7B-223	ENST00000611614	CCL24	O00175	119 aa		10.31	□□□□□ -0.76
COPS7B-223	ENST00000611614	NXPH4	O95158	308 aa		10.31	□□□□□ -0.76
COPS7B-223	ENST00000611614	MGP	P08493	103 aa		10.3	□□□□□ -0.76
COPS7B-223	ENST00000611614	AZU1	P20160	251 aa		10.3	□□□□□ -0.76
COPS7B-223	ENST00000611614	HIST2H2BD	Q6DRA6	164 aa		10.3	□□□□□ -0.76
COPS7B-223	ENST00000611614	FAM159A	Q6UWV7	190 aa		10.3	□□□□□ -0.76
COPS7B-223	ENST00000611614	POM121L12	Q8N7R1	296 aa		10.3	□□□□□ -0.76
COPS7B-223	ENST00000611614	DLX4	Q92988	240 aa	Predicted RBP	10.3	□□□□□ -0.76
COPS7B-223	ENST00000611614	RAX2	Q96IS3	184 aa		10.3	□□□□□ -0.76
COPS7B-223	ENST00000611614		H3BMG7	143 aa		10.29	□□□□□ -0.76
COPS7B-223	ENST00000611614	RPL39L	Q96EH5	51 aa	Known RBP	10.29	□□□□□ -0.76
COPS7B-223	ENST00000611614	ODF3	Q96PU9	254 aa		10.29	□□□□□ -0.76
COPS7B-223	ENST00000611614	PRO0461	Q9UI25	63 aa		10.29	□□□□□ -0.76
COPS7B-223	ENST00000611614	SNRPD3	P62318	126 aa	Known RBP	10.29	□□□□□ -0.76
COPS7B-223	ENST00000611614	DYNLRB2	Q8TF09	96 aa		10.29	□□□□□ -0.76
COPS7B-223	ENST00000611614		K7EQG2	157 aa		10.28	□□□□□ -0.76
COPS7B-223	ENST00000611614	ZNF688	P0C7X2	276 aa		10.28	□□□□□ -0.76
COPS7B-223	ENST00000611614	ATP6V0E2	Q8NHE4	81 aa		10.28	□□□□□ -0.76
COPS7B-223	ENST00000611614		A0A0J9YX75	114 aa		10.28	□□□□□ -0.76
COPS7B-223	ENST00000611614	RPL32	P62910	135 aa	Known RBP	10.28	□□□□□ -0.76
COPS7B-223	ENST00000611614	PAPPA-AS1	Q5QFB9	102 aa		10.28	□□□□□ -0.76
COPS7B-223	ENST00000611614	GTSF1L	Q9H1H1	148 aa		10.28	□□□□□ -0.76
COPS7B-223	ENST00000611614	KIF25-AS1	Q9Y6Z4	181 aa		10.28	□□□□□ -0.76
COPS7B-223	ENST00000611614	AGRN	O00468	2067 aa		10.27	□□□□□ -0.76
COPS7B-223	ENST00000611614	TRAV12-3	A0A0B4J271	114 aa		10.27	□□□□□ -0.77
COPS7B-223	ENST00000611614	NSUN5P1	Q3KNT7	163 aa		10.27	□□□□□ -0.77
COPS7B-223	ENST00000611614	LYRM7	Q5U5X0	104 aa		10.27	□□□□□ -0.77
COPS7B-223	ENST00000611614	C2orf66	Q6UXQ4	117 aa		10.27	□□□□□ -0.77
COPS7B-223	ENST00000611614	BAALC	Q8WXS3	180 aa		10.27	□□□□□ -0.77
COPS7B-223	ENST00000611614	SPAG8	Q99932	426 aa	Predicted RBP	10.27	□□□□□ -0.77
COPS7B-223	ENST00000611614	FHL3	Q13643	280 aa		10.27	□□□□□ -0.77
COPS7B-223	ENST00000611614	CUBN	O60494	3623 aa		10.27	□□□□□ -0.77
COPS7B-223	ENST00000611614	CD7	P09564	240 aa		10.26	□□□□□ -0.77
COPS7B-223	ENST00000611614	LINC00315	P59091	139 aa		10.26	□□□□□ -0.77
COPS7B-223	ENST00000611614	ETDB	Q3ZM63	59 aa		10.26	□□□□□ -0.77
COPS7B-223	ENST00000611614	MORN3	Q6PF18	240 aa	Predicted RBP	10.26	□□□□□ -0.77
COPS7B-223	ENST00000611614	CITED1	Q99966	193 aa		10.26	□□□□□ -0.77
COPS7B-223	ENST00000611614	PRADC1	Q9BSG0	188 aa		10.26	□□□□□ -0.77
COPS7B-223	ENST00000611614	PRSS29P	A6NIE9	313 aa		10.25	□□□□□ -0.77
COPS7B-223	ENST00000611614	HERVK_113	P61574	105 aa		10.25	□□□□□ -0.77
COPS7B-223	ENST00000611614	SH2D6	Q7Z4S9	175 aa		10.25	□□□□□ -0.77
COPS7B-223	ENST00000611614	NDUFA11	Q86Y39	141 aa		10.25	□□□□□ -0.77
COPS7B-223	ENST00000611614	CYSLTR1	Q9Y271	337 aa		10.25	□□□□□ -0.77
COPS7B-223	ENST00000611614	C2CD3	Q4AC94	2353 aa		10.25	□□□□□ -0.77
COPS7B-223	ENST00000611614	ZNF815P	A8K554	130 aa		10.25	□□□□□ -0.77
COPS7B-223	ENST00000611614	SETX	Q7Z333	2677 aa	Known RBP	10.24	□□□□□ -0.77
COPS7B-223	ENST00000611614		A0A1B0GV72	72 aa		10.24	□□□□□ -0.77
COPS7B-223	ENST00000611614	UBE2D1	P51668	147 aa		10.24	□□□□□ -0.77
COPS7B-223	ENST00000611614	SMAGP	Q0VAQ4	97 aa		10.24	□□□□□ -0.77
COPS7B-223	ENST00000611614	AMTN	Q6UX39	209 aa		10.24	□□□□□ -0.77
COPS7B-223	ENST00000611614	PGPEP1	Q9NXJ5	209 aa		10.24	□□□□□ -0.77
COPS7B-223	ENST00000611614	MUC4	Q99102	2169 aa		10.24	□□□□□ -0.77
COPS7B-223	ENST00000611614	IGHV3-16	A0A0C4DH30	117 aa		10.24	□□□□□ -0.77
COPS7B-223	ENST00000611614	DUSP14	O95147	198 aa	Known RBP	10.24	□□□□□ -0.77
COPS7B-223	ENST00000611614	IGKV3-20	P01619	116 aa		10.24	□□□□□ -0.77
COPS7B-223	ENST00000611614	MRPL16	Q9NX20	251 aa	Known RBP	10.24	□□□□□ -0.77
COPS7B-223	ENST00000611614	C9orf85	Q96MD7	179 aa		10.23	□□□□□ -0.77
COPS7B-223	ENST00000611614	C1QTNF4	Q9BXJ3	329 aa		10.23	□□□□□ -0.77
COPS7B-223	ENST00000611614	JPT2	Q9H910	190 aa		10.23	□□□□□ -0.77
COPS7B-223	ENST00000611614	TRAV12-2	A0A075B6T6	113 aa		10.23	□□□□□ -0.77
COPS7B-223	ENST00000611614	APOM	O95445	188 aa		10.23	□□□□□ -0.77
COPS7B-223	ENST00000611614	SCGB1D4	Q6XE38	83 aa		10.23	□□□□□ -0.77
COPS7B-223	ENST00000611614	PF4	P02776	101 aa		10.22	□□□□□ -0.77
COPS7B-223	ENST00000611614	CFAP126	Q5VTH2	177 aa		10.22	□□□□□ -0.77
COPS7B-223	ENST00000611614	SUMO4	Q6EEV6	95 aa		10.22	□□□□□ -0.77
COPS7B-223	ENST00000611614	KIRREL3-AS3	Q8N7Y1	241 aa	Predicted RBP	10.22	□□□□□ -0.77
COPS7B-223	ENST00000611614	TMEM141	Q96I45	108 aa		10.22	□□□□□ -0.77
COPS7B-223	ENST00000611614	SRSF9	Q13242	221 aa	Known RBP eCLIP	10.22	□□□□□ -0.77
COPS7B-223	ENST00000611614	DEFB114	Q30KQ6	69 aa		10.22	□□□□□ -0.77
COPS7B-223	ENST00000611614	TMEM61	Q8N0U2	210 aa		10.22	□□□□□ -0.77
COPS7B-223	ENST00000611614	IGHV1OR15-1	A0A075B7D0	117 aa		10.21	□□□□□ -0.77
COPS7B-223	ENST00000611614		A0A087WWL8	130 aa		10.21	□□□□□ -0.77
COPS7B-223	ENST00000611614	SYT8	Q8NBV8	401 aa		10.21	□□□□□ -0.77
COPS7B-223	ENST00000611614	VCX2	Q9H322	139 aa		10.21	□□□□□ -0.77
COPS7B-223	ENST00000611614	MDFIC	Q9P1T7	246 aa		10.21	□□□□□ -0.77
COPS7B-223	ENST00000611614	JMJD1C	Q15652	2540 aa		10.21	□□□□□ -0.78
COPS7B-223	ENST00000611614	TRAV2	A0A0B4J234	112 aa		10.21	□□□□□ -0.78
COPS7B-223	ENST00000611614		F5H697	171 aa		10.21	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms