RNA–Protein interactions for RNA: ENST00000606499.1

MSH6-211, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 833 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-211ENST00000606499 GAGE12JA6NER3 117 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 H3BNG1 76 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 C3orf84H3BNL1 204 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 M0QY20 66 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 GAGE1Q13065 139 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 GAGE4Q13068 117 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 GAGE5Q13069 117 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 MRPL51Q4U2R6 128 aaKnown RBP5.34□□□□□ -1.55
MSH6-211ENST00000606499 GAGE13Q4V321 117 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 FAM104BQ5XKR9 115 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 RPL39LQ96EH5 51 aaKnown RBP5.34□□□□□ -1.55
MSH6-211ENST00000606499 PRADC1Q9BSG0 188 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 APLNQ9ULZ1 77 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 ICOSQ9Y6W8 199 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 VPS13DQ5THJ4 4388 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 ALMS1Q8TCU4 4167 aa5.34□□□□□ -1.55
MSH6-211ENST00000606499 H7C1H1 209 aa5.33□□□□□ -1.56
MSH6-211ENST00000606499 LINC00694P0DN24 101 aa5.33□□□□□ -1.56
MSH6-211ENST00000606499 RPS10P46783 165 aaKnown RBP5.33□□□□□ -1.56
MSH6-211ENST00000606499 RASL11AQ6T310 242 aa5.33□□□□□ -1.56
MSH6-211ENST00000606499 C15orf53Q8NAA6 179 aa5.33□□□□□ -1.56
MSH6-211ENST00000606499 NEXN-AS1Q8NBZ9 246 aa5.33□□□□□ -1.56
MSH6-211ENST00000606499 ZNRF2Q8NHG8 242 aa5.33□□□□□ -1.56
MSH6-211ENST00000606499 MRAP2Q96G30 205 aa5.33□□□□□ -1.56
MSH6-211ENST00000606499 TRBV10-1A0A0K0K1A3 114 aa5.32□□□□□ -1.56
MSH6-211ENST00000606499 D6R8Y8 96 aa5.32□□□□□ -1.56
MSH6-211ENST00000606499 SRIP30626 198 aa5.32□□□□□ -1.56
MSH6-211ENST00000606499 CKS2P33552 79 aa5.32□□□□□ -1.56
MSH6-211ENST00000606499 UBE2D3P61077 147 aa5.32□□□□□ -1.56
MSH6-211ENST00000606499 UBE2D2P62837 147 aa5.32□□□□□ -1.56
MSH6-211ENST00000606499 RPL36AP83881 106 aaKnown RBP5.32□□□□□ -1.56
MSH6-211ENST00000606499 MRPL23Q16540 153 aaKnown RBP5.32□□□□□ -1.56
MSH6-211ENST00000606499 LINC00528Q8N1L1 170 aa5.32□□□□□ -1.56
MSH6-211ENST00000606499 NRACQ8N912 160 aa5.32□□□□□ -1.56
MSH6-211ENST00000606499 RPL36ALQ969Q0 106 aaKnown RBP5.32□□□□□ -1.56
MSH6-211ENST00000606499 GNB1LQ9BYB4 327 aa5.32□□□□□ -1.56
MSH6-211ENST00000606499 NIT2Q9NQR4 276 aa5.32□□□□□ -1.56
MSH6-211ENST00000606499 TRBV7-3A0A075B6L6 115 aa5.31□□□□□ -1.56
MSH6-211ENST00000606499 IGHV3-38A0A0C4DH36 116 aa5.31□□□□□ -1.56
MSH6-211ENST00000606499 NPYP01303 97 aa5.31□□□□□ -1.56
MSH6-211ENST00000606499 HLA-DQA1P01909 254 aa5.31□□□□□ -1.56
MSH6-211ENST00000606499 APCSP02743 223 aa5.31□□□□□ -1.56
MSH6-211ENST00000606499 MT-ND6P03923 174 aa5.31□□□□□ -1.56
MSH6-211ENST00000606499 KIAA1644Q3SXP7 199 aa5.31□□□□□ -1.56
MSH6-211ENST00000606499 OR10J3Q5JRS4 329 aa5.31□□□□□ -1.56
MSH6-211ENST00000606499 NEGR1Q7Z3B1 354 aa5.31□□□□□ -1.56
MSH6-211ENST00000606499 ATP6V0E2Q8NHE4 81 aa5.31□□□□□ -1.56
MSH6-211ENST00000606499 DEFB104AQ8WTQ1 72 aa5.31□□□□□ -1.56
MSH6-211ENST00000606499 FRZBQ92765 325 aa5.31□□□□□ -1.56
MSH6-211ENST00000606499 MRPL18Q9H0U6 180 aaKnown RBP5.31□□□□□ -1.56
MSH6-211ENST00000606499 TNFRSF18Q9Y5U5 241 aa5.31□□□□□ -1.56
MSH6-211ENST00000606499 KMT2CQ8NEZ4 4911 aaKnown RBP5.3□□□□□ -1.56
MSH6-211ENST00000606499 TRBV6-5A0A0K0K1A5 114 aa5.3□□□□□ -1.56
MSH6-211ENST00000606499 COLCA2A8K830 154 aa5.3□□□□□ -1.56
MSH6-211ENST00000606499 TNFRSF6BO95407 300 aa5.3□□□□□ -1.56
MSH6-211ENST00000606499 TCTAP57738 103 aa5.3□□□□□ -1.56
MSH6-211ENST00000606499 FABP9Q0Z7S8 132 aa5.3□□□□□ -1.56
MSH6-211ENST00000606499 ESRGQ1W209 222 aa5.3□□□□□ -1.56
MSH6-211ENST00000606499 COX19Q49B96 90 aa5.3□□□□□ -1.56
MSH6-211ENST00000606499 ORMDL3Q8N138 153 aa5.3□□□□□ -1.56
MSH6-211ENST00000606499 DNAJC30Q96LL9 226 aa5.3□□□□□ -1.56
MSH6-211ENST00000606499 PRELID3AQ96N28 172 aa5.3□□□□□ -1.56
MSH6-211ENST00000606499 TRAPPC1Q9Y5R8 145 aa5.3□□□□□ -1.56
MSH6-211ENST00000606499 SDHAF1A6NFY7 115 aa5.29□□□□□ -1.56
MSH6-211ENST00000606499 PPBPP02775 128 aa5.29□□□□□ -1.56
MSH6-211ENST00000606499 RAB5AP20339 215 aa5.29□□□□□ -1.56
MSH6-211ENST00000606499 LYPD5Q6UWN5 251 aa5.29□□□□□ -1.56
MSH6-211ENST00000606499 SH2D6Q7Z4S9 175 aa5.29□□□□□ -1.56
MSH6-211ENST00000606499 TMEM70Q9BUB7 260 aa5.29□□□□□ -1.56
MSH6-211ENST00000606499 ST20Q9HBF5 79 aa5.29□□□□□ -1.56
MSH6-211ENST00000606499 LINC00588Q9Y4M8 146 aa5.29□□□□□ -1.56
MSH6-211ENST00000606499 SUMO2P61956 95 aaKnown RBP5.28□□□□□ -1.56
MSH6-211ENST00000606499 NTM-AS1Q6ZSK4 140 aa5.28□□□□□ -1.56
MSH6-211ENST00000606499 DAZ4Q86SG3 579 aaKnown RBP5.28□□□□□ -1.56
MSH6-211ENST00000606499 UBE2DNLQ8IWF7 75 aa5.28□□□□□ -1.56
MSH6-211ENST00000606499 LINC00476Q8WZB0 136 aa5.28□□□□□ -1.56
MSH6-211ENST00000606499 ALKBH7Q9BT30 221 aaPredicted RBP5.28□□□□□ -1.56
MSH6-211ENST00000606499 GTSF1LQ9H1H1 148 aa5.28□□□□□ -1.56
MSH6-211ENST00000606499 DAZ3Q9NR90 486 aaKnown RBP5.28□□□□□ -1.56
MSH6-211ENST00000606499 HYDINQ4G0P3 5121 aa5.28□□□□□ -1.56
MSH6-211ENST00000606499 SACSQ9NZJ4 4579 aa5.28□□□□□ -1.56
MSH6-211ENST00000606499 TRBV27A0A0K0K1C4 114 aa5.27□□□□□ -1.57
MSH6-211ENST00000606499 LOC389332A0A1B0GUA5 103 aa5.27□□□□□ -1.57
MSH6-211ENST00000606499 LY6G6CO95867 125 aa5.27□□□□□ -1.57
MSH6-211ENST00000606499 PPP1R17O96001 155 aa5.27□□□□□ -1.57
MSH6-211ENST00000606499 TSHBP01222 138 aa5.27□□□□□ -1.57
MSH6-211ENST00000606499 TRGC2P03986 189 aa5.27□□□□□ -1.57
MSH6-211ENST00000606499 POLR2KP53803 58 aaKnown RBP5.27□□□□□ -1.57
MSH6-211ENST00000606499 CCL18P55774 89 aa5.27□□□□□ -1.57
MSH6-211ENST00000606499 WFDC10BQ8IUB3 73 aa5.27□□□□□ -1.57
MSH6-211ENST00000606499 SREK1IP1Q8N9Q2 155 aaPredicted RBP5.27□□□□□ -1.57
MSH6-211ENST00000606499 C20orf78Q9BR46 151 aa5.27□□□□□ -1.57
MSH6-211ENST00000606499 SMIM2Q9BVW6 85 aa5.27□□□□□ -1.57
MSH6-211ENST00000606499 MAP1LC3AQ9H492 121 aa5.27□□□□□ -1.57
MSH6-211ENST00000606499 LAMTOR2Q9Y2Q5 125 aa5.27□□□□□ -1.57
MSH6-211ENST00000606499 MRPS16Q9Y3D3 137 aaKnown RBP5.27□□□□□ -1.57
MSH6-211ENST00000606499 TRBV6-8A0A0A6YYG3 113 aa5.26□□□□□ -1.57
MSH6-211ENST00000606499 I3L3M4 83 aa5.26□□□□□ -1.57
MSH6-211ENST00000606499 PHOX2AO14813 284 aa5.26□□□□□ -1.57
MSH6-211ENST00000606499 PMCHP20382 165 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms