RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 IGHV3-30P01768 117 aa11.39□□□□□ -0.59
TRIM28-215ENST00000601150 IGHV3-33P01772 117 aa11.39□□□□□ -0.59
TRIM28-215ENST00000601150 IGHV3-30-3P0DP02 117 aa11.39□□□□□ -0.59
TRIM28-215ENST00000601150 IGHV3-30-5P0DP03 117 aa11.39□□□□□ -0.59
TRIM28-215ENST00000601150 SUMO4Q6EEV6 95 aa11.39□□□□□ -0.59
TRIM28-215ENST00000601150 C15orf54Q8N8G6 183 aa11.39□□□□□ -0.59
TRIM28-215ENST00000601150 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.39□□□□□ -0.59
TRIM28-215ENST00000601150 M0QY20 66 aa11.38□□□□□ -0.59
TRIM28-215ENST00000601150 FOXA3P55318 350 aaPredicted RBP11.38□□□□□ -0.59
TRIM28-215ENST00000601150 RPL23P62829 140 aaKnown RBP11.38□□□□□ -0.59
TRIM28-215ENST00000601150 ISOC2Q96AB3 205 aa11.38□□□□□ -0.59
TRIM28-215ENST00000601150 PGLYRP4Q96LB8 373 aa11.38□□□□□ -0.59
TRIM28-215ENST00000601150 GFRA4Q9GZZ7 299 aa11.38□□□□□ -0.59
TRIM28-215ENST00000601150 IBA57-AS1B1ANH7 110 aa11.37□□□□□ -0.59
TRIM28-215ENST00000601150 ADIRFQ15847 76 aa11.37□□□□□ -0.59
TRIM28-215ENST00000601150 SMIM15Q7Z3B0 74 aa11.37□□□□□ -0.59
TRIM28-215ENST00000601150 TSKUQ8WUA8 353 aa11.37□□□□□ -0.59
TRIM28-215ENST00000601150 BORCS7Q96B45 105 aa11.37□□□□□ -0.59
TRIM28-215ENST00000601150 DNAJC30Q96LL9 226 aa11.37□□□□□ -0.59
TRIM28-215ENST00000601150 PKD1P98161 4303 aa11.36□□□□□ -0.59
TRIM28-215ENST00000601150 FAM231BA6NCW3 169 aa11.36□□□□□ -0.59
TRIM28-215ENST00000601150 RASL11AQ6T310 242 aa11.36□□□□□ -0.59
TRIM28-215ENST00000601150 DAZ4Q86SG3 579 aaKnown RBP11.36□□□□□ -0.59
TRIM28-215ENST00000601150 DAZ3Q9NR90 486 aaKnown RBP11.36□□□□□ -0.59
TRIM28-215ENST00000601150 V9GYV3 84 aa11.36□□□□□ -0.59
TRIM28-215ENST00000601150 TRBV6-8A0A0A6YYG3 113 aa11.35□□□□□ -0.59
TRIM28-215ENST00000601150 TMEM97Q5BJF2 176 aa11.35□□□□□ -0.59
TRIM28-215ENST00000601150 URGCP-MRPS24S4R325 110 aa11.35□□□□□ -0.59
TRIM28-215ENST00000601150 HIGD1CA8MV81 97 aa11.34□□□□□ -0.59
TRIM28-215ENST00000601150 LAGE3Q14657 143 aa11.34□□□□□ -0.59
TRIM28-215ENST00000601150 NIT1Q86X76 327 aa11.34□□□□□ -0.59
TRIM28-215ENST00000601150 Q8N3U1 123 aa11.34□□□□□ -0.59
TRIM28-215ENST00000601150 A0A1B0GUT8 65 aa11.33□□□□□ -0.6
TRIM28-215ENST00000601150 CLLU1Q5K131 121 aa11.33□□□□□ -0.6
TRIM28-215ENST00000601150 Q9HAA7 133 aa11.33□□□□□ -0.6
TRIM28-215ENST00000601150 NIT2Q9NQR4 276 aa11.33□□□□□ -0.6
TRIM28-215ENST00000601150 A0A087WX48 190 aa11.32□□□□□ -0.6
TRIM28-215ENST00000601150 KCNIP4Q6PIL6 250 aa11.32□□□□□ -0.6
TRIM28-215ENST00000601150 CHCHD7Q9BUK0 85 aa11.32□□□□□ -0.6
TRIM28-215ENST00000601150 EREGO14944 169 aa11.31□□□□□ -0.6
TRIM28-215ENST00000601150 NTM-AS1Q6ZSK4 140 aa11.31□□□□□ -0.6
TRIM28-215ENST00000601150 GATD1Q8NB37 220 aa11.31□□□□□ -0.6
TRIM28-215ENST00000601150 FRZBQ92765 325 aa11.31□□□□□ -0.6
TRIM28-215ENST00000601150 TRAV8-3A0A0A6YYJ7 113 aa11.3□□□□□ -0.6
TRIM28-215ENST00000601150 PSCAO43653 123 aa11.3□□□□□ -0.6
TRIM28-215ENST00000601150 IFITM2Q01629 132 aa11.3□□□□□ -0.6
TRIM28-215ENST00000601150 RIGQ13278 110 aa11.3□□□□□ -0.6
TRIM28-215ENST00000601150 SPATA12Q7Z6I5 190 aa11.3□□□□□ -0.6
TRIM28-215ENST00000601150 NUP35Q8NFH5 326 aa11.3□□□□□ -0.6
TRIM28-215ENST00000601150 CHCHD5Q9BSY4 110 aa11.3□□□□□ -0.6
TRIM28-215ENST00000601150 NAT8BQ9UHF3 227 aa11.3□□□□□ -0.6
TRIM28-215ENST00000601150 TRBV25-1A0A075B6N4 114 aa11.29□□□□□ -0.6
TRIM28-215ENST00000601150 TRAV26-2A0A0B4J265 109 aa11.29□□□□□ -0.6
TRIM28-215ENST00000601150 TMEM262E9PQX1 116 aa11.29□□□□□ -0.6
TRIM28-215ENST00000601150 PKIAP61925 76 aa11.29□□□□□ -0.6
TRIM28-215ENST00000601150 ELOBQ15370 118 aa11.29□□□□□ -0.6
TRIM28-215ENST00000601150 A0A087WTM6 91 aa11.28□□□□□ -0.6
TRIM28-215ENST00000601150 IGHV1-24A0A0C4DH33 117 aa11.28□□□□□ -0.6
TRIM28-215ENST00000601150 SMIM27A0A1W2PRY6 76 aa11.28□□□□□ -0.6
TRIM28-215ENST00000601150 C16orf90A8MZG2 172 aa11.28□□□□□ -0.6
TRIM28-215ENST00000601150 TM2D2Q9BX73 214 aa11.28□□□□□ -0.6
TRIM28-215ENST00000601150 TMEM191AQ9H0A3 160 aa11.28□□□□□ -0.6
TRIM28-215ENST00000601150 KLK12Q9UKR0 248 aa11.28□□□□□ -0.6
TRIM28-215ENST00000601150 IQCJQ1A5X6 159 aa11.27□□□□□ -0.61
TRIM28-215ENST00000601150 PKHD1P08F94 4074 aa11.26□□□□□ -0.61
TRIM28-215ENST00000601150 KRTAP10-2P60368 255 aa11.26□□□□□ -0.61
TRIM28-215ENST00000601150 MPV17L2Q567V2 206 aa11.26□□□□□ -0.61
TRIM28-215ENST00000601150 RPL39LQ96EH5 51 aaKnown RBP11.26□□□□□ -0.61
TRIM28-215ENST00000601150 PNRC1Q12796 327 aaPredicted RBP11.25□□□□□ -0.61
TRIM28-215ENST00000601150 COTL1Q14019 142 aa11.25□□□□□ -0.61
TRIM28-215ENST00000601150 RMI2Q96E14 147 aa11.25□□□□□ -0.61
TRIM28-215ENST00000601150 PPP1R2P9O14990 202 aa11.24□□□□□ -0.61
TRIM28-215ENST00000601150 GAGE6Q13070 117 aa11.24□□□□□ -0.61
TRIM28-215ENST00000601150 ATRAIDQ6UW56 229 aa11.24□□□□□ -0.61
TRIM28-215ENST00000601150 UBE2WQ96B02 151 aa11.24□□□□□ -0.61
TRIM28-215ENST00000601150 MRAP2Q96G30 205 aa11.24□□□□□ -0.61
TRIM28-215ENST00000601150 RNF185Q96GF1 192 aa11.24□□□□□ -0.61
TRIM28-215ENST00000601150 TMEM243Q9BU79 118 aa11.24□□□□□ -0.61
TRIM28-215ENST00000601150 PGPEP1Q9NXJ5 209 aa11.24□□□□□ -0.61
TRIM28-215ENST00000601150 DNAH11Q96DT5 4516 aa11.24□□□□□ -0.61
TRIM28-215ENST00000601150 A0A1B0GW15 77 aa11.23□□□□□ -0.61
TRIM28-215ENST00000601150 LRCOL1A6NCL2 159 aa11.23□□□□□ -0.61
TRIM28-215ENST00000601150 ANGP03950 147 aaKnown RBP11.23□□□□□ -0.61
TRIM28-215ENST00000601150 RAB4AP20338 218 aa11.23□□□□□ -0.61
TRIM28-215ENST00000601150 Q0VG73 95 aa11.23□□□□□ -0.61
TRIM28-215ENST00000601150 AMN1Q8IY45 258 aa11.23□□□□□ -0.61
TRIM28-215ENST00000601150 Q8N976 141 aa11.23□□□□□ -0.61
TRIM28-215ENST00000601150 COX11Q9Y6N1 276 aa11.23□□□□□ -0.61
TRIM28-215ENST00000601150 TRBV6-5A0A0K0K1A5 114 aa11.22□□□□□ -0.61
TRIM28-215ENST00000601150 AMTP48728 403 aa11.22□□□□□ -0.61
TRIM28-215ENST00000601150 RBX1P62877 108 aa11.22□□□□□ -0.61
TRIM28-215ENST00000601150 UQCC3Q6UW78 93 aa11.22□□□□□ -0.61
TRIM28-215ENST00000601150 DEFB104AQ8WTQ1 72 aa11.22□□□□□ -0.61
TRIM28-215ENST00000601150 DYNC1H1Q14204 4646 aaKnown RBP11.21□□□□□ -0.61
TRIM28-215ENST00000601150 IGKV2D-24A0A075B6R9 120 aa11.21□□□□□ -0.61
TRIM28-215ENST00000601150 SDHAF1A6NFY7 115 aa11.21□□□□□ -0.61
TRIM28-215ENST00000601150 NCR2O95944 276 aa11.21□□□□□ -0.61
TRIM28-215ENST00000601150 CRPP02741 224 aa11.21□□□□□ -0.61
TRIM28-215ENST00000601150 CAMPP49913 170 aa11.21□□□□□ -0.61
TRIM28-215ENST00000601150 CDPF1Q6NVV7 123 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms