RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 TRBV10-1A0A0K0K1A3 114 aa10.93□□□□□ -0.66
UPF1-206ENST00000598471 TRBV6-5A0A0K0K1A5 114 aa10.93□□□□□ -0.66
UPF1-206ENST00000598471 GAS8-AS1O95177 125 aa10.93□□□□□ -0.66
UPF1-206ENST00000598471 FHL2Q14192 279 aa10.93□□□□□ -0.66
UPF1-206ENST00000598471 C12orf74Q32Q52 190 aa10.93□□□□□ -0.66
UPF1-206ENST00000598471 DNAJC30Q96LL9 226 aa10.93□□□□□ -0.66
UPF1-206ENST00000598471 PRADC1Q9BSG0 188 aa10.93□□□□□ -0.66
UPF1-206ENST00000598471 TNFRSF18Q9Y5U5 241 aa10.93□□□□□ -0.66
UPF1-206ENST00000598471 PMCHP20382 165 aa10.92□□□□□ -0.66
UPF1-206ENST00000598471 SUMO2P61956 95 aaKnown RBP10.92□□□□□ -0.66
UPF1-206ENST00000598471 Q6ZSN1 163 aa10.92□□□□□ -0.66
UPF1-206ENST00000598471 SLC25A29Q8N8R3 303 aa10.92□□□□□ -0.66
UPF1-206ENST00000598471 PRSS3P2Q8NHM4 247 aa10.92□□□□□ -0.66
UPF1-206ENST00000598471 PRO0255Q9UI72 69 aa10.92□□□□□ -0.66
UPF1-206ENST00000598471 HHLA3Q9XRX5 114 aa10.92□□□□□ -0.66
UPF1-206ENST00000598471 LOC389332A0A1B0GUA5 103 aa10.91□□□□□ -0.66
UPF1-206ENST00000598471 F5H768 121 aa10.91□□□□□ -0.66
UPF1-206ENST00000598471 HTN3P15516 51 aa10.91□□□□□ -0.66
UPF1-206ENST00000598471 NDUFA6P56556 154 aa10.91□□□□□ -0.66
UPF1-206ENST00000598471 RPL36AP83881 106 aaKnown RBP10.91□□□□□ -0.66
UPF1-206ENST00000598471 IQCJQ1A5X6 159 aa10.91□□□□□ -0.66
UPF1-206ENST00000598471 FA2HQ7L5A8 372 aa10.91□□□□□ -0.66
UPF1-206ENST00000598471 RPL36ALQ969Q0 106 aaKnown RBP10.91□□□□□ -0.66
UPF1-206ENST00000598471 NXT2Q9NPJ8 142 aaKnown RBP10.91□□□□□ -0.66
UPF1-206ENST00000598471 NACAE9PAV3 2078 aa10.91□□□□□ -0.66
UPF1-206ENST00000598471 PRSS47A8MTI9 375 aa10.9□□□□□ -0.66
UPF1-206ENST00000598471 HOXA5P20719 270 aa10.9□□□□□ -0.66
UPF1-206ENST00000598471 RPL32P62910 135 aaKnown RBP10.9□□□□□ -0.66
UPF1-206ENST00000598471 NEXN-AS1Q8NBZ9 246 aa10.9□□□□□ -0.66
UPF1-206ENST00000598471 SMIM2Q9BVW6 85 aa10.9□□□□□ -0.66
UPF1-206ENST00000598471 SDHAF1A6NFY7 115 aa10.89□□□□□ -0.67
UPF1-206ENST00000598471 P0DMU3 169 aa10.89□□□□□ -0.67
UPF1-206ENST00000598471 FAM231AP0DMU4 169 aa10.89□□□□□ -0.67
UPF1-206ENST00000598471 FAM231CP0DMU5 169 aa10.89□□□□□ -0.67
UPF1-206ENST00000598471 CRYBA4P53673 196 aa10.89□□□□□ -0.67
UPF1-206ENST00000598471 NANOS2P60321 138 aaKnown RBP10.89□□□□□ -0.67
UPF1-206ENST00000598471 Q6ZTC4 211 aa10.89□□□□□ -0.67
UPF1-206ENST00000598471 VCYO14598 125 aa10.88□□□□□ -0.67
UPF1-206ENST00000598471 PAX4O43316 350 aa10.88□□□□□ -0.67
UPF1-206ENST00000598471 COA6Q5JTJ3 125 aaKnown RBP10.88□□□□□ -0.67
UPF1-206ENST00000598471 RNASEKQ6P5S7 137 aaKnown RBP10.88□□□□□ -0.67
UPF1-206ENST00000598471 Q8N8P6 123 aa10.88□□□□□ -0.67
UPF1-206ENST00000598471 CHCHD1Q96BP2 118 aaKnown RBP10.88□□□□□ -0.67
UPF1-206ENST00000598471 TMEM70Q9BUB7 260 aa10.88□□□□□ -0.67
UPF1-206ENST00000598471 TRBV7-3A0A075B6L6 115 aa10.87□□□□□ -0.67
UPF1-206ENST00000598471 TCAPO15273 167 aa10.87□□□□□ -0.67
UPF1-206ENST00000598471 SERF1AO75920 110 aa10.87□□□□□ -0.67
UPF1-206ENST00000598471 LINC00614P0C842 121 aa10.87□□□□□ -0.67
UPF1-206ENST00000598471 IFI27P40305 119 aaPredicted RBP10.87□□□□□ -0.67
UPF1-206ENST00000598471 POLR2KP53803 58 aaKnown RBP10.87□□□□□ -0.67
UPF1-206ENST00000598471 NIT1Q86X76 327 aa10.87□□□□□ -0.67
UPF1-206ENST00000598471 ZNRF2Q8NHG8 242 aa10.87□□□□□ -0.67
UPF1-206ENST00000598471 KIR2DL4Q99706 377 aa10.87□□□□□ -0.67
UPF1-206ENST00000598471 AP5S1Q9NUS5 200 aa10.87□□□□□ -0.67
UPF1-206ENST00000598471 TRAV10A0A0B4J240 114 aa10.86□□□□□ -0.67
UPF1-206ENST00000598471 GAGE12JA6NER3 117 aa10.86□□□□□ -0.67
UPF1-206ENST00000598471 K7EMI3 77 aa10.86□□□□□ -0.67
UPF1-206ENST00000598471 GAGE1Q13065 139 aa10.86□□□□□ -0.67
UPF1-206ENST00000598471 GAGE4Q13068 117 aa10.86□□□□□ -0.67
UPF1-206ENST00000598471 GAGE5Q13069 117 aa10.86□□□□□ -0.67
UPF1-206ENST00000598471 GAGE13Q4V321 117 aa10.86□□□□□ -0.67
UPF1-206ENST00000598471 TRAV26-1A0A087WT03 109 aa10.85□□□□□ -0.67
UPF1-206ENST00000598471 DEFB131BA0A096LNP1 70 aa10.85□□□□□ -0.67
UPF1-206ENST00000598471 TRBV27A0A0K0K1C4 114 aa10.85□□□□□ -0.67
UPF1-206ENST00000598471 I3L3M4 83 aa10.85□□□□□ -0.67
UPF1-206ENST00000598471 HSBP1O75506 76 aa10.85□□□□□ -0.67
UPF1-206ENST00000598471 GYPEP15421 78 aa10.85□□□□□ -0.67
UPF1-206ENST00000598471 DAZ4Q86SG3 579 aaKnown RBP10.85□□□□□ -0.67
UPF1-206ENST00000598471 DAZ3Q9NR90 486 aaKnown RBP10.85□□□□□ -0.67
UPF1-206ENST00000598471 HUWE1Q7Z6Z7 4374 aaKnown RBP10.85□□□□□ -0.67
UPF1-206ENST00000598471 TENM3Q9P273 2699 aa10.85□□□□□ -0.67
UPF1-206ENST00000598471 IGLV2-18A0A075B6J9 118 aa10.84□□□□□ -0.67
UPF1-206ENST00000598471 A0A0J9YY99 117 aa10.84□□□□□ -0.67
UPF1-206ENST00000598471 FCER1GP30273 86 aa10.84□□□□□ -0.67
UPF1-206ENST00000598471 UBE2D3P61077 147 aa10.84□□□□□ -0.67
UPF1-206ENST00000598471 UBE2D2P62837 147 aa10.84□□□□□ -0.67
UPF1-206ENST00000598471 LOC100131303A0A0U1RQF7 123 aa10.83□□□□□ -0.68
UPF1-206ENST00000598471 LINC01546A6NGU7 62 aa10.83□□□□□ -0.68
UPF1-206ENST00000598471 H3BNG1 76 aa10.83□□□□□ -0.68
UPF1-206ENST00000598471 ESDP10768 282 aa10.83□□□□□ -0.68
UPF1-206ENST00000598471 SNRPEP62304 92 aaKnown RBP10.83□□□□□ -0.68
UPF1-206ENST00000598471 ORMDL2Q53FV1 153 aa10.83□□□□□ -0.68
UPF1-206ENST00000598471 NEGR1Q7Z3B1 354 aa10.83□□□□□ -0.68
UPF1-206ENST00000598471 Q9UF83 564 aa10.83□□□□□ -0.68
UPF1-206ENST00000598471 ICOSQ9Y6W8 199 aa10.83□□□□□ -0.68
UPF1-206ENST00000598471 G0S2P27469 103 aa10.82□□□□□ -0.68
UPF1-206ENST00000598471 S100A2P29034 98 aa10.82□□□□□ -0.68
UPF1-206ENST00000598471 COTL1Q14019 142 aa10.82□□□□□ -0.68
UPF1-206ENST00000598471 LAGE3Q14657 143 aa10.82□□□□□ -0.68
UPF1-206ENST00000598471 MRPL23Q16540 153 aaKnown RBP10.82□□□□□ -0.68
UPF1-206ENST00000598471 SH2D6Q7Z4S9 175 aa10.82□□□□□ -0.68
UPF1-206ENST00000598471 URB1-AS1Q96HZ7 61 aa10.82□□□□□ -0.68
UPF1-206ENST00000598471 VSIG2Q96IQ7 327 aa10.82□□□□□ -0.68
UPF1-206ENST00000598471 C5orf52A6NGY3 159 aa10.81□□□□□ -0.68
UPF1-206ENST00000598471 LINC00694P0DN24 101 aa10.81□□□□□ -0.68
UPF1-206ENST00000598471 LINC00310P59036 64 aa10.81□□□□□ -0.68
UPF1-206ENST00000598471 TMEM97Q5BJF2 176 aa10.81□□□□□ -0.68
UPF1-206ENST00000598471 PHLDA1Q8WV24 401 aaPredicted RBP10.81□□□□□ -0.68
UPF1-206ENST00000598471 IGHV3-38A0A0C4DH36 116 aa10.8□□□□□ -0.68
UPF1-206ENST00000598471 NUDT3O95989 172 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms