RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ZNF56Q15929 161 aa6.22□□□□□ -1.41
VPS35-206ENST00000565228 CT83Q5H943 113 aa6.22□□□□□ -1.41
VPS35-206ENST00000565228 TSKUQ8WUA8 353 aa6.22□□□□□ -1.41
VPS35-206ENST00000565228 RNF185Q96GF1 192 aa6.22□□□□□ -1.41
VPS35-206ENST00000565228 GTSF1LQ9H1H1 148 aa6.22□□□□□ -1.41
VPS35-206ENST00000565228 NAT8Q9UHE5 227 aa6.22□□□□□ -1.41
VPS35-206ENST00000565228 A0A1W2PPQ1 181 aa6.21□□□□□ -1.42
VPS35-206ENST00000565228 HIGD1CA8MV81 97 aa6.21□□□□□ -1.42
VPS35-206ENST00000565228 F2Z2F3 143 aa6.21□□□□□ -1.42
VPS35-206ENST00000565228 MGPP08493 103 aa6.21□□□□□ -1.42
VPS35-206ENST00000565228 FAM74A3Q4VXF1 159 aa6.21□□□□□ -1.42
VPS35-206ENST00000565228 SOHLH1Q5JUK2 328 aa6.21□□□□□ -1.42
VPS35-206ENST00000565228 LELP1Q5T871 98 aa6.21□□□□□ -1.42
VPS35-206ENST00000565228 WDR73Q6P4I2 378 aa6.21□□□□□ -1.42
VPS35-206ENST00000565228 GATD1Q8NB37 220 aa6.21□□□□□ -1.42
VPS35-206ENST00000565228 NUP35Q8NFH5 326 aa6.21□□□□□ -1.42
VPS35-206ENST00000565228 SMDT1Q9H4I9 107 aa6.21□□□□□ -1.42
VPS35-206ENST00000565228 BIN3Q9NQY0 253 aa6.21□□□□□ -1.42
VPS35-206ENST00000565228 A8MWL6 223 aa6.2□□□□□ -1.42
VPS35-206ENST00000565228 FUSP35637 526 aaKnown RBP eCLIP6.2□□□□□ -1.42
VPS35-206ENST00000565228 TWIST1Q15672 202 aa6.2□□□□□ -1.42
VPS35-206ENST00000565228 C1orf134Q5TEV5 83 aa6.2□□□□□ -1.42
VPS35-206ENST00000565228 C6orf223Q8N319 242 aa6.2□□□□□ -1.42
VPS35-206ENST00000565228 RPL39LQ96EH5 51 aaKnown RBP6.2□□□□□ -1.42
VPS35-206ENST00000565228 AP1S3Q96PC3 154 aa6.2□□□□□ -1.42
VPS35-206ENST00000565228 APOBP04114 4563 aaKnown RBP6.2□□□□□ -1.42
VPS35-206ENST00000565228 DNAH8Q96JB1 4490 aa6.2□□□□□ -1.42
VPS35-206ENST00000565228 TRBV7-3A0A075B6L6 115 aa6.19□□□□□ -1.42
VPS35-206ENST00000565228 TRBV10-1A0A0K0K1A3 114 aa6.19□□□□□ -1.42
VPS35-206ENST00000565228 SMIM27A0A1W2PRY6 76 aa6.19□□□□□ -1.42
VPS35-206ENST00000565228 PRSS29PA6NIE9 313 aa6.19□□□□□ -1.42
VPS35-206ENST00000565228 F5H697 171 aa6.19□□□□□ -1.42
VPS35-206ENST00000565228 IGHV3-30P01768 117 aa6.19□□□□□ -1.42
VPS35-206ENST00000565228 IGHV3-33P01772 117 aa6.19□□□□□ -1.42
VPS35-206ENST00000565228 IGHV3-30-3P0DP02 117 aa6.19□□□□□ -1.42
VPS35-206ENST00000565228 IGHV3-30-5P0DP03 117 aa6.19□□□□□ -1.42
VPS35-206ENST00000565228 RPS10P46783 165 aaKnown RBP6.19□□□□□ -1.42
VPS35-206ENST00000565228 DPH3P1Q9H4G8 78 aa6.19□□□□□ -1.42
VPS35-206ENST00000565228 HSPG2P98160 4391 aa6.19□□□□□ -1.42
VPS35-206ENST00000565228 XKRY2A2RUG3 117 aa6.18□□□□□ -1.42
VPS35-206ENST00000565228 SMKR1H3BMG3 65 aa6.18□□□□□ -1.42
VPS35-206ENST00000565228 LINC01556Q5JQF7 62 aa6.18□□□□□ -1.42
VPS35-206ENST00000565228 DAZ4Q86SG3 579 aaKnown RBP6.18□□□□□ -1.42
VPS35-206ENST00000565228 GFRA4Q9GZZ7 299 aa6.18□□□□□ -1.42
VPS35-206ENST00000565228 DAZ3Q9NR90 486 aaKnown RBP6.18□□□□□ -1.42
VPS35-206ENST00000565228 A0A1B0GXF2 115 aa6.17□□□□□ -1.42
VPS35-206ENST00000565228 TMEM218A2RU14 115 aa6.17□□□□□ -1.42
VPS35-206ENST00000565228 LINC00862A6NCI5 91 aa6.17□□□□□ -1.42
VPS35-206ENST00000565228 RAB4AP20338 218 aa6.17□□□□□ -1.42
VPS35-206ENST00000565228 KRTAP10-2P60368 255 aa6.17□□□□□ -1.42
VPS35-206ENST00000565228 RAB14P61106 215 aa6.17□□□□□ -1.42
VPS35-206ENST00000565228 RPL36AP83881 106 aaKnown RBP6.17□□□□□ -1.42
VPS35-206ENST00000565228 OR10J3Q5JRS4 329 aa6.17□□□□□ -1.42
VPS35-206ENST00000565228 SH2D6Q7Z4S9 175 aa6.17□□□□□ -1.42
VPS35-206ENST00000565228 COMMD7Q86VX2 200 aa6.17□□□□□ -1.42
VPS35-206ENST00000565228 NIT1Q86X76 327 aa6.17□□□□□ -1.42
VPS35-206ENST00000565228 AMN1Q8IY45 258 aa6.17□□□□□ -1.42
VPS35-206ENST00000565228 MAPKAPK5-AS1Q8N8E1 139 aa6.17□□□□□ -1.42
VPS35-206ENST00000565228 RPL36ALQ969Q0 106 aaKnown RBP6.17□□□□□ -1.42
VPS35-206ENST00000565228 UBR4Q5T4S7 5183 aa6.16□□□□□ -1.42
VPS35-206ENST00000565228 TRBV6-8A0A0A6YYG3 113 aa6.16□□□□□ -1.42
VPS35-206ENST00000565228 A0A1B0GUT8 65 aa6.16□□□□□ -1.42
VPS35-206ENST00000565228 FAM231BA6NCW3 169 aa6.16□□□□□ -1.42
VPS35-206ENST00000565228 TRGC1P0CF51 173 aa6.16□□□□□ -1.42
VPS35-206ENST00000565228 SMIM17P0DL12 118 aa6.16□□□□□ -1.42
VPS35-206ENST00000565228 WFDC2Q14508 124 aa6.16□□□□□ -1.42
VPS35-206ENST00000565228 RASL11AQ6T310 242 aa6.16□□□□□ -1.42
VPS35-206ENST00000565228 LINC00336Q6ZUF6 198 aa6.16□□□□□ -1.42
VPS35-206ENST00000565228 LOC100996750A0A140TA64 210 aa6.15□□□□□ -1.42
VPS35-206ENST00000565228 IBA57-AS1B1ANH7 110 aa6.15□□□□□ -1.42
VPS35-206ENST00000565228 NCR2O95944 276 aa6.15□□□□□ -1.42
VPS35-206ENST00000565228 MPV17L2Q567V2 206 aa6.15□□□□□ -1.42
VPS35-206ENST00000565228 C10orf91Q5T1B1 145 aa6.15□□□□□ -1.42
VPS35-206ENST00000565228 MRPL54Q6P161 138 aaKnown RBP6.15□□□□□ -1.42
VPS35-206ENST00000565228 C15orf54Q8N8G6 183 aa6.15□□□□□ -1.42
VPS35-206ENST00000565228 NRACQ8N912 160 aa6.15□□□□□ -1.42
VPS35-206ENST00000565228 KRTAP4-6Q9BYQ5 205 aa6.15□□□□□ -1.42
VPS35-206ENST00000565228 TMEM191AQ9H0A3 160 aa6.15□□□□□ -1.42
VPS35-206ENST00000565228 NIT2Q9NQR4 276 aa6.15□□□□□ -1.42
VPS35-206ENST00000565228 NAT8BQ9UHF3 227 aa6.15□□□□□ -1.42
VPS35-206ENST00000565228 TRAV8-6A0A0B4J262 113 aa6.14□□□□□ -1.43
VPS35-206ENST00000565228 LRCOL1A6NCL2 159 aa6.14□□□□□ -1.43
VPS35-206ENST00000565228 MRPL51Q4U2R6 128 aaKnown RBP6.14□□□□□ -1.43
VPS35-206ENST00000565228 TTC32Q5I0X7 151 aa6.14□□□□□ -1.43
VPS35-206ENST00000565228 UQCC3Q6UW78 93 aa6.14□□□□□ -1.43
VPS35-206ENST00000565228 Q8N976 141 aa6.14□□□□□ -1.43
VPS35-206ENST00000565228 CAMPP49913 170 aa6.13□□□□□ -1.43
VPS35-206ENST00000565228 GAGE6Q13070 117 aa6.13□□□□□ -1.43
VPS35-206ENST00000565228 FAM104BQ5XKR9 115 aa6.13□□□□□ -1.43
VPS35-206ENST00000565228 ATRAIDQ6UW56 229 aa6.13□□□□□ -1.43
VPS35-206ENST00000565228 ENHOQ6UWT2 76 aa6.13□□□□□ -1.43
VPS35-206ENST00000565228 IGLV4-60A0A075B6I1 120 aa6.12□□□□□ -1.43
VPS35-206ENST00000565228 A0A087WWC5 75 aa6.12□□□□□ -1.43
VPS35-206ENST00000565228 TRBV6-5A0A0K0K1A5 114 aa6.12□□□□□ -1.43
VPS35-206ENST00000565228 F8W036 122 aa6.12□□□□□ -1.43
VPS35-206ENST00000565228 BTF3P20290 206 aaKnown RBP6.12□□□□□ -1.43
VPS35-206ENST00000565228 POLR2KP53803 58 aaKnown RBP6.12□□□□□ -1.43
VPS35-206ENST00000565228 IQCJQ1A5X6 159 aa6.12□□□□□ -1.43
VPS35-206ENST00000565228 KRTAP26-1Q6PEX3 210 aa6.12□□□□□ -1.43
VPS35-206ENST00000565228 C20orf203Q8NBC4 194 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms