RNA–Protein interactions for RNA: ENST00000560975.5

TPM1-228, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 2,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-228ENST00000560975 TRBV27A0A0K0K1C4 114 aa12.29□□□□□ -0.44
TPM1-228ENST00000560975 Q6Q795 121 aa12.29□□□□□ -0.44
TPM1-228ENST00000560975 CHCHD5Q9BSY4 110 aa12.29□□□□□ -0.44
TPM1-228ENST00000560975 H7C423 109 aa12.28□□□□□ -0.44
TPM1-228ENST00000560975 M0R2P5 195 aa12.28□□□□□ -0.44
TPM1-228ENST00000560975 NXPH4O95158 308 aa12.28□□□□□ -0.44
TPM1-228ENST00000560975 CFAP161Q6P656 301 aa12.28□□□□□ -0.44
TPM1-228ENST00000560975 FAM19A4Q96LR4 140 aa12.28□□□□□ -0.44
TPM1-228ENST00000560975 FAM110AQ9BQ89 295 aa12.28□□□□□ -0.44
TPM1-228ENST00000560975 PRRC2AP48634 2157 aaKnown RBP12.28□□□□□ -0.44
TPM1-228ENST00000560975 SIRPDQ9H106 197 aa12.28□□□□□ -0.44
TPM1-228ENST00000560975 COL6A6A6NMZ7 2263 aa12.27□□□□□ -0.44
TPM1-228ENST00000560975 IGHV3OR16-10A0A075B7F0 116 aa12.27□□□□□ -0.45
TPM1-228ENST00000560975 TRAV8-3A0A0A6YYJ7 113 aa12.27□□□□□ -0.45
TPM1-228ENST00000560975 TRAV41A0A0B4J266 112 aa12.27□□□□□ -0.45
TPM1-228ENST00000560975 TRBV30A0A0K0K1B3 111 aa12.27□□□□□ -0.45
TPM1-228ENST00000560975 ICOSQ9Y6W8 199 aa12.27□□□□□ -0.45
TPM1-228ENST00000560975 IGKV3-20P01619 116 aa12.27□□□□□ -0.45
TPM1-228ENST00000560975 KLK9Q2XQG4 91 aa12.26□□□□□ -0.45
TPM1-228ENST00000560975 KLK9Q9UKQ9 250 aa12.26□□□□□ -0.45
TPM1-228ENST00000560975 IGHV3-30-3P0DP02 117 aa12.26□□□□□ -0.45
TPM1-228ENST00000560975 RNASE13Q5GAN3 156 aaKnown RBP12.26□□□□□ -0.45
TPM1-228ENST00000560975 ADAMTSL4-AS1Q5T5F5 129 aa12.26□□□□□ -0.45
TPM1-228ENST00000560975 CELSR1Q9NYQ6 3014 aa12.25□□□□□ -0.45
TPM1-228ENST00000560975 SPTAN1Q13813 2472 aaKnown RBP12.25□□□□□ -0.45
TPM1-228ENST00000560975 A8MZ25 164 aa12.25□□□□□ -0.45
TPM1-228ENST00000560975 IGHV1-69P01742 117 aa12.25□□□□□ -0.45
TPM1-228ENST00000560975 IGF2-ASQ6U949 168 aa12.25□□□□□ -0.45
TPM1-228ENST00000560975 C5orf56Q8N8D9 126 aa12.25□□□□□ -0.45
TPM1-228ENST00000560975 MDFICQ9P1T7 246 aa12.25□□□□□ -0.45
TPM1-228ENST00000560975 EDN2P20800 178 aa12.24□□□□□ -0.45
TPM1-228ENST00000560975 APRG1Q8IVJ8 170 aa12.24□□□□□ -0.45
TPM1-228ENST00000560975 TIMM21Q9BVV7 248 aa12.24□□□□□ -0.45
TPM1-228ENST00000560975 RHPN1-AS1Q9BWJ2 59 aa12.24□□□□□ -0.45
TPM1-228ENST00000560975 IGLV4-3A0A075B6K6 122 aa12.24□□□□□ -0.45
TPM1-228ENST00000560975 TRAV12-2A0A075B6T6 113 aa12.24□□□□□ -0.45
TPM1-228ENST00000560975 M0QY20 66 aa12.24□□□□□ -0.45
TPM1-228ENST00000560975 C20orf203Q8NBC4 194 aa12.24□□□□□ -0.45
TPM1-228ENST00000560975 CDSNQ15517 529 aa12.23□□□□□ -0.45
TPM1-228ENST00000560975 CEMP1Q6PRD7 247 aaPredicted RBP12.23□□□□□ -0.45
TPM1-228ENST00000560975 LITAFQ99732 161 aa12.23□□□□□ -0.45
TPM1-228ENST00000560975 TRBV6-5A0A0K0K1A5 114 aa12.23□□□□□ -0.45
TPM1-228ENST00000560975 SORL1Q92673 2214 aa12.23□□□□□ -0.45
TPM1-228ENST00000560975 NDUFA4O00483 81 aa12.22□□□□□ -0.45
TPM1-228ENST00000560975 COX6CP09669 75 aa12.22□□□□□ -0.45
TPM1-228ENST00000560975 NSUN5P1Q3KNT7 163 aa12.22□□□□□ -0.45
TPM1-228ENST00000560975 ZFHX2Q9C0A1 2572 aaPredicted RBP12.22□□□□□ -0.45
TPM1-228ENST00000560975 KLLNB2CW77 178 aa12.22□□□□□ -0.45
TPM1-228ENST00000560975 FAM223BA6NKX1 122 aa12.21□□□□□ -0.45
TPM1-228ENST00000560975 FAM223AQ8IWN6 122 aa12.21□□□□□ -0.45
TPM1-228ENST00000560975 RHOHQ15669 191 aa12.21□□□□□ -0.45
TPM1-228ENST00000560975 DAND5Q8N907 189 aa12.21□□□□□ -0.45
TPM1-228ENST00000560975 CD28P10747 220 aa12.2□□□□□ -0.46
TPM1-228ENST00000560975 NDUFA12Q9UI09 145 aa12.2□□□□□ -0.46
TPM1-228ENST00000560975 A0A0J9YX75 114 aa12.2□□□□□ -0.46
TPM1-228ENST00000560975 CCL21O00585 134 aa12.2□□□□□ -0.46
TPM1-228ENST00000560975 UBTD1Q9HAC8 227 aa12.2□□□□□ -0.46
TPM1-228ENST00000560975 IGHV3-73A0A0B4J1V6 119 aa12.2□□□□□ -0.46
TPM1-228ENST00000560975 I3L3M4 83 aa12.2□□□□□ -0.46
TPM1-228ENST00000560975 TRGV11A0A075B6L2 103 aa12.19□□□□□ -0.46
TPM1-228ENST00000560975 H3BT86 120 aa12.19□□□□□ -0.46
TPM1-228ENST00000560975 NPFFO15130 113 aa12.19□□□□□ -0.46
TPM1-228ENST00000560975 IGHV3-16A0A0C4DH30 117 aa12.19□□□□□ -0.46
TPM1-228ENST00000560975 LINC01600Q96MT4 127 aa12.19□□□□□ -0.46
TPM1-228ENST00000560975 ZNF292O60281 2723 aa12.18□□□□□ -0.46
TPM1-228ENST00000560975 PF4V1P10720 104 aa12.18□□□□□ -0.46
TPM1-228ENST00000560975 C11orf71Q6IPW1 123 aa12.18□□□□□ -0.46
TPM1-228ENST00000560975 CEP295Q9C0D2 2601 aa12.18□□□□□ -0.46
TPM1-228ENST00000560975 LY6EQ16553 131 aa12.17□□□□□ -0.46
TPM1-228ENST00000560975 LST1O00453 97 aa12.17□□□□□ -0.46
TPM1-228ENST00000560975 MOB4Q9Y3A3 225 aa12.17□□□□□ -0.46
TPM1-228ENST00000560975 FAM236AA0A1B0GUQ0 79 aa12.16□□□□□ -0.46
TPM1-228ENST00000560975 FAM236BA0A1B0GV22 79 aa12.16□□□□□ -0.46
TPM1-228ENST00000560975 BRI3O95415 125 aa12.16□□□□□ -0.46
TPM1-228ENST00000560975 MIAQ16674 131 aa12.16□□□□□ -0.46
TPM1-228ENST00000560975 BRD3OSQ6XYD6 125 aa12.16□□□□□ -0.46
TPM1-228ENST00000560975 C9orf85Q96MD7 179 aa12.16□□□□□ -0.46
TPM1-228ENST00000560975 DUX5Q96PT3 197 aa12.16□□□□□ -0.46
TPM1-228ENST00000560975 COL12A1Q99715 3063 aa12.15□□□□□ -0.46
TPM1-228ENST00000560975 IGHV1-58A0A0C4DH39 117 aa12.15□□□□□ -0.46
TPM1-228ENST00000560975 HTN1P15515 57 aa12.15□□□□□ -0.46
TPM1-228ENST00000560975 MRPL23Q16540 153 aaKnown RBP12.15□□□□□ -0.46
TPM1-228ENST00000560975 C19orf54Q5BKX5 351 aa12.15□□□□□ -0.46
TPM1-228ENST00000560975 LINC01587Q99440 93 aa12.15□□□□□ -0.46
TPM1-228ENST00000560975 TMEM61Q8N0U2 210 aa12.14□□□□□ -0.47
TPM1-228ENST00000560975 PROK1P58294 105 aa12.14□□□□□ -0.47
TPM1-228ENST00000560975 SPINK13Q1W4C9 94 aa12.14□□□□□ -0.47
TPM1-228ENST00000560975 FAM104AQ969W3 186 aa12.14□□□□□ -0.47
TPM1-228ENST00000560975 SPANXDQ9BXN6 97 aa12.14□□□□□ -0.47
TPM1-228ENST00000560975 SPANXCQ9NY87 97 aa12.14□□□□□ -0.47
TPM1-228ENST00000560975 A0A0U1RRA0 63 aa12.13□□□□□ -0.47
TPM1-228ENST00000560975 TMEM101Q96IK0 257 aa12.13□□□□□ -0.47
TPM1-228ENST00000560975 PPDPFQ9H3Y8 114 aa12.13□□□□□ -0.47
TPM1-228ENST00000560975 ID1P41134 155 aa12.13□□□□□ -0.47
TPM1-228ENST00000560975 DAZ1Q9NQZ3 744 aaKnown RBP12.12□□□□□ -0.47
TPM1-228ENST00000560975 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.12□□□□□ -0.475e-6■■■□□ 16.3
TPM1-228ENST00000560975 TRBV7-7A0A0K0K1E9 115 aa12.12□□□□□ -0.47
TPM1-228ENST00000560975 FAM240AA0A1B0GVK7 77 aa12.12□□□□□ -0.47
TPM1-228ENST00000560975 MRPS36P82909 103 aaKnown RBP12.12□□□□□ -0.47
TPM1-228ENST00000560975 VSIG2Q96IQ7 327 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms