RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 GATD1Q8NB37 220 aa6.49□□□□□ -1.37
LDLR-211ENST00000560173 TMEM18Q96B42 140 aa6.49□□□□□ -1.37
LDLR-211ENST00000560173 SCRT2Q9NQ03 307 aa6.49□□□□□ -1.37
LDLR-211ENST00000560173 LINC00588Q9Y4M8 146 aa6.49□□□□□ -1.37
LDLR-211ENST00000560173 DNAH17Q9UFH2 4485 aa6.48□□□□□ -1.37
LDLR-211ENST00000560173 ARMS2P0C7Q2 107 aa6.48□□□□□ -1.37
LDLR-211ENST00000560173 SMIM6P0DI80 62 aa6.48□□□□□ -1.37
LDLR-211ENST00000560173 MED14OSP0DP75 135 aa6.48□□□□□ -1.37
LDLR-211ENST00000560173 GATA1P15976 413 aaPredicted RBP6.48□□□□□ -1.37
LDLR-211ENST00000560173 CAMPP49913 170 aa6.48□□□□□ -1.37
LDLR-211ENST00000560173 CACNG7P62955 275 aa6.48□□□□□ -1.37
LDLR-211ENST00000560173 CFAP161Q6P656 301 aa6.48□□□□□ -1.37
LDLR-211ENST00000560173 SMIM15Q7Z3B0 74 aa6.48□□□□□ -1.37
LDLR-211ENST00000560173 BAGE3Q86Y29 109 aa6.48□□□□□ -1.37
LDLR-211ENST00000560173 ZNRF2Q8NHG8 242 aa6.48□□□□□ -1.37
LDLR-211ENST00000560173 PACRGQ96M98 296 aaPredicted RBP6.48□□□□□ -1.37
LDLR-211ENST00000560173 CNFNQ9BYD5 112 aa6.48□□□□□ -1.37
LDLR-211ENST00000560173 ICOSQ9Y6W8 199 aa6.48□□□□□ -1.37
LDLR-211ENST00000560173 CIDEAO60543 219 aa6.47□□□□□ -1.37
LDLR-211ENST00000560173 IGLC6P0CF74 106 aa6.47□□□□□ -1.37
LDLR-211ENST00000560173 ESRGQ1W209 222 aa6.47□□□□□ -1.37
LDLR-211ENST00000560173 HIST3H2BBQ8N257 126 aa6.47□□□□□ -1.37
LDLR-211ENST00000560173 KIAA1109Q2LD37 5005 aa6.47□□□□□ -1.37
LDLR-211ENST00000560173 IGLV2-18A0A075B6J9 118 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 A8MWV9 139 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 K7EQD1 137 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 NXPH4O95158 308 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 OR5AL1P0C617 328 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 GZMBP10144 247 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 ESDP10768 282 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 GYPEP15421 78 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 MRPL23Q16540 153 aaKnown RBP6.46□□□□□ -1.38
LDLR-211ENST00000560173 UFSP1Q6NVU6 142 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 LYZL1Q6UWQ5 148 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 Q6ZR54 194 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 SYT8Q8NBV8 401 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 UPK3BQ9BT76 320 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 TPPP3Q9BW30 176 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 JPT2Q9H910 190 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 MRPS16Q9Y3D3 137 aaKnown RBP6.46□□□□□ -1.38
LDLR-211ENST00000560173 PHLDA3Q9Y5J5 127 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 FAT2Q9NYQ8 4349 aa6.46□□□□□ -1.38
LDLR-211ENST00000560173 IGHV3-73A0A0B4J1V6 119 aa6.45□□□□□ -1.38
LDLR-211ENST00000560173 LOC100131303A0A0U1RQF7 123 aa6.45□□□□□ -1.38
LDLR-211ENST00000560173 M0R2N4 97 aa6.45□□□□□ -1.38
LDLR-211ENST00000560173 M0R381 172 aa6.45□□□□□ -1.38
LDLR-211ENST00000560173 SNAI2O43623 268 aa6.45□□□□□ -1.38
LDLR-211ENST00000560173 PPBPP02775 128 aa6.45□□□□□ -1.38
LDLR-211ENST00000560173 SRIP30626 198 aa6.45□□□□□ -1.38
LDLR-211ENST00000560173 ZFP2Q6ZN57 461 aa6.45□□□□□ -1.38
LDLR-211ENST00000560173 SLC25A29Q8N8R3 303 aa6.45□□□□□ -1.38
LDLR-211ENST00000560173 OR10AG1Q8NH19 301 aa6.45□□□□□ -1.38
LDLR-211ENST00000560173 SSBP4Q9BWG4 385 aaPredicted RBP6.45□□□□□ -1.38
LDLR-211ENST00000560173 SAMD10Q9BYL1 202 aa6.45□□□□□ -1.38
LDLR-211ENST00000560173 LAMTOR2Q9Y2Q5 125 aa6.45□□□□□ -1.38
LDLR-211ENST00000560173 TRBV6-4A0A1B0GX49 114 aa6.44□□□□□ -1.38
LDLR-211ENST00000560173 RHODO00212 210 aa6.44□□□□□ -1.38
LDLR-211ENST00000560173 RAB4AP20338 218 aa6.44□□□□□ -1.38
LDLR-211ENST00000560173 PMCHP20382 165 aa6.44□□□□□ -1.38
LDLR-211ENST00000560173 RHOHQ15669 191 aa6.44□□□□□ -1.38
LDLR-211ENST00000560173 TWIST1Q15672 202 aa6.44□□□□□ -1.38
LDLR-211ENST00000560173 Q6ZSN1 163 aa6.44□□□□□ -1.38
LDLR-211ENST00000560173 NEGR1Q7Z3B1 354 aa6.44□□□□□ -1.38
LDLR-211ENST00000560173 ALKBH7Q9BT30 221 aaPredicted RBP6.44□□□□□ -1.38
LDLR-211ENST00000560173 TMEM191AQ9H0A3 160 aa6.44□□□□□ -1.38
LDLR-211ENST00000560173 NBDYA0A0U1RRE5 68 aa6.43□□□□□ -1.38
LDLR-211ENST00000560173 CRYGDP07320 174 aa6.43□□□□□ -1.38
LDLR-211ENST00000560173 FABP4P15090 132 aa6.43□□□□□ -1.38
LDLR-211ENST00000560173 FAM104BQ5XKR9 115 aa6.43□□□□□ -1.38
LDLR-211ENST00000560173 LYPD5Q6UWN5 251 aa6.43□□□□□ -1.38
LDLR-211ENST00000560173 LINC00518Q8N0U6 118 aa6.43□□□□□ -1.38
LDLR-211ENST00000560173 ORMDL3Q8N138 153 aa6.43□□□□□ -1.38
LDLR-211ENST00000560173 CHCHD1Q96BP2 118 aaKnown RBP6.43□□□□□ -1.38
LDLR-211ENST00000560173 HIST1H2BLQ99880 126 aa6.43□□□□□ -1.38
LDLR-211ENST00000560173 PRADC1Q9BSG0 188 aa6.43□□□□□ -1.38
LDLR-211ENST00000560173 A0A087WWL8 130 aa6.42□□□□□ -1.38
LDLR-211ENST00000560173 MUC21A0A0G2JKD1 596 aa6.42□□□□□ -1.38
LDLR-211ENST00000560173 MUC21A0A140T8X8 626 aa6.42□□□□□ -1.38
LDLR-211ENST00000560173 LINC00694P0DN24 101 aa6.42□□□□□ -1.38
LDLR-211ENST00000560173 NTF3P20783 257 aa6.42□□□□□ -1.38
LDLR-211ENST00000560173 TIRAPP58753 221 aa6.42□□□□□ -1.38
LDLR-211ENST00000560173 KIAA1644Q3SXP7 199 aa6.42□□□□□ -1.38
LDLR-211ENST00000560173 FAM74A4Q5TZK3 123 aa6.42□□□□□ -1.38
LDLR-211ENST00000560173 SPANXN1Q5VSR9 72 aa6.42□□□□□ -1.38
LDLR-211ENST00000560173 SH2D6Q7Z4S9 175 aa6.42□□□□□ -1.38
LDLR-211ENST00000560173 C14orf178Q8N769 122 aaPredicted RBP6.42□□□□□ -1.38
LDLR-211ENST00000560173 OR10D4PQ8NGN7 298 aa6.42□□□□□ -1.38
LDLR-211ENST00000560173 C18orf32Q8TCD1 76 aa6.42□□□□□ -1.38
LDLR-211ENST00000560173 Q9H8V8 135 aa6.42□□□□□ -1.38
LDLR-211ENST00000560173 RTL8CO15255 209 aa6.41□□□□□ -1.38
LDLR-211ENST00000560173 HSBP1O75506 76 aa6.41□□□□□ -1.38
LDLR-211ENST00000560173 SERF1AO75920 110 aa6.41□□□□□ -1.38
LDLR-211ENST00000560173 PPP1R17O96001 155 aa6.41□□□□□ -1.38
LDLR-211ENST00000560173 PDZD11Q5EBL8 140 aa6.41□□□□□ -1.38
LDLR-211ENST00000560173 TTC32Q5I0X7 151 aa6.41□□□□□ -1.38
LDLR-211ENST00000560173 C12orf57Q99622 126 aa6.41□□□□□ -1.38
LDLR-211ENST00000560173 KRTAP1-5Q9BYS1 174 aa6.41□□□□□ -1.38
LDLR-211ENST00000560173 IFITM10A6NMD0 228 aa6.4□□□□□ -1.38
LDLR-211ENST00000560173 SIVA1O15304 175 aa6.4□□□□□ -1.38
LDLR-211ENST00000560173 CKS2P33552 79 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms