RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 SRSF2Q01130 221 aaKnown RBP8.51□□□□□ -1.05
LDLR-208ENST00000558518 MINOS1Q5TGZ0 78 aa8.51□□□□□ -1.05
LDLR-208ENST00000558518 HIST2H2BDQ6DRA6 164 aa8.51□□□□□ -1.05
LDLR-208ENST00000558518 GPHB5Q86YW7 130 aa8.51□□□□□ -1.05
LDLR-208ENST00000558518 Q8N1Y9 231 aa8.51□□□□□ -1.05
LDLR-208ENST00000558518 ZANQ9Y493 2812 aa8.51□□□□□ -1.05
LDLR-208ENST00000558518 ZFYVE26Q68DK2 2539 aa8.51□□□□□ -1.05
LDLR-208ENST00000558518 OVOL1O14753 267 aa8.5□□□□□ -1.05
LDLR-208ENST00000558518 ITPR1Q14643 2758 aa8.5□□□□□ -1.05
LDLR-208ENST00000558518 ABCA12Q86UK0 2595 aa8.5□□□□□ -1.05
LDLR-208ENST00000558518 LINC01546A6NGU7 62 aa8.5□□□□□ -1.05
LDLR-208ENST00000558518 H3BUX3 64 aa8.5□□□□□ -1.05
LDLR-208ENST00000558518 Q8N6K4 173 aa8.5□□□□□ -1.05
LDLR-208ENST00000558518 MINOS1-NBL1R4GNA1 71 aa8.5□□□□□ -1.05
LDLR-208ENST00000558518 COX6B1P14854 86 aa8.5□□□□□ -1.05
LDLR-208ENST00000558518 PROK1P58294 105 aa8.5□□□□□ -1.05
LDLR-208ENST00000558518 UBE2D3P61077 147 aa8.5□□□□□ -1.05
LDLR-208ENST00000558518 UBE2D2P62837 147 aa8.5□□□□□ -1.05
LDLR-208ENST00000558518 RS1O15537 224 aa8.49□□□□□ -1.05
LDLR-208ENST00000558518 GAGE5Q13069 117 aa8.49□□□□□ -1.05
LDLR-208ENST00000558518 GAGE6Q13070 117 aa8.49□□□□□ -1.05
LDLR-208ENST00000558518 SLC25A29Q8N8R3 303 aa8.49□□□□□ -1.05
LDLR-208ENST00000558518 IGHV3-16A0A0C4DH30 117 aa8.49□□□□□ -1.05
LDLR-208ENST00000558518 A0A1W2PPR1 153 aa8.49□□□□□ -1.05
LDLR-208ENST00000558518 TMEM262E9PQX1 116 aa8.49□□□□□ -1.05
LDLR-208ENST00000558518 VPS13CQ709C8 3753 aa8.49□□□□□ -1.05
LDLR-208ENST00000558518 IGHV3OR16-12A0A075B7B8 117 aa8.48□□□□□ -1.05
LDLR-208ENST00000558518 PAPPA-AS1Q5QFB9 102 aa8.48□□□□□ -1.05
LDLR-208ENST00000558518 UBE2E1P51965 193 aa8.48□□□□□ -1.05
LDLR-208ENST00000558518 LINC01620Q4KN68 170 aa8.48□□□□□ -1.05
LDLR-208ENST00000558518 EPG5Q9HCE0 2579 aa8.48□□□□□ -1.05
LDLR-208ENST00000558518 IGHV3-33P01772 117 aa8.48□□□□□ -1.05
LDLR-208ENST00000558518 C10orf99Q6UWK7 81 aa8.48□□□□□ -1.05
LDLR-208ENST00000558518 C5orf56Q8N8D9 126 aa8.48□□□□□ -1.05
LDLR-208ENST00000558518 TIMM21Q9BVV7 248 aa8.48□□□□□ -1.05
LDLR-208ENST00000558518 IGIPA6NJ69 53 aa8.47□□□□□ -1.05
LDLR-208ENST00000558518 RNF223E7ERA6 249 aa8.47□□□□□ -1.05
LDLR-208ENST00000558518 ATXN8Q156A1 80 aa8.47□□□□□ -1.05
LDLR-208ENST00000558518 KHDC1LQ5JSQ8 128 aa8.47□□□□□ -1.05
LDLR-208ENST00000558518 ATP6V0E2Q8NHE4 81 aa8.47□□□□□ -1.05
LDLR-208ENST00000558518 SIRPDQ9H106 197 aa8.47□□□□□ -1.05
LDLR-208ENST00000558518 TRIAP1O43715 76 aa8.47□□□□□ -1.05
LDLR-208ENST00000558518 PPP1R17O96001 155 aa8.47□□□□□ -1.05
LDLR-208ENST00000558518 TMEM190Q8WZ59 177 aa8.47□□□□□ -1.05
LDLR-208ENST00000558518 CELSR2Q9HCU4 2923 aa8.47□□□□□ -1.05
LDLR-208ENST00000558518 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.47□□□□□ -1.05
LDLR-208ENST00000558518 IGKV2-29A2NJV5 120 aaPredicted RBP8.47□□□□□ -1.05
LDLR-208ENST00000558518 H3BMM0 161 aa8.47□□□□□ -1.05
LDLR-208ENST00000558518 UBE2WQ96B02 151 aa8.47□□□□□ -1.05
LDLR-208ENST00000558518 LRRK2Q5S007 2527 aa8.46□□□□□ -1.05
LDLR-208ENST00000558518 IGKV3OR2-268A0A0C4DH90 116 aa8.46□□□□□ -1.05
LDLR-208ENST00000558518 IFITM1P13164 125 aa8.46□□□□□ -1.05
LDLR-208ENST00000558518 SYNJ2BPP57105 145 aa8.46□□□□□ -1.05
LDLR-208ENST00000558518 IGF2-ASQ6U949 168 aa8.46□□□□□ -1.05
LDLR-208ENST00000558518 MOB4Q9Y3A3 225 aa8.46□□□□□ -1.05
LDLR-208ENST00000558518 IGHV4-38-2P0DP08 117 aa8.46□□□□□ -1.06
LDLR-208ENST00000558518 NDUFV3P56181 108 aaKnown RBP8.46□□□□□ -1.06
LDLR-208ENST00000558518 DGAT2L7PQ6IED9 249 aa8.46□□□□□ -1.06
LDLR-208ENST00000558518 PIEZO1Q92508 2521 aa8.46□□□□□ -1.06
LDLR-208ENST00000558518 IGHV4-4A0A075B6R2 117 aa8.46□□□□□ -1.06
LDLR-208ENST00000558518 M0R2P5 195 aa8.46□□□□□ -1.06
LDLR-208ENST00000558518 CHCHD5Q9BSY4 110 aa8.46□□□□□ -1.06
LDLR-208ENST00000558518 Q9UF83 564 aa8.46□□□□□ -1.06
LDLR-208ENST00000558518 GAGE12JA6NER3 117 aa8.45□□□□□ -1.06
LDLR-208ENST00000558518 GAGE7O76087 117 aa8.45□□□□□ -1.06
LDLR-208ENST00000558518 COX6CP09669 75 aa8.45□□□□□ -1.06
LDLR-208ENST00000558518 GAGE12FP0CL80 117 aa8.45□□□□□ -1.06
LDLR-208ENST00000558518 GAGE12GP0CL81 117 aa8.45□□□□□ -1.06
LDLR-208ENST00000558518 GAGE12IP0CL82 117 aa8.45□□□□□ -1.06
LDLR-208ENST00000558518 GAGE4Q13068 117 aa8.45□□□□□ -1.06
LDLR-208ENST00000558518 OOSP1A8MZH6 123 aa8.45□□□□□ -1.06
LDLR-208ENST00000558518 ZNF22P17026 224 aaPredicted RBP8.45□□□□□ -1.06
LDLR-208ENST00000558518 ID1P41134 155 aa8.45□□□□□ -1.06
LDLR-208ENST00000558518 ITLN2Q8WWU7 325 aaPredicted RBP8.45□□□□□ -1.06
LDLR-208ENST00000558518 NDUFA12Q9UI09 145 aa8.45□□□□□ -1.06
LDLR-208ENST00000558518 RHODO00212 210 aa8.44□□□□□ -1.06
LDLR-208ENST00000558518 IGHV3-30-3P0DP02 117 aa8.44□□□□□ -1.06
LDLR-208ENST00000558518 UTP20O75691 2785 aaKnown RBP8.44□□□□□ -1.06
LDLR-208ENST00000558518 ABCA2Q9BZC7 2435 aa8.44□□□□□ -1.06
LDLR-208ENST00000558518 EIF4EBP3O60516 100 aaPredicted RBP8.44□□□□□ -1.06
LDLR-208ENST00000558518 POLR2KP53803 58 aaKnown RBP8.44□□□□□ -1.06
LDLR-208ENST00000558518 HERV-K104P63124 156 aa8.44□□□□□ -1.06
LDLR-208ENST00000558518 ADORA2A-AS1P86434 159 aa8.44□□□□□ -1.06
LDLR-208ENST00000558518 TMEM141Q96I45 108 aa8.44□□□□□ -1.06
LDLR-208ENST00000558518 MAPK1IP1LQ8NDC0 245 aa8.44□□□□□ -1.06
LDLR-208ENST00000558518 DAZ1Q9NQZ3 744 aaKnown RBP8.44□□□□□ -1.06
LDLR-208ENST00000558518 TNFRSF18Q9Y5U5 241 aa8.44□□□□□ -1.06
LDLR-208ENST00000558518 A0A0J9YXY3 114 aa8.43□□□□□ -1.06
LDLR-208ENST00000558518 LY6DQ14210 128 aa8.43□□□□□ -1.06
LDLR-208ENST00000558518 EBI3Q14213 229 aa8.43□□□□□ -1.06
LDLR-208ENST00000558518 MEIG1Q5JSS6 88 aa8.43□□□□□ -1.06
LDLR-208ENST00000558518 MRPL53Q96EL3 112 aaKnown RBP8.43□□□□□ -1.06
LDLR-208ENST00000558518 RPL13AP40429 203 aaKnown RBP8.43□□□□□ -1.06
LDLR-208ENST00000558518 ADAMTSL4-AS1Q5T5F5 129 aa8.43□□□□□ -1.06
LDLR-208ENST00000558518 LEPROTO15243 131 aa8.43□□□□□ -1.06
LDLR-208ENST00000558518 TMEM263Q8WUH6 116 aaKnown RBP8.43□□□□□ -1.06
LDLR-208ENST00000558518 NDUFA4O00483 81 aa8.42□□□□□ -1.06
LDLR-208ENST00000558518 LINC00315P59091 139 aa8.42□□□□□ -1.06
LDLR-208ENST00000558518 MTORP42345 2549 aa8.42□□□□□ -1.06
LDLR-208ENST00000558518 FLNCQ14315 2725 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms