RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 KNCNA6PVL3 124 aa9.52□□□□□ -0.89
LDLR-207ENST00000558013 C9orf85Q96MD7 179 aa9.52□□□□□ -0.89
LDLR-207ENST00000558013 APOMO95445 188 aa9.52□□□□□ -0.89
LDLR-207ENST00000558013 HOXD3P31249 432 aaPredicted RBP9.52□□□□□ -0.89
LDLR-207ENST00000558013 INSL3P51460 131 aa9.52□□□□□ -0.89
LDLR-207ENST00000558013 SNRPD3P62318 126 aaKnown RBP9.52□□□□□ -0.89
LDLR-207ENST00000558013 PMVKQ15126 192 aa9.52□□□□□ -0.89
LDLR-207ENST00000558013 ZNF876PQ49A33 203 aa9.52□□□□□ -0.89
LDLR-207ENST00000558013 LINC01549A6NIU2 74 aa9.51□□□□□ -0.89
LDLR-207ENST00000558013 ZNF580Q9UK33 172 aa9.51□□□□□ -0.89
LDLR-207ENST00000558013 TRBV27A0A0K0K1C4 114 aa9.51□□□□□ -0.89
LDLR-207ENST00000558013 HOXA3O43365 443 aaPredicted RBP9.51□□□□□ -0.89
LDLR-207ENST00000558013 PPP1R17O96001 155 aa9.51□□□□□ -0.89
LDLR-207ENST00000558013 NACAE9PAV3 2078 aa9.51□□□□□ -0.89
LDLR-207ENST00000558013 IGHV1OR15-1A0A075B7D0 117 aa9.51□□□□□ -0.89
LDLR-207ENST00000558013 LGALS9O00182 355 aa9.51□□□□□ -0.89
LDLR-207ENST00000558013 SLURP1P55000 103 aa9.5□□□□□ -0.89
LDLR-207ENST00000558013 MRPL16Q9NX20 251 aaKnown RBP9.5□□□□□ -0.89
LDLR-207ENST00000558013 SPANXB1Q9NS25 103 aaPredicted RBP9.5□□□□□ -0.89
LDLR-207ENST00000558013 A0A096LNT2 108 aa9.49□□□□□ -0.89
LDLR-207ENST00000558013 A0A0J9YY99 117 aa9.49□□□□□ -0.89
LDLR-207ENST00000558013 A0A1B0GWB2 263 aa9.49□□□□□ -0.89
LDLR-207ENST00000558013 KRTAP10-9P60411 292 aa9.49□□□□□ -0.89
LDLR-207ENST00000558013 CEMP1Q6PRD7 247 aaPredicted RBP9.49□□□□□ -0.89
LDLR-207ENST00000558013 LINC01356Q8N9X3 169 aa9.49□□□□□ -0.89
LDLR-207ENST00000558013 ITPR3Q14573 2671 aa9.49□□□□□ -0.89
LDLR-207ENST00000558013 RNASE13Q5GAN3 156 aaKnown RBP9.49□□□□□ -0.89
LDLR-207ENST00000558013 MTORP42345 2549 aa9.49□□□□□ -0.89
LDLR-207ENST00000558013 LOC107984156A0A0G2JMH3 177 aa9.48□□□□□ -0.89
LDLR-207ENST00000558013 TCTEX1D4Q5JR98 221 aa9.48□□□□□ -0.89
LDLR-207ENST00000558013 ARL17AQ8IVW1 177 aa9.48□□□□□ -0.89
LDLR-207ENST00000558013 PRO0461Q9UI25 63 aa9.48□□□□□ -0.89
LDLR-207ENST00000558013 ACANP16112 2415 aa9.48□□□□□ -0.89
LDLR-207ENST00000558013 SETXQ7Z333 2677 aaKnown RBP9.48□□□□□ -0.89
LDLR-207ENST00000558013 GAGE13Q4V321 117 aa9.47□□□□□ -0.89
LDLR-207ENST00000558013 AMELXQ99217 191 aa9.47□□□□□ -0.89
LDLR-207ENST00000558013 ZNF702PQ9H963 129 aa9.47□□□□□ -0.89
LDLR-207ENST00000558013 TSPAN13O95857 204 aa9.47□□□□□ -0.89
LDLR-207ENST00000558013 DEFB131AP59861 70 aa9.47□□□□□ -0.89
LDLR-207ENST00000558013 RPL32P62910 135 aaKnown RBP9.47□□□□□ -0.89
LDLR-207ENST00000558013 TIMM17AQ99595 171 aa9.47□□□□□ -0.89
LDLR-207ENST00000558013 FLNAP21333 2647 aaKnown RBP9.47□□□□□ -0.89
LDLR-207ENST00000558013 A0A0J9YXV3 536 aa9.47□□□□□ -0.89
LDLR-207ENST00000558013 F8W1H4 67 aa9.47□□□□□ -0.89
LDLR-207ENST00000558013 SPAG8Q99932 426 aaPredicted RBP9.47□□□□□ -0.89
LDLR-207ENST00000558013 GTSF1LQ9H1H1 148 aa9.47□□□□□ -0.89
LDLR-207ENST00000558013 TRBV6-5A0A0K0K1A5 114 aa9.46□□□□□ -0.89
LDLR-207ENST00000558013 ADARB2-AS1A8MUL3 147 aa9.46□□□□□ -0.89
LDLR-207ENST00000558013 UBE2D1P51668 147 aa9.46□□□□□ -0.89
LDLR-207ENST00000558013 TMEM141Q96I45 108 aa9.46□□□□□ -0.89
LDLR-207ENST00000558013 VPREB3Q9UKI3 123 aa9.46□□□□□ -0.89
LDLR-207ENST00000558013 TSSC4Q9Y5U2 329 aaPredicted RBP9.46□□□□□ -0.89
LDLR-207ENST00000558013 RBMY1BA6NDE4 496 aaKnown RBP9.46□□□□□ -0.9
LDLR-207ENST00000558013 RBMY1EA6NEQ0 496 aaKnown RBP9.46□□□□□ -0.9
LDLR-207ENST00000558013 LINC01619G3V211 115 aa9.46□□□□□ -0.9
LDLR-207ENST00000558013 RBMY1DP0C7P1 496 aaKnown RBP9.46□□□□□ -0.9
LDLR-207ENST00000558013 Q6ZSN1 163 aa9.46□□□□□ -0.9
LDLR-207ENST00000558013 SYT8Q8NBV8 401 aa9.46□□□□□ -0.9
LDLR-207ENST00000558013 J3QQQ9 107 aa9.45□□□□□ -0.9
LDLR-207ENST00000558013 SMCPP49901 116 aaPredicted RBP9.45□□□□□ -0.9
LDLR-207ENST00000558013 PTH2Q96A98 100 aa9.45□□□□□ -0.9
LDLR-207ENST00000558013 GATA3P23771 443 aa9.45□□□□□ -0.9
LDLR-207ENST00000558013 PSMB2P49721 201 aa9.45□□□□□ -0.9
LDLR-207ENST00000558013 IGHV3-30P01768 117 aa9.45□□□□□ -0.9
LDLR-207ENST00000558013 CFC1BP0CG36 223 aa9.45□□□□□ -0.9
LDLR-207ENST00000558013 CFC1P0CG37 223 aa9.45□□□□□ -0.9
LDLR-207ENST00000558013 IGHV3-30-5P0DP03 117 aa9.45□□□□□ -0.9
LDLR-207ENST00000558013 HERVK_113P61574 105 aa9.45□□□□□ -0.9
LDLR-207ENST00000558013 C20orf203Q8NBC4 194 aa9.45□□□□□ -0.9
LDLR-207ENST00000558013 TRPT1Q86TN4 253 aaKnown RBP9.44□□□□□ -0.9
LDLR-207ENST00000558013 NDUFA11Q86Y39 141 aa9.44□□□□□ -0.9
LDLR-207ENST00000558013 ZNF418Q8TF45 676 aaPredicted RBP9.44□□□□□ -0.9
LDLR-207ENST00000558013 FAM104AQ969W3 186 aa9.44□□□□□ -0.9
LDLR-207ENST00000558013 KHDC1LQ5JSQ8 128 aa9.44□□□□□ -0.9
LDLR-207ENST00000558013 ODF3Q96PU9 254 aa9.44□□□□□ -0.9
LDLR-207ENST00000558013 EIF4EBP3O60516 100 aaPredicted RBP9.43□□□□□ -0.9
LDLR-207ENST00000558013 TMEM61Q8N0U2 210 aa9.43□□□□□ -0.9
LDLR-207ENST00000558013 IGLV4-3A0A075B6K6 122 aa9.43□□□□□ -0.9
LDLR-207ENST00000558013 Q6YL49 198 aa9.43□□□□□ -0.9
LDLR-207ENST00000558013 SLC25A29Q8N8R3 303 aa9.43□□□□□ -0.9
LDLR-207ENST00000558013 UBE2E2Q96LR5 201 aa9.43□□□□□ -0.9
LDLR-207ENST00000558013 BBC3Q96PG8 261 aaPredicted RBP9.43□□□□□ -0.9
LDLR-207ENST00000558013 A8MZ25 164 aa9.42□□□□□ -0.9
LDLR-207ENST00000558013 I3L3M4 83 aa9.42□□□□□ -0.9
LDLR-207ENST00000558013 ZNF22P17026 224 aaPredicted RBP9.42□□□□□ -0.9
LDLR-207ENST00000558013 NSUN5P1Q3KNT7 163 aa9.42□□□□□ -0.9
LDLR-207ENST00000558013 SAMD13Q5VXD3 122 aa9.42□□□□□ -0.9
LDLR-207ENST00000558013 SPXQ9BT56 116 aa9.42□□□□□ -0.9
LDLR-207ENST00000558013 H7C2G1 150 aa9.42□□□□□ -0.9
LDLR-207ENST00000558013 LGALS3P17931 250 aaKnown RBP9.42□□□□□ -0.9
LDLR-207ENST00000558013 SMAGPQ0VAQ4 97 aa9.42□□□□□ -0.9
LDLR-207ENST00000558013 PAPPA-AS1Q5QFB9 102 aa9.42□□□□□ -0.9
LDLR-207ENST00000558013 C11orf44Q8N8P7 122 aa9.42□□□□□ -0.9
LDLR-207ENST00000558013 RAX2Q96IS3 184 aa9.42□□□□□ -0.9
LDLR-207ENST00000558013 TRAV8-3A0A0A6YYJ7 113 aa9.42□□□□□ -0.9
LDLR-207ENST00000558013 IGHV3-38A0A0C4DH36 116 aa9.42□□□□□ -0.9
LDLR-207ENST00000558013 IGHV4-31P0DP07 118 aa9.42□□□□□ -0.9
LDLR-207ENST00000558013 TMEM238LA0A1B0GVL6 79 aa9.41□□□□□ -0.9
LDLR-207ENST00000558013 TMEM223A0PJW6 202 aa9.41□□□□□ -0.9
LDLR-207ENST00000558013 A6NJY4 79 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms