RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 PCP2Q8IVA1 136 aa8.17□□□□□ -1.1
ACTN1-216ENST00000556083 Q8NA96 180 aa8.17□□□□□ -1.1
ACTN1-216ENST00000556083 TRBV6-4A0A1B0GX49 114 aa8.17□□□□□ -1.1
ACTN1-216ENST00000556083 GTSF1Q8WW33 167 aa8.17□□□□□ -1.1
ACTN1-216ENST00000556083 DOCK11Q5JSL3 2073 aa8.16□□□□□ -1.1
ACTN1-216ENST00000556083 NDUFC2O95298 119 aa8.16□□□□□ -1.1
ACTN1-216ENST00000556083 IGHV3-30P01768 117 aa8.16□□□□□ -1.1
ACTN1-216ENST00000556083 IGHV3-33P01772 117 aa8.16□□□□□ -1.1
ACTN1-216ENST00000556083 IGHV3-30-3P0DP02 117 aa8.16□□□□□ -1.1
ACTN1-216ENST00000556083 IGHV3-30-5P0DP03 117 aa8.16□□□□□ -1.1
ACTN1-216ENST00000556083 MRAPQ8TCY5 172 aa8.16□□□□□ -1.1
ACTN1-216ENST00000556083 IBA57-AS1B1ANH7 110 aa8.16□□□□□ -1.1
ACTN1-216ENST00000556083 ODF1Q14990 250 aa8.16□□□□□ -1.1
ACTN1-216ENST00000556083 MIAQ16674 131 aa8.16□□□□□ -1.1
ACTN1-216ENST00000556083 HIST2H2BDQ6DRA6 164 aa8.16□□□□□ -1.1
ACTN1-216ENST00000556083 PCNX1Q96RV3 2341 aa8.16□□□□□ -1.1
ACTN1-216ENST00000556083 NCKAP5O14513 1909 aa8.16□□□□□ -1.1
ACTN1-216ENST00000556083 A0A1B0GXF2 115 aa8.15□□□□□ -1.1
ACTN1-216ENST00000556083 RNASE13Q5GAN3 156 aaKnown RBP8.15□□□□□ -1.1
ACTN1-216ENST00000556083 LINC00643Q86TS7 51 aa8.15□□□□□ -1.1
ACTN1-216ENST00000556083 TRAV26-1A0A087WT03 109 aa8.15□□□□□ -1.1
ACTN1-216ENST00000556083 SVIPQ8NHG7 77 aa8.15□□□□□ -1.1
ACTN1-216ENST00000556083 IGLC6P0CF74 106 aa8.15□□□□□ -1.1
ACTN1-216ENST00000556083 DEFB135Q30KP9 77 aa8.15□□□□□ -1.1
ACTN1-216ENST00000556083 TNRC6AQ8NDV7 1962 aaKnown RBP8.15□□□□□ -1.11
ACTN1-216ENST00000556083 KLK12Q9UKR0 248 aa8.15□□□□□ -1.11
ACTN1-216ENST00000556083 GATA1P15976 413 aaPredicted RBP8.14□□□□□ -1.11
ACTN1-216ENST00000556083 ANKRD39Q53RE8 183 aa8.14□□□□□ -1.11
ACTN1-216ENST00000556083 ACACBO00763 2458 aa8.14□□□□□ -1.11
ACTN1-216ENST00000556083 IGLV2-14P01704 120 aa8.14□□□□□ -1.11
ACTN1-216ENST00000556083 SEC61GP60059 68 aa8.14□□□□□ -1.11
ACTN1-216ENST00000556083 DEFB105AQ8NG35 78 aa8.14□□□□□ -1.11
ACTN1-216ENST00000556083 PYGO1Q9Y3Y4 419 aa8.14□□□□□ -1.11
ACTN1-216ENST00000556083 DEFB114Q30KQ6 69 aa8.14□□□□□ -1.11
ACTN1-216ENST00000556083 SPRNQ5BIV9 151 aa8.14□□□□□ -1.11
ACTN1-216ENST00000556083 ZFAND2AQ8N6M9 145 aa8.14□□□□□ -1.11
ACTN1-216ENST00000556083 K7ERJ3 54 aa8.14□□□□□ -1.11
ACTN1-216ENST00000556083 FAM222AQ5U5X8 452 aa8.14□□□□□ -1.11
ACTN1-216ENST00000556083 PIEZO1Q92508 2521 aa8.13□□□□□ -1.11
ACTN1-216ENST00000556083 TRBV6-5A0A0K0K1A5 114 aa8.13□□□□□ -1.11
ACTN1-216ENST00000556083 PRAC2D3DTV9 90 aa8.13□□□□□ -1.11
ACTN1-216ENST00000556083 TIMM17BO60830 172 aa8.13□□□□□ -1.11
ACTN1-216ENST00000556083 PROP1O75360 226 aa8.13□□□□□ -1.11
ACTN1-216ENST00000556083 TRBV12-3P01733 135 aa8.13□□□□□ -1.11
ACTN1-216ENST00000556083 SPANXB1Q9NS25 103 aaPredicted RBP8.13□□□□□ -1.11
ACTN1-216ENST00000556083 MSRB1Q9NZV6 116 aa8.13□□□□□ -1.11
ACTN1-216ENST00000556083 HIVEP2P31629 2446 aa8.13□□□□□ -1.11
ACTN1-216ENST00000556083 IGHV4-31P0DP07 118 aa8.13□□□□□ -1.11
ACTN1-216ENST00000556083 MIR7-3HGQ8N6C7 128 aa8.13□□□□□ -1.11
ACTN1-216ENST00000556083 RITA1Q96K30 269 aa8.13□□□□□ -1.11
ACTN1-216ENST00000556083 CCDC140Q96MF4 163 aa8.13□□□□□ -1.11
ACTN1-216ENST00000556083 PLXND1Q9Y4D7 1925 aa8.13□□□□□ -1.11
ACTN1-216ENST00000556083 PSMG3-AS1Q96PY0 264 aa8.12□□□□□ -1.11
ACTN1-216ENST00000556083 MLST8Q9BVC4 326 aa8.12□□□□□ -1.11
ACTN1-216ENST00000556083 ZNF706Q9Y5V0 76 aaPredicted RBP8.12□□□□□ -1.11
ACTN1-216ENST00000556083 MED13Q9UHV7 2174 aa8.12□□□□□ -1.11
ACTN1-216ENST00000556083 DENND4AQ7Z401 1863 aa8.12□□□□□ -1.11
ACTN1-216ENST00000556083 GOLGB1Q14789 3259 aaKnown RBP8.12□□□□□ -1.11
ACTN1-216ENST00000556083 IGKV1D-37A0A075B6S9 117 aa8.12□□□□□ -1.11
ACTN1-216ENST00000556083 LECT2O14960 151 aa8.12□□□□□ -1.11
ACTN1-216ENST00000556083 CRYGBP07316 175 aa8.12□□□□□ -1.11
ACTN1-216ENST00000556083 FAM208BQ5VWN6 2430 aa8.12□□□□□ -1.11
ACTN1-216ENST00000556083 PTPRQQ9UMZ3 2332 aa8.12□□□□□ -1.11
ACTN1-216ENST00000556083 ZFHX2Q9C0A1 2572 aaPredicted RBP8.12□□□□□ -1.11
ACTN1-216ENST00000556083 IGLV10-54A0A075B6I4 117 aa8.12□□□□□ -1.11
ACTN1-216ENST00000556083 SS18L2Q9UHA2 77 aa8.11□□□□□ -1.11
ACTN1-216ENST00000556083 TRAV10A0A0B4J240 114 aa8.11□□□□□ -1.11
ACTN1-216ENST00000556083 KMT2EQ8IZD2 1858 aa8.11□□□□□ -1.11
ACTN1-216ENST00000556083 REG3AQ06141 175 aa8.11□□□□□ -1.11
ACTN1-216ENST00000556083 LINC00322Q6ZN03 302 aaPredicted RBP8.11□□□□□ -1.11
ACTN1-216ENST00000556083 ANKHD1Q8IWZ3 2542 aaKnown RBP8.11□□□□□ -1.11
ACTN1-216ENST00000556083 LY6LH3BQJ8 138 aa8.11□□□□□ -1.11
ACTN1-216ENST00000556083 A0A1W2PNU3 283 aaPredicted RBP8.1□□□□□ -1.11
ACTN1-216ENST00000556083 RNF183Q96D59 192 aa8.1□□□□□ -1.11
ACTN1-216ENST00000556083 CHCHD7Q9BUK0 85 aa8.1□□□□□ -1.11
ACTN1-216ENST00000556083 RPL39P62891 51 aaKnown RBP8.1□□□□□ -1.11
ACTN1-216ENST00000556083 UNQ9165/PRO28630Q6UXU0 137 aa8.1□□□□□ -1.11
ACTN1-216ENST00000556083 FOXI1Q12951 378 aa8.09□□□□□ -1.11
ACTN1-216ENST00000556083 SHANK1Q9Y566 2161 aa8.09□□□□□ -1.11
ACTN1-216ENST00000556083 RS1O15537 224 aa8.09□□□□□ -1.11
ACTN1-216ENST00000556083 CLUHP3Q96NS8 147 aa8.09□□□□□ -1.11
ACTN1-216ENST00000556083 ZNF580Q9UK33 172 aa8.09□□□□□ -1.11
ACTN1-216ENST00000556083 C11orf71Q6IPW1 123 aa8.09□□□□□ -1.11
ACTN1-216ENST00000556083 PRO3102Q9H379 93 aa8.09□□□□□ -1.11
ACTN1-216ENST00000556083 NOTCH4Q99466 2003 aa8.09□□□□□ -1.11
ACTN1-216ENST00000556083 TDRG1Q3Y452 100 aa8.09□□□□□ -1.11
ACTN1-216ENST00000556083 J3KT08 172 aa8.08□□□□□ -1.12
ACTN1-216ENST00000556083 C7orf33Q8WU49 177 aa8.08□□□□□ -1.12
ACTN1-216ENST00000556083 UPK3BQ9BT76 320 aa8.08□□□□□ -1.12
ACTN1-216ENST00000556083 BPY2O14599 106 aa8.08□□□□□ -1.12
ACTN1-216ENST00000556083 LINC00474Q9P2X8 69 aa8.08□□□□□ -1.12
ACTN1-216ENST00000556083 EIF4EBP1Q13541 118 aaPredicted RBP8.08□□□□□ -1.12
ACTN1-216ENST00000556083 FXYD2P54710 66 aa8.07□□□□□ -1.12
ACTN1-216ENST00000556083 MBD6Q96DN6 1003 aa8.07□□□□□ -1.12
ACTN1-216ENST00000556083 DEFB131BA0A096LNP1 70 aa8.07□□□□□ -1.12
ACTN1-216ENST00000556083 ATP5EP56381 51 aaPredicted RBP8.07□□□□□ -1.12
ACTN1-216ENST00000556083 MSMPQ1L6U9 139 aa8.07□□□□□ -1.12
ACTN1-216ENST00000556083 WFDC9Q8NEX5 89 aa8.07□□□□□ -1.12
ACTN1-216ENST00000556083 TRBV27A0A0K0K1C4 114 aa8.07□□□□□ -1.12
ACTN1-216ENST00000556083 BRI3O95415 125 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms