RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 TMA7Q9Y2S6 64 aaKnown RBP9.22□□□□□ -0.93
SHMT2-219ENST00000555563 C9JQL5 133 aa9.21□□□□□ -0.94
SHMT2-219ENST00000555563 LAGE3Q14657 143 aa9.21□□□□□ -0.94
SHMT2-219ENST00000555563 SUMO4Q6EEV6 95 aa9.21□□□□□ -0.94
SHMT2-219ENST00000555563 WDR73Q6P4I2 378 aa9.21□□□□□ -0.94
SHMT2-219ENST00000555563 PKHD1P08F94 4074 aa9.21□□□□□ -0.94
SHMT2-219ENST00000555563 A0A087WTM6 91 aa9.2□□□□□ -0.94
SHMT2-219ENST00000555563 M0QY20 66 aa9.2□□□□□ -0.94
SHMT2-219ENST00000555563 SRSF3P84103 164 aaKnown RBP9.2□□□□□ -0.94
SHMT2-219ENST00000555563 TWIST1Q15672 202 aa9.2□□□□□ -0.94
SHMT2-219ENST00000555563 CT83Q5H943 113 aa9.2□□□□□ -0.94
SHMT2-219ENST00000555563 DAZ4Q86SG3 579 aaKnown RBP9.2□□□□□ -0.94
SHMT2-219ENST00000555563 NIT1Q86X76 327 aa9.2□□□□□ -0.94
SHMT2-219ENST00000555563 DPH3P1Q9H4G8 78 aa9.2□□□□□ -0.94
SHMT2-219ENST00000555563 DAZ3Q9NR90 486 aaKnown RBP9.2□□□□□ -0.94
SHMT2-219ENST00000555563 TRBV6-8A0A0A6YYG3 113 aa9.19□□□□□ -0.94
SHMT2-219ENST00000555563 A8MWL6 223 aa9.19□□□□□ -0.94
SHMT2-219ENST00000555563 H7C1H1 209 aa9.19□□□□□ -0.94
SHMT2-219ENST00000555563 DYNC1H1Q14204 4646 aaKnown RBP9.19□□□□□ -0.94
SHMT2-219ENST00000555563 EREGO14944 169 aa9.18□□□□□ -0.94
SHMT2-219ENST00000555563 PSCAO43653 123 aa9.18□□□□□ -0.94
SHMT2-219ENST00000555563 FUSP35637 526 aaKnown RBP eCLIP9.18□□□□□ -0.94
SHMT2-219ENST00000555563 PKD1P98161 4303 aa9.18□□□□□ -0.94
SHMT2-219ENST00000555563 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.18□□□□□ -0.94
SHMT2-219ENST00000555563 PGLYRP4Q96LB8 373 aa9.18□□□□□ -0.94
SHMT2-219ENST00000555563 URGCP-MRPS24S4R325 110 aa9.18□□□□□ -0.94
SHMT2-219ENST00000555563 PEA15Q15121 130 aa9.17□□□□□ -0.94
SHMT2-219ENST00000555563 FAM74A3Q4VXF1 159 aa9.17□□□□□ -0.94
SHMT2-219ENST00000555563 RASL11AQ6T310 242 aa9.17□□□□□ -0.94
SHMT2-219ENST00000555563 NTM-AS1Q6ZSK4 140 aa9.17□□□□□ -0.94
SHMT2-219ENST00000555563 ISOC2Q96AB3 205 aa9.17□□□□□ -0.94
SHMT2-219ENST00000555563 DNAJC30Q96LL9 226 aa9.17□□□□□ -0.94
SHMT2-219ENST00000555563 OSTCQ9NRP0 149 aa9.17□□□□□ -0.94
SHMT2-219ENST00000555563 A0A087WX48 190 aa9.16□□□□□ -0.94
SHMT2-219ENST00000555563 TRAV8-3A0A0A6YYJ7 113 aa9.16□□□□□ -0.94
SHMT2-219ENST00000555563 RPL23P62829 140 aaKnown RBP9.16□□□□□ -0.94
SHMT2-219ENST00000555563 TMEM241Q24JQ0 296 aa9.16□□□□□ -0.94
SHMT2-219ENST00000555563 TSKUQ8WUA8 353 aa9.16□□□□□ -0.94
SHMT2-219ENST00000555563 CHCHD7Q9BUK0 85 aa9.16□□□□□ -0.94
SHMT2-219ENST00000555563 V9GYV3 84 aa9.16□□□□□ -0.94
SHMT2-219ENST00000555563 TRAV26-2A0A0B4J265 109 aa9.15□□□□□ -0.94
SHMT2-219ENST00000555563 LRCOL1A6NCL2 159 aa9.15□□□□□ -0.94
SHMT2-219ENST00000555563 HIGD1CA8MV81 97 aa9.15□□□□□ -0.94
SHMT2-219ENST00000555563 FOXA3P55318 350 aaPredicted RBP9.15□□□□□ -0.94
SHMT2-219ENST00000555563 ADIRFQ15847 76 aa9.15□□□□□ -0.94
SHMT2-219ENST00000555563 TMEM97Q5BJF2 176 aa9.15□□□□□ -0.94
SHMT2-219ENST00000555563 KCNIP4Q6PIL6 250 aa9.15□□□□□ -0.94
SHMT2-219ENST00000555563 C15orf54Q8N8G6 183 aa9.15□□□□□ -0.94
SHMT2-219ENST00000555563 CHCHD5Q9BSY4 110 aa9.15□□□□□ -0.94
SHMT2-219ENST00000555563 GFRA4Q9GZZ7 299 aa9.15□□□□□ -0.94
SHMT2-219ENST00000555563 SMDT1Q9H4I9 107 aa9.15□□□□□ -0.94
SHMT2-219ENST00000555563 NAT8Q9UHE5 227 aa9.15□□□□□ -0.94
SHMT2-219ENST00000555563 KLK12Q9UKR0 248 aa9.15□□□□□ -0.94
SHMT2-219ENST00000555563 ABCA13Q86UQ4 5058 aa9.15□□□□□ -0.95
SHMT2-219ENST00000555563 DNAH11Q96DT5 4516 aa9.14□□□□□ -0.95
SHMT2-219ENST00000555563 MPV17L2Q567V2 206 aa9.14□□□□□ -0.95
SHMT2-219ENST00000555563 CDPF1Q6NVV7 123 aa9.14□□□□□ -0.95
SHMT2-219ENST00000555563 SMIM15Q7Z3B0 74 aa9.14□□□□□ -0.95
SHMT2-219ENST00000555563 GATD1Q8NB37 220 aa9.14□□□□□ -0.95
SHMT2-219ENST00000555563 BORCS7Q96B45 105 aa9.14□□□□□ -0.95
SHMT2-219ENST00000555563 TM2D2Q9BX73 214 aa9.14□□□□□ -0.95
SHMT2-219ENST00000555563 NIT2Q9NQR4 276 aa9.14□□□□□ -0.95
SHMT2-219ENST00000555563 TRBV25-1A0A075B6N4 114 aa9.13□□□□□ -0.95
SHMT2-219ENST00000555563 A0A1B0GUT8 65 aa9.13□□□□□ -0.95
SHMT2-219ENST00000555563 TMEM262E9PQX1 116 aa9.13□□□□□ -0.95
SHMT2-219ENST00000555563 IQCJQ1A5X6 159 aa9.13□□□□□ -0.95
SHMT2-219ENST00000555563 UBE2WQ96B02 151 aa9.13□□□□□ -0.95
SHMT2-219ENST00000555563 IGHV1-24A0A0C4DH33 117 aa9.12□□□□□ -0.95
SHMT2-219ENST00000555563 FAM231BA6NCW3 169 aa9.12□□□□□ -0.95
SHMT2-219ENST00000555563 PKIAP61925 76 aa9.12□□□□□ -0.95
SHMT2-219ENST00000555563 GAGE6Q13070 117 aa9.12□□□□□ -0.95
SHMT2-219ENST00000555563 WFDC2Q14508 124 aa9.12□□□□□ -0.95
SHMT2-219ENST00000555563 ELOBQ15370 118 aa9.12□□□□□ -0.95
SHMT2-219ENST00000555563 Q8N976 141 aa9.12□□□□□ -0.95
SHMT2-219ENST00000555563 RPL39LQ96EH5 51 aaKnown RBP9.12□□□□□ -0.95
SHMT2-219ENST00000555563 PGPEP1Q9NXJ5 209 aa9.12□□□□□ -0.95
SHMT2-219ENST00000555563 CDK2AP2O75956 126 aa9.11□□□□□ -0.95
SHMT2-219ENST00000555563 ANGP03950 147 aaKnown RBP9.11□□□□□ -0.95
SHMT2-219ENST00000555563 Q8N814 137 aa9.11□□□□□ -0.95
SHMT2-219ENST00000555563 MAPKAPK5-AS1Q8N8E1 139 aa9.11□□□□□ -0.95
SHMT2-219ENST00000555563 DEFB104AQ8WTQ1 72 aa9.11□□□□□ -0.95
SHMT2-219ENST00000555563 FRZBQ92765 325 aa9.11□□□□□ -0.95
SHMT2-219ENST00000555563 RMI2Q96E14 147 aa9.11□□□□□ -0.95
SHMT2-219ENST00000555563 KRTAP4-5Q9BYR2 181 aa9.11□□□□□ -0.95
SHMT2-219ENST00000555563 IGKV2D-24A0A075B6R9 120 aa9.1□□□□□ -0.95
SHMT2-219ENST00000555563 RAB14P61106 215 aa9.1□□□□□ -0.95
SHMT2-219ENST00000555563 RBX1P62877 108 aa9.1□□□□□ -0.95
SHMT2-219ENST00000555563 ATRAIDQ6UW56 229 aa9.1□□□□□ -0.95
SHMT2-219ENST00000555563 NUP35Q8NFH5 326 aa9.1□□□□□ -0.95
SHMT2-219ENST00000555563 LECT2O14960 151 aa9.09□□□□□ -0.95
SHMT2-219ENST00000555563 CRPP02741 224 aa9.09□□□□□ -0.95
SHMT2-219ENST00000555563 COTL1Q14019 142 aa9.09□□□□□ -0.95
SHMT2-219ENST00000555563 ENHOQ6UWT2 76 aa9.09□□□□□ -0.95
SHMT2-219ENST00000555563 TMEM243Q9BU79 118 aa9.09□□□□□ -0.95
SHMT2-219ENST00000555563 TMEM191AQ9H0A3 160 aa9.09□□□□□ -0.95
SHMT2-219ENST00000555563 NAT8BQ9UHF3 227 aa9.09□□□□□ -0.95
SHMT2-219ENST00000555563 COX11Q9Y6N1 276 aa9.09□□□□□ -0.95
SHMT2-219ENST00000555563 SMIM27A0A1W2PRY6 76 aa9.08□□□□□ -0.96
SHMT2-219ENST00000555563 GAS8-AS1O95177 125 aa9.08□□□□□ -0.96
SHMT2-219ENST00000555563 AMTP48728 403 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms