RNA–Protein interactions for RNA: ENST00000541286.5

SFSWAP-210, Transcript of splicing factor SWAP, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SFSWAP, Length 3,219 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-210ENST00000541286 IGKV3-20P01619 116 aa10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 LGALS1P09382 135 aaKnown RBP10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 TRPT1Q86TN4 253 aaKnown RBP10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 Q8N8P6 123 aa10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 RPL39LQ96EH5 51 aaKnown RBP10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 TRAV41A0A0B4J266 112 aa10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 C20orf173Q96LM9 149 aa10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 PRADC1Q9BSG0 188 aa10.79□□□□□ -0.68
SFSWAP-210ENST00000541286 EBI3Q14213 229 aa10.78□□□□□ -0.68
SFSWAP-210ENST00000541286 A6NDX4 124 aa10.78□□□□□ -0.68
SFSWAP-210ENST00000541286 ATP5LO75964 103 aa10.78□□□□□ -0.68
SFSWAP-210ENST00000541286 ZFAND6Q6FIF0 208 aa10.78□□□□□ -0.68
SFSWAP-210ENST00000541286 Q6YL49 198 aa10.78□□□□□ -0.68
SFSWAP-210ENST00000541286 ANKRD29Q8N6D5 301 aa10.78□□□□□ -0.68
SFSWAP-210ENST00000541286 SCGB3A1Q96QR1 104 aa10.78□□□□□ -0.68
SFSWAP-210ENST00000541286 GNRH2O43555 120 aa10.77□□□□□ -0.68
SFSWAP-210ENST00000541286 A0A087WX48 190 aa10.77□□□□□ -0.69
SFSWAP-210ENST00000541286 TRAV4A0A0B4J268 109 aa10.77□□□□□ -0.69
SFSWAP-210ENST00000541286 IGHV7-4-1A0A0J9YVY3 117 aa10.77□□□□□ -0.69
SFSWAP-210ENST00000541286 OR10J6PQ8NGY7 276 aa10.77□□□□□ -0.69
SFSWAP-210ENST00000541286 IGHV3-64A0A075B6Q5 118 aa10.77□□□□□ -0.69
SFSWAP-210ENST00000541286 GAGE5Q13069 117 aa10.77□□□□□ -0.69
SFSWAP-210ENST00000541286 GAGE6Q13070 117 aa10.77□□□□□ -0.69
SFSWAP-210ENST00000541286 F5H697 171 aa10.76□□□□□ -0.69
SFSWAP-210ENST00000541286 TRBV7-1A0A0A6YYK4 115 aa10.75□□□□□ -0.69
SFSWAP-210ENST00000541286 C9JAW5 83 aa10.75□□□□□ -0.69
SFSWAP-210ENST00000541286 COX8CQ7Z4L0 72 aa10.75□□□□□ -0.69
SFSWAP-210ENST00000541286 C18orf65Q6ZTR6 163 aa10.75□□□□□ -0.69
SFSWAP-210ENST00000541286 NRACQ8N912 160 aa10.75□□□□□ -0.69
SFSWAP-210ENST00000541286 NHLRC4P0CG21 123 aaPredicted RBP10.74□□□□□ -0.69
SFSWAP-210ENST00000541286 CNFNQ9BYD5 112 aa10.74□□□□□ -0.69
SFSWAP-210ENST00000541286 VPREB3Q9UKI3 123 aa10.74□□□□□ -0.69
SFSWAP-210ENST00000541286 MOB4Q9Y3A3 225 aa10.74□□□□□ -0.69
SFSWAP-210ENST00000541286 FAM74A4Q5TZK3 123 aa10.74□□□□□ -0.69
SFSWAP-210ENST00000541286 PPDPFLQ8WWR9 84 aa10.74□□□□□ -0.69
SFSWAP-210ENST00000541286 TMEM190Q8WZ59 177 aa10.74□□□□□ -0.69
SFSWAP-210ENST00000541286 DUX3Q96PT4 197 aa10.74□□□□□ -0.69
SFSWAP-210ENST00000541286 EDN2P20800 178 aa10.73□□□□□ -0.69
SFSWAP-210ENST00000541286 A8MWV9 139 aa10.73□□□□□ -0.69
SFSWAP-210ENST00000541286 H7C1H1 209 aa10.73□□□□□ -0.69
SFSWAP-210ENST00000541286 ZNF688P0C7X2 276 aa10.73□□□□□ -0.69
SFSWAP-210ENST00000541286 ASIPP42127 132 aa10.73□□□□□ -0.69
SFSWAP-210ENST00000541286 JPT2Q9H910 190 aa10.73□□□□□ -0.69
SFSWAP-210ENST00000541286 NOTCH1P46531 2555 aa10.73□□□□□ -0.69
SFSWAP-210ENST00000541286 IGLV2-18A0A075B6J9 118 aa10.73□□□□□ -0.69
SFSWAP-210ENST00000541286 A0A087WWL8 130 aa10.73□□□□□ -0.69
SFSWAP-210ENST00000541286 RBAKDNA6NC62 111 aa10.73□□□□□ -0.69
SFSWAP-210ENST00000541286 TEN1Q86WV5 123 aa10.73□□□□□ -0.69
SFSWAP-210ENST00000541286 SMIM2Q9BVW6 85 aa10.73□□□□□ -0.69
SFSWAP-210ENST00000541286 F8VRH5 84 aa10.72□□□□□ -0.69
SFSWAP-210ENST00000541286 SUMO2P61956 95 aaKnown RBP10.72□□□□□ -0.69
SFSWAP-210ENST00000541286 TTC32Q5I0X7 151 aa10.72□□□□□ -0.69
SFSWAP-210ENST00000541286 TRBV7-9A0A0J9YWB2 115 aa10.71□□□□□ -0.69
SFSWAP-210ENST00000541286 HTN1P15515 57 aa10.71□□□□□ -0.69
SFSWAP-210ENST00000541286 GAGE2BQ13066 116 aa10.71□□□□□ -0.69
SFSWAP-210ENST00000541286 GAGE2EQ4V326 116 aa10.71□□□□□ -0.69
SFSWAP-210ENST00000541286 GAGE2DQ9UEU5 116 aa10.71□□□□□ -0.69
SFSWAP-210ENST00000541286 C9orf47Q6ZRZ4 202 aa10.71□□□□□ -0.69
SFSWAP-210ENST00000541286 TRAV21A0A0B4J279 112 aa10.71□□□□□ -0.7
SFSWAP-210ENST00000541286 A0A1W2PRX2 142 aa10.71□□□□□ -0.7
SFSWAP-210ENST00000541286 PLNP26678 52 aa10.71□□□□□ -0.7
SFSWAP-210ENST00000541286 Q1RN00 199 aa10.7□□□□□ -0.7
SFSWAP-210ENST00000541286 DEFB136Q30KP8 78 aa10.7□□□□□ -0.7
SFSWAP-210ENST00000541286 FAM159AQ6UWV7 190 aa10.7□□□□□ -0.7
SFSWAP-210ENST00000541286 C2orf66Q6UXQ4 117 aa10.7□□□□□ -0.7
SFSWAP-210ENST00000541286 C9orf139Q6ZV77 190 aa10.7□□□□□ -0.7
SFSWAP-210ENST00000541286 RHPN1-AS1Q9BWJ2 59 aa10.7□□□□□ -0.7
SFSWAP-210ENST00000541286 ZNF702PQ9H963 129 aa10.7□□□□□ -0.7
SFSWAP-210ENST00000541286 SNCGO76070 127 aa10.7□□□□□ -0.7
SFSWAP-210ENST00000541286 TMEM170BQ5T4T1 132 aa10.7□□□□□ -0.7
SFSWAP-210ENST00000541286 NTN5Q8WTR8 489 aaPredicted RBP10.7□□□□□ -0.7
SFSWAP-210ENST00000541286 RASL10AQ92737 203 aa10.7□□□□□ -0.7
SFSWAP-210ENST00000541286 TEX49A0A1B0GTD5 131 aa10.69□□□□□ -0.7
SFSWAP-210ENST00000541286 TAL2Q16559 108 aa10.69□□□□□ -0.7
SFSWAP-210ENST00000541286 KHDC1LQ5JSQ8 128 aa10.69□□□□□ -0.7
SFSWAP-210ENST00000541286 Q6ZSV7 163 aa10.69□□□□□ -0.7
SFSWAP-210ENST00000541286 ELANEP08246 267 aa10.69□□□□□ -0.7
SFSWAP-210ENST00000541286 NDUFA11Q86Y39 141 aa10.69□□□□□ -0.7
SFSWAP-210ENST00000541286 ZFAND2AQ8N6M9 145 aa10.69□□□□□ -0.7
SFSWAP-210ENST00000541286 TRAV12-3A0A0B4J271 114 aa10.69□□□□□ -0.7
SFSWAP-210ENST00000541286 CFC1BP0CG36 223 aa10.69□□□□□ -0.7
SFSWAP-210ENST00000541286 CFC1P0CG37 223 aa10.69□□□□□ -0.7
SFSWAP-210ENST00000541286 DPH3P1Q9H4G8 78 aa10.69□□□□□ -0.7
SFSWAP-210ENST00000541286 ZNF256Q9Y2P7 627 aaPredicted RBP10.68□□□□□ -0.7
SFSWAP-210ENST00000541286 SLC25A20O43772 301 aa10.68□□□□□ -0.7
SFSWAP-210ENST00000541286 DUSP14O95147 198 aaKnown RBP10.68□□□□□ -0.7
SFSWAP-210ENST00000541286 NDUFV3P56181 108 aaKnown RBP10.68□□□□□ -0.7
SFSWAP-210ENST00000541286 NPC2P61916 151 aa10.68□□□□□ -0.7
SFSWAP-210ENST00000541286 RPL32P62910 135 aaKnown RBP10.68□□□□□ -0.7
SFSWAP-210ENST00000541286 TRAV12-2A0A075B6T6 113 aa10.67□□□□□ -0.7
SFSWAP-210ENST00000541286 ADARB2-AS1A8MUL3 147 aa10.67□□□□□ -0.7
SFSWAP-210ENST00000541286 CD7P09564 240 aa10.67□□□□□ -0.7
SFSWAP-210ENST00000541286 GPHB5Q86YW7 130 aa10.67□□□□□ -0.7
SFSWAP-210ENST00000541286 BAALCQ8WXS3 180 aa10.67□□□□□ -0.7
SFSWAP-210ENST00000541286 LINC00477Q96M19 166 aa10.67□□□□□ -0.7
SFSWAP-210ENST00000541286 RPL39P62891 51 aaKnown RBP10.67□□□□□ -0.7
SFSWAP-210ENST00000541286 NACAE9PAV3 2078 aa10.67□□□□□ -0.7
SFSWAP-210ENST00000541286 BRI3O95415 125 aa10.67□□□□□ -0.7
SFSWAP-210ENST00000541286 ORMDL2Q53FV1 153 aa10.67□□□□□ -0.7
SFSWAP-210ENST00000541286 TRAV2A0A0B4J234 112 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms