RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 TRGC1P0CF51 173 aa12.3□□□□□ -0.44
SNRPA1-203ENST00000540017 PEA15Q15121 130 aa12.3□□□□□ -0.44
SNRPA1-203ENST00000540017 TWIST1Q15672 202 aa12.3□□□□□ -0.44
SNRPA1-203ENST00000540017 TMEM241Q24JQ0 296 aa12.3□□□□□ -0.44
SNRPA1-203ENST00000540017 PGLYRP4Q96LB8 373 aa12.3□□□□□ -0.44
SNRPA1-203ENST00000540017 RPL23P62829 140 aaKnown RBP12.29□□□□□ -0.44
SNRPA1-203ENST00000540017 CT83Q5H943 113 aa12.29□□□□□ -0.44
SNRPA1-203ENST00000540017 DAZ4Q86SG3 579 aaKnown RBP12.29□□□□□ -0.44
SNRPA1-203ENST00000540017 NFE4Q86UQ8 179 aa12.29□□□□□ -0.44
SNRPA1-203ENST00000540017 DPH3P1Q9H4G8 78 aa12.29□□□□□ -0.44
SNRPA1-203ENST00000540017 DAZ3Q9NR90 486 aaKnown RBP12.29□□□□□ -0.44
SNRPA1-203ENST00000540017 OSTCQ9NRP0 149 aa12.29□□□□□ -0.44
SNRPA1-203ENST00000540017 FOXA3P55318 350 aaPredicted RBP12.28□□□□□ -0.44
SNRPA1-203ENST00000540017 KRTAP10-2P60368 255 aa12.28□□□□□ -0.44
SNRPA1-203ENST00000540017 FAM74A3Q4VXF1 159 aa12.28□□□□□ -0.44
SNRPA1-203ENST00000540017 NIT1Q86X76 327 aa12.28□□□□□ -0.44
SNRPA1-203ENST00000540017 ISOC2Q96AB3 205 aa12.28□□□□□ -0.44
SNRPA1-203ENST00000540017 NTM-AS1Q6ZSK4 140 aa12.27□□□□□ -0.45
SNRPA1-203ENST00000540017 SMDT1Q9H4I9 107 aa12.27□□□□□ -0.45
SNRPA1-203ENST00000540017 Q9HAA7 133 aa12.27□□□□□ -0.45
SNRPA1-203ENST00000540017 V9GYV3 84 aa12.27□□□□□ -0.45
SNRPA1-203ENST00000540017 HERC2O95714 4834 aa12.27□□□□□ -0.45
SNRPA1-203ENST00000540017 TRBV6-8A0A0A6YYG3 113 aa12.26□□□□□ -0.45
SNRPA1-203ENST00000540017 SPATA12Q7Z6I5 190 aa12.26□□□□□ -0.45
SNRPA1-203ENST00000540017 TSKUQ8WUA8 353 aa12.26□□□□□ -0.45
SNRPA1-203ENST00000540017 NAT8Q9UHE5 227 aa12.26□□□□□ -0.45
SNRPA1-203ENST00000540017 HIGD1CA8MV81 97 aa12.25□□□□□ -0.45
SNRPA1-203ENST00000540017 ADIRFQ15847 76 aa12.25□□□□□ -0.45
SNRPA1-203ENST00000540017 RASL11AQ6T310 242 aa12.25□□□□□ -0.45
SNRPA1-203ENST00000540017 TRAV26-2A0A0B4J265 109 aa12.24□□□□□ -0.45
SNRPA1-203ENST00000540017 H7C1H1 209 aa12.24□□□□□ -0.45
SNRPA1-203ENST00000540017 DNAJC30Q96LL9 226 aa12.24□□□□□ -0.45
SNRPA1-203ENST00000540017 GFRA4Q9GZZ7 299 aa12.24□□□□□ -0.45
SNRPA1-203ENST00000540017 A0A087WTM6 91 aa12.23□□□□□ -0.45
SNRPA1-203ENST00000540017 C16orf90A8MZG2 172 aa12.23□□□□□ -0.45
SNRPA1-203ENST00000540017 FUSP35637 526 aaKnown RBP eCLIP12.23□□□□□ -0.45
SNRPA1-203ENST00000540017 IFITM2Q01629 132 aa12.23□□□□□ -0.45
SNRPA1-203ENST00000540017 LAGE3Q14657 143 aa12.23□□□□□ -0.45
SNRPA1-203ENST00000540017 C15orf54Q8N8G6 183 aa12.23□□□□□ -0.45
SNRPA1-203ENST00000540017 GATD1Q8NB37 220 aa12.23□□□□□ -0.45
SNRPA1-203ENST00000540017 NIT2Q9NQR4 276 aa12.23□□□□□ -0.45
SNRPA1-203ENST00000540017 LRP1BQ9NZR2 4599 aa12.23□□□□□ -0.45
SNRPA1-203ENST00000540017 DNAH5Q8TE73 4624 aa12.23□□□□□ -0.45
SNRPA1-203ENST00000540017 FAM231BA6NCW3 169 aa12.22□□□□□ -0.45
SNRPA1-203ENST00000540017 A0A1B0GUT8 65 aa12.21□□□□□ -0.45
SNRPA1-203ENST00000540017 RAB14P61106 215 aa12.21□□□□□ -0.45
SNRPA1-203ENST00000540017 NUP35Q8NFH5 326 aa12.21□□□□□ -0.45
SNRPA1-203ENST00000540017 DEFB104AQ8WTQ1 72 aa12.21□□□□□ -0.45
SNRPA1-203ENST00000540017 KLK12Q9UKR0 248 aa12.21□□□□□ -0.45
SNRPA1-203ENST00000540017 URGCP-MRPS24S4R325 110 aa12.21□□□□□ -0.45
SNRPA1-203ENST00000540017 A0A087WX48 190 aa12.2□□□□□ -0.46
SNRPA1-203ENST00000540017 SMIM15Q7Z3B0 74 aa12.2□□□□□ -0.46
SNRPA1-203ENST00000540017 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.2□□□□□ -0.46
SNRPA1-203ENST00000540017 LRCOL1A6NCL2 159 aa12.19□□□□□ -0.46
SNRPA1-203ENST00000540017 TMEM262E9PQX1 116 aa12.19□□□□□ -0.46
SNRPA1-203ENST00000540017 PSCAO43653 123 aa12.19□□□□□ -0.46
SNRPA1-203ENST00000540017 MPV17L2Q567V2 206 aa12.19□□□□□ -0.46
SNRPA1-203ENST00000540017 BORCS7Q96B45 105 aa12.19□□□□□ -0.46
SNRPA1-203ENST00000540017 RPL39LQ96EH5 51 aaKnown RBP12.19□□□□□ -0.46
SNRPA1-203ENST00000540017 CHCHD5Q9BSY4 110 aa12.19□□□□□ -0.46
SNRPA1-203ENST00000540017 CHCHD7Q9BUK0 85 aa12.19□□□□□ -0.46
SNRPA1-203ENST00000540017 RYR1P21817 5038 aa12.18□□□□□ -0.46
SNRPA1-203ENST00000540017 GAS8-AS1O95177 125 aa12.18□□□□□ -0.46
SNRPA1-203ENST00000540017 IQCJQ1A5X6 159 aa12.18□□□□□ -0.46
SNRPA1-203ENST00000540017 TMEM97Q5BJF2 176 aa12.18□□□□□ -0.46
SNRPA1-203ENST00000540017 CLLU1Q5K131 121 aa12.18□□□□□ -0.46
SNRPA1-203ENST00000540017 TRAV8-3A0A0A6YYJ7 113 aa12.17□□□□□ -0.46
SNRPA1-203ENST00000540017 SMIM27A0A1W2PRY6 76 aa12.17□□□□□ -0.46
SNRPA1-203ENST00000540017 ATRAIDQ6UW56 229 aa12.17□□□□□ -0.46
SNRPA1-203ENST00000540017 MAPKAPK5-AS1Q8N8E1 139 aa12.17□□□□□ -0.46
SNRPA1-203ENST00000540017 Q8N976 141 aa12.17□□□□□ -0.46
SNRPA1-203ENST00000540017 RNF185Q96GF1 192 aa12.17□□□□□ -0.46
SNRPA1-203ENST00000540017 TMEM191AQ9H0A3 160 aa12.17□□□□□ -0.46
SNRPA1-203ENST00000540017 TRBV25-1A0A075B6N4 114 aa12.16□□□□□ -0.46
SNRPA1-203ENST00000540017 IGHV1-24A0A0C4DH33 117 aa12.16□□□□□ -0.46
SNRPA1-203ENST00000540017 EREGO14944 169 aa12.16□□□□□ -0.46
SNRPA1-203ENST00000540017 GAGE6Q13070 117 aa12.16□□□□□ -0.46
SNRPA1-203ENST00000540017 UBE2WQ96B02 151 aa12.16□□□□□ -0.46
SNRPA1-203ENST00000540017 NAT8BQ9UHF3 227 aa12.16□□□□□ -0.46
SNRPA1-203ENST00000540017 WFDC2Q14508 124 aa12.15□□□□□ -0.46
SNRPA1-203ENST00000540017 KCNIP4Q6PIL6 250 aa12.15□□□□□ -0.46
SNRPA1-203ENST00000540017 ENHOQ6UWT2 76 aa12.15□□□□□ -0.46
SNRPA1-203ENST00000540017 FRZBQ92765 325 aa12.15□□□□□ -0.46
SNRPA1-203ENST00000540017 TM2D2Q9BX73 214 aa12.15□□□□□ -0.46
SNRPA1-203ENST00000540017 PGPEP1Q9NXJ5 209 aa12.15□□□□□ -0.46
SNRPA1-203ENST00000540017 RAB4AP20338 218 aa12.14□□□□□ -0.47
SNRPA1-203ENST00000540017 RBX1P62877 108 aa12.14□□□□□ -0.47
SNRPA1-203ENST00000540017 RIGQ13278 110 aa12.14□□□□□ -0.47
SNRPA1-203ENST00000540017 ELOBQ15370 118 aa12.14□□□□□ -0.47
SNRPA1-203ENST00000540017 AMN1Q8IY45 258 aa12.14□□□□□ -0.47
SNRPA1-203ENST00000540017 ANGP03950 147 aaKnown RBP12.13□□□□□ -0.47
SNRPA1-203ENST00000540017 APOBP04114 4563 aaKnown RBP12.13□□□□□ -0.47
SNRPA1-203ENST00000540017 HSPG2P98160 4391 aa12.12□□□□□ -0.47
SNRPA1-203ENST00000540017 IGKV2D-24A0A075B6R9 120 aa12.12□□□□□ -0.47
SNRPA1-203ENST00000540017 COTL1Q14019 142 aa12.12□□□□□ -0.47
SNRPA1-203ENST00000540017 TMEM243Q9BU79 118 aa12.12□□□□□ -0.47
SNRPA1-203ENST00000540017 SDHAF1A6NFY7 115 aa12.11□□□□□ -0.47
SNRPA1-203ENST00000540017 LECT2O14960 151 aa12.11□□□□□ -0.47
SNRPA1-203ENST00000540017 RPS10P46783 165 aaKnown RBP12.11□□□□□ -0.47
SNRPA1-203ENST00000540017 PKIAP61925 76 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms