RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 TRBV20-1A0A075B6N2 111 aa9.36□□□□□ -0.91
SFSWAP-208ENST00000539506 CD7P09564 240 aa9.36□□□□□ -0.91
SFSWAP-208ENST00000539506 Q1RN00 199 aa9.36□□□□□ -0.91
SFSWAP-208ENST00000539506 IGHV4-59P01825 116 aa9.36□□□□□ -0.91
SFSWAP-208ENST00000539506 PRM2P04554 102 aa9.36□□□□□ -0.91
SFSWAP-208ENST00000539506 DAZ1Q9NQZ3 744 aaKnown RBP9.36□□□□□ -0.91
SFSWAP-208ENST00000539506 ZFYVE26Q68DK2 2539 aa9.36□□□□□ -0.91
SFSWAP-208ENST00000539506 COX6B1P14854 86 aa9.36□□□□□ -0.91
SFSWAP-208ENST00000539506 Q6ZSV7 163 aa9.36□□□□□ -0.91
SFSWAP-208ENST00000539506 SCGB1A1P11684 91 aa9.35□□□□□ -0.91
SFSWAP-208ENST00000539506 UBE2D1P51668 147 aa9.35□□□□□ -0.91
SFSWAP-208ENST00000539506 MAPK1IP1LQ8NDC0 245 aa9.35□□□□□ -0.91
SFSWAP-208ENST00000539506 DCANP1Q8TF63 244 aa9.35□□□□□ -0.91
SFSWAP-208ENST00000539506 CITED1Q99966 193 aa9.35□□□□□ -0.91
SFSWAP-208ENST00000539506 PRSS2P07478 247 aa9.34□□□□□ -0.91
SFSWAP-208ENST00000539506 DEFB112Q30KQ8 113 aa9.34□□□□□ -0.91
SFSWAP-208ENST00000539506 PSMG4Q5JS54 123 aa9.34□□□□□ -0.91
SFSWAP-208ENST00000539506 SUMO4Q6EEV6 95 aa9.34□□□□□ -0.91
SFSWAP-208ENST00000539506 CEMP1Q6PRD7 247 aaPredicted RBP9.34□□□□□ -0.91
SFSWAP-208ENST00000539506 SDHAF1A6NFY7 115 aa9.34□□□□□ -0.91
SFSWAP-208ENST00000539506 A8MWV9 139 aa9.34□□□□□ -0.91
SFSWAP-208ENST00000539506 A8MZ25 164 aa9.34□□□□□ -0.91
SFSWAP-208ENST00000539506 PSMB8P28062 276 aa9.34□□□□□ -0.91
SFSWAP-208ENST00000539506 LINC00315P59091 139 aa9.34□□□□□ -0.91
SFSWAP-208ENST00000539506 EIF4EBP3O60516 100 aaPredicted RBP9.34□□□□□ -0.92
SFSWAP-208ENST00000539506 ACACBO00763 2458 aa9.33□□□□□ -0.92
SFSWAP-208ENST00000539506 KLLNB2CW77 178 aa9.33□□□□□ -0.92
SFSWAP-208ENST00000539506 B4DSR2 109 aa9.33□□□□□ -0.92
SFSWAP-208ENST00000539506 ZNF56Q15929 161 aa9.33□□□□□ -0.92
SFSWAP-208ENST00000539506 MDFICQ9P1T7 246 aa9.33□□□□□ -0.92
SFSWAP-208ENST00000539506 KIF25-AS1Q9Y6Z4 181 aa9.33□□□□□ -0.92
SFSWAP-208ENST00000539506 LGALS3P17931 250 aaKnown RBP9.33□□□□□ -0.92
SFSWAP-208ENST00000539506 CRLF1O75462 422 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 IGHV3-30P01768 117 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 IGHV3-30-5P0DP03 117 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 TEN1Q86WV5 123 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 A0A096LNT2 108 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 B5MCH6 92 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 J3QQQ9 107 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 UBE2D3P61077 147 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 UBE2D2P62837 147 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 FAM159AQ6UWV7 190 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 MUSTN1Q8IVN3 82 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 PPDPFLQ8WWR9 84 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 ANAPC13Q9BS18 74 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 AKAP9Q99996 3911 aa9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 ANKRD17O75179 2603 aaKnown RBP9.32□□□□□ -0.92
SFSWAP-208ENST00000539506 ZNF688P0C7X2 276 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 P0DMU3 169 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 FAM231AP0DMU4 169 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 FAM231CP0DMU5 169 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 PMVKQ15126 192 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 C3orf56Q8N813 242 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 NTN5Q8WTR8 489 aaPredicted RBP9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 WNK1Q9H4A3 2382 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 NBPF19A0A087WUL8 3843 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 A0A0J9YXV3 536 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 IGIPA6NJ69 53 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 HERVK_113P61574 105 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 DUX5Q96PT3 197 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 PRO1854Q9UHT4 67 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 TLN2Q9Y4G6 2542 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 SLC25A20O43772 301 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 MYO9AB2RTY4 2548 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 TEX15Q9BXT5 2789 aa9.31□□□□□ -0.92
SFSWAP-208ENST00000539506 TEX49A0A1B0GTD5 131 aa9.3□□□□□ -0.92
SFSWAP-208ENST00000539506 K7EMT4 169 aa9.3□□□□□ -0.92
SFSWAP-208ENST00000539506 NXPH4O95158 308 aa9.3□□□□□ -0.92
SFSWAP-208ENST00000539506 C10orf126Q8N4M7 172 aa9.3□□□□□ -0.92
SFSWAP-208ENST00000539506 ZNF462Q96JM2 2506 aa9.3□□□□□ -0.92
SFSWAP-208ENST00000539506 TRAV8-3A0A0A6YYJ7 113 aa9.3□□□□□ -0.92
SFSWAP-208ENST00000539506 A0A0U1RRA0 63 aa9.3□□□□□ -0.92
SFSWAP-208ENST00000539506 MED14OSP0DP75 135 aa9.3□□□□□ -0.92
SFSWAP-208ENST00000539506 HIST2H2BDQ6DRA6 164 aa9.3□□□□□ -0.92
SFSWAP-208ENST00000539506 POM121L12Q8N7R1 296 aa9.3□□□□□ -0.92
SFSWAP-208ENST00000539506 Q9UF83 564 aa9.3□□□□□ -0.92
SFSWAP-208ENST00000539506 LRRK2Q5S007 2527 aa9.3□□□□□ -0.92
SFSWAP-208ENST00000539506 PROK1P58294 105 aa9.29□□□□□ -0.92
SFSWAP-208ENST00000539506 TCTEX1D4Q5JR98 221 aa9.29□□□□□ -0.92
SFSWAP-208ENST00000539506 DAND5Q8N907 189 aa9.29□□□□□ -0.92
SFSWAP-208ENST00000539506 TRAV4A0A0B4J268 109 aa9.29□□□□□ -0.92
SFSWAP-208ENST00000539506 TRBV7-9A0A0J9YWB2 115 aa9.29□□□□□ -0.92
SFSWAP-208ENST00000539506 KNCNA6PVL3 124 aa9.29□□□□□ -0.92
SFSWAP-208ENST00000539506 PRB1P04280 392 aa9.29□□□□□ -0.92
SFSWAP-208ENST00000539506 PTPN13Q12923 2485 aa9.29□□□□□ -0.92
SFSWAP-208ENST00000539506 FAM208BQ5VWN6 2430 aa9.29□□□□□ -0.92
SFSWAP-208ENST00000539506 USP24Q9UPU5 2620 aa9.28□□□□□ -0.92
SFSWAP-208ENST00000539506 SLC25A29Q8N8R3 303 aa9.28□□□□□ -0.92
SFSWAP-208ENST00000539506 PRRC2AP48634 2157 aaKnown RBP9.28□□□□□ -0.92
SFSWAP-208ENST00000539506 HERV-K104P63124 156 aa9.28□□□□□ -0.92
SFSWAP-208ENST00000539506 UBR5O95071 2799 aaPredicted RBP9.28□□□□□ -0.92
SFSWAP-208ENST00000539506 SPINK13Q1W4C9 94 aa9.27□□□□□ -0.92
SFSWAP-208ENST00000539506 POLR2KP53803 58 aaKnown RBP9.27□□□□□ -0.93
SFSWAP-208ENST00000539506 TEX29Q8N6K0 151 aa9.27□□□□□ -0.93
SFSWAP-208ENST00000539506 ERG28Q9UKR5 140 aa9.27□□□□□ -0.93
SFSWAP-208ENST00000539506 ABCA12Q86UK0 2595 aa9.27□□□□□ -0.93
SFSWAP-208ENST00000539506 VCYO14598 125 aa9.27□□□□□ -0.93
SFSWAP-208ENST00000539506 SYNJ2BPP57105 145 aa9.27□□□□□ -0.93
SFSWAP-208ENST00000539506 LINC01356Q8N9X3 169 aa9.27□□□□□ -0.93
SFSWAP-208ENST00000539506 ZFAND6Q6FIF0 208 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms