RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	MRPL40	Q9NQ50	206 aa	Known RBP	0.48	□□□□□ -2.33
CD44-238	ENST00000534296	COA4	Q9NYJ1	87 aa		0.48	□□□□□ -2.33
CD44-238	ENST00000534296	COMMD3	Q9UBI1	195 aa		0.48	□□□□□ -2.33
CD44-238	ENST00000534296	GINS2	Q9Y248	185 aa		0.48	□□□□□ -2.33
CD44-238	ENST00000534296	AFDN	P55196	1824 aa	Known RBP	0.48	□□□□□ -2.33
CD44-238	ENST00000534296	BLM	P54132	1417 aa	Predicted RBP	0.47	□□□□□ -2.33
CD44-238	ENST00000534296	ANKRD30A	Q9BXX3	1397 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	RIMS1	Q86UR5	1692 aa	Known RBP	0.47	□□□□□ -2.33
CD44-238	ENST00000534296	LRP1B	Q9NZR2	4599 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	TRAV17	A0A0B4J275	112 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	YPEL1	O60688	119 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	IGKC	P01834	107 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	RBP4	P02753	201 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	CD3D	P04234	171 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	DBI	P07108	87 aa	Known RBP	0.47	□□□□□ -2.33
CD44-238	ENST00000534296	PLGLB1	Q02325	96 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	ZNF56	Q15929	161 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	CCDC153	Q494R4	210 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	GLYATL3	Q5SZD4	288 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	TCTE3	Q8IZS6	198 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	OTOS	Q8NHW6	89 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	ZMYM4	Q5VZL5	1548 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	CEP152	O94986	1710 aa		0.47	□□□□□ -2.33
CD44-238	ENST00000534296	LAMA5	O15230	3695 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	PLXNA1	Q9UIW2	1896 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	LOC101927531	A0A1B0GV80	90 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	TCRA	P04437	139 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	CCK	P06307	115 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	ADCYAP1	P18509	176 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	RPS28	P62857	69 aa	Known RBP	0.46	□□□□□ -2.34
CD44-238	ENST00000534296	FXYD3	Q14802	87 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	OR4S1	Q8NGB4	309 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	LINC00208	Q96KT6	92 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	DSCR8	Q96T75	97 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	SLC35B3	Q9H1N7	401 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	TAS2R8	Q9NYW2	309 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	METTL1	Q9UBP6	276 aa	Known RBP	0.46	□□□□□ -2.34
CD44-238	ENST00000534296	DLEC1	Q9Y238	1755 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	TET3	O43151	1660 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	PTPRG	P23470	1445 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	ARHGAP31	Q2M1Z3	1444 aa		0.46	□□□□□ -2.34
CD44-238	ENST00000534296	PRKDC	P78527	4128 aa	Known RBP	0.45	□□□□□ -2.34
CD44-238	ENST00000534296	MED23	Q9ULK4	1368 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	DNAH7	Q8WXX0	4024 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	CASZ1	Q86V15	1759 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	MAPKBP1	O60336	1514 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296		A0A1B0GX51	115 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	MCRIP1	C9JLW8	97 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	DEGS1	O15121	323 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	LY6G6C	O95867	125 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	SLC25A5	P05141	298 aa	Known RBP	0.45	□□□□□ -2.34
CD44-238	ENST00000534296	DR1	Q01658	176 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	KRTAP19-3	Q7Z4W3	81 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	PPDPFL	Q8WWR9	84 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	BANF2	Q9H503	90 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	TMEM14B	Q9NUH8	114 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	OVOS2	A0A0G2JMS6	1433 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	ALK	Q9UM73	1620 aa		0.45	□□□□□ -2.34
CD44-238	ENST00000534296	THOC2	Q8NI27	1593 aa	Known RBP	0.45	□□□□□ -2.34
CD44-238	ENST00000534296	AKAP11	Q9UKA4	1901 aa		0.44	□□□□□ -2.34
CD44-238	ENST00000534296	PKHD1	P08F94	4074 aa		0.44	□□□□□ -2.34
CD44-238	ENST00000534296	RALGAPB	Q86X10	1494 aa		0.44	□□□□□ -2.34
CD44-238	ENST00000534296	TRAV36DV7	A0A075B6V5	113 aa		0.44	□□□□□ -2.34
CD44-238	ENST00000534296	TRBV10-1	A0A0K0K1A3	114 aa		0.44	□□□□□ -2.34
CD44-238	ENST00000534296	TEX49	A0A1B0GTD5	131 aa		0.44	□□□□□ -2.34
CD44-238	ENST00000534296		F2Z2F3	143 aa		0.44	□□□□□ -2.34
CD44-238	ENST00000534296	ZNF670-ZNF695	F2Z2N8	137 aa		0.44	□□□□□ -2.34
CD44-238	ENST00000534296	KLKP1	Q107X0	134 aa		0.44	□□□□□ -2.34
CD44-238	ENST00000534296	SPINK6	Q6UWN8	80 aa		0.44	□□□□□ -2.34
CD44-238	ENST00000534296	LZIC	Q8WZA0	190 aa		0.44	□□□□□ -2.34
CD44-238	ENST00000534296	TMEM141	Q96I45	108 aa		0.44	□□□□□ -2.34
CD44-238	ENST00000534296	LRP1	Q07954	4544 aa	Known RBP	0.44	□□□□□ -2.34
CD44-238	ENST00000534296	EFCAB6	Q5THR3	1501 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	TMEM131L	A2VDJ0	1609 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	LRP6	O75581	1613 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	AHCTF1	Q8WYP5	2266 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	HRNR	Q86YZ3	2850 aa	Predicted RBP	0.43	□□□□□ -2.34
CD44-238	ENST00000534296	TRAV2	A0A0B4J234	112 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296		C9JAW5	83 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	MT-ND4L	P03901	98 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	AKR1D1	P51857	326 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	RPL37	P61927	97 aa	Known RBP	0.43	□□□□□ -2.34
CD44-238	ENST00000534296	NCS1	P62166	190 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	OR8B8	Q15620	311 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	TMEM244	Q5VVB8	128 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	SLC25A26	Q70HW3	274 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	MMGT1	Q8N4V1	131 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	C5orf56	Q8N8D9	126 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	PYDC1	Q8WXC3	89 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	FAM103A1	Q9BTL3	118 aa	Known RBP	0.43	□□□□□ -2.34
CD44-238	ENST00000534296	BET1L	Q9NYM9	111 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	NOP16	Q9Y3C1	178 aa	Known RBP	0.43	□□□□□ -2.34
CD44-238	ENST00000534296	ASXL3	Q9C0F0	2248 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	SACS	Q9NZJ4	4579 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	NRK	Q7Z2Y5	1582 aa		0.43	□□□□□ -2.34
CD44-238	ENST00000534296	ZNF142	P52746	1687 aa	Predicted RBP	0.43	□□□□□ -2.34
CD44-238	ENST00000534296	KIAA0556	O60303	1618 aa		0.42	□□□□□ -2.34
CD44-238	ENST00000534296	DYNC1H1	Q14204	4646 aa	Known RBP	0.42	□□□□□ -2.34
CD44-238	ENST00000534296	BCORL1	Q5H9F3	1711 aa		0.42	□□□□□ -2.34
CD44-238	ENST00000534296	PKDREJ	Q9NTG1	2253 aa		0.42	□□□□□ -2.34

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