RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 DOCK7Q96N67 2140 aa3.93□□□□□ -1.78
CD44-236ENST00000533222 SPACA5Q96QH8 159 aa3.93□□□□□ -1.78
CD44-236ENST00000533222 ARRDC1-AS1Q9H2J1 176 aa3.93□□□□□ -1.78
CD44-236ENST00000533222 COL4A1P02462 1669 aa3.93□□□□□ -1.78
CD44-236ENST00000533222 GNRH2O43555 120 aa3.92□□□□□ -1.78
CD44-236ENST00000533222 NDUFA3O95167 84 aa3.92□□□□□ -1.78
CD44-236ENST00000533222 DEFA4P12838 97 aa3.92□□□□□ -1.78
CD44-236ENST00000533222 RNASE4P34096 147 aaKnown RBP3.92□□□□□ -1.78
CD44-236ENST00000533222 SYCNQ0VAF6 134 aa3.92□□□□□ -1.78
CD44-236ENST00000533222 LINC01554Q52M75 96 aa3.92□□□□□ -1.78
CD44-236ENST00000533222 LINC00322Q6ZN03 302 aaPredicted RBP3.92□□□□□ -1.78
CD44-236ENST00000533222 ZNF833PQ6ZTB9 187 aa3.92□□□□□ -1.78
CD44-236ENST00000533222 Q75L30 129 aa3.92□□□□□ -1.78
CD44-236ENST00000533222 TMEM61Q8N0U2 210 aa3.92□□□□□ -1.78
CD44-236ENST00000533222 RNF185Q96GF1 192 aa3.92□□□□□ -1.78
CD44-236ENST00000533222 TIMM8BQ9Y5J9 83 aaPredicted RBP3.92□□□□□ -1.78
CD44-236ENST00000533222 CACNA1CQ13936 2221 aa3.92□□□□□ -1.78
CD44-236ENST00000533222 SPTBP11277 2137 aa3.92□□□□□ -1.78
CD44-236ENST00000533222 ABCA7Q8IZY2 2146 aa3.92□□□□□ -1.78
CD44-236ENST00000533222 IGHV5-10-1A0A0J9YXX1 117 aa3.91□□□□□ -1.78
CD44-236ENST00000533222 LOC389332A0A1B0GUA5 103 aa3.91□□□□□ -1.78
CD44-236ENST00000533222 EPOPA6NHQ4 379 aa3.91□□□□□ -1.78
CD44-236ENST00000533222 C4orf51C9J302 202 aa3.91□□□□□ -1.78
CD44-236ENST00000533222 I3L3M4 83 aa3.91□□□□□ -1.78
CD44-236ENST00000533222 SOCS3O14543 225 aa3.91□□□□□ -1.78
CD44-236ENST00000533222 BAALC-AS2P0C853 105 aa3.91□□□□□ -1.78
CD44-236ENST00000533222 IGLV3-21P80748 117 aaPredicted RBP3.91□□□□□ -1.78
CD44-236ENST00000533222 C10orf128Q5T292 105 aa3.91□□□□□ -1.78
CD44-236ENST00000533222 C10orf113Q5VZT2 155 aa3.91□□□□□ -1.78
CD44-236ENST00000533222 Q6ZTC4 211 aa3.91□□□□□ -1.78
CD44-236ENST00000533222 MUSTN1Q8IVN3 82 aa3.91□□□□□ -1.78
CD44-236ENST00000533222 Q9HAA7 133 aa3.91□□□□□ -1.78
CD44-236ENST00000533222 IGHV1-45A0A0A0MS14 117 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 IGKV1D-43A0A0B4J1Z2 117 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 IGHV1OR15-9A0A0B4J2B8 117 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 IGKV1-12A0A0C4DH73 117 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 PCNX2A6NKB5 2137 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 H0YGX0 51 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 H3BQ85 93 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 BUB1B-PAK6H3BSN5 160 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 NTN3O00634 580 aaPredicted RBP3.9□□□□□ -1.79
CD44-236ENST00000533222 IGKV1D-12P01611 117 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 IGLV2-11P01706 119 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 IGHV1-69P01742 117 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 RPL28P46779 137 aaKnown RBP3.9□□□□□ -1.79
CD44-236ENST00000533222 MIAQ16674 131 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 SFTA2Q6UW10 78 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 GPHB5Q86YW7 130 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 LINC00269Q8N2A0 174 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 Q8N6K4 173 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 FGFBP3Q8TAT2 258 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 TMEM14BQ9NUH8 114 aa3.9□□□□□ -1.79
CD44-236ENST00000533222 PRRC2AP48634 2157 aaKnown RBP3.89□□□□□ -1.79
CD44-236ENST00000533222 C3orf84H3BNL1 204 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 M0R3E3 92 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 CCL24O00175 119 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 ZNHIT1O43257 154 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 CD24P25063 80 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 LINC00313P59037 77 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 ELOF1P60002 83 aaKnown RBP3.89□□□□□ -1.79
CD44-236ENST00000533222 RPL36AP83881 106 aaKnown RBP3.89□□□□□ -1.79
CD44-236ENST00000533222 PIGYQ3MUY2 71 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 LYZL1Q6UWQ5 148 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 Q6ZRP5 223 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 FAM19A3Q7Z5A8 133 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 SMIM29Q86T20 159 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 SMIM14Q96QK8 99 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 SMIM2Q9BVW6 85 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 UBL5Q9BZL1 73 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 LINC00846Q9NV44 126 aa3.89□□□□□ -1.79
CD44-236ENST00000533222 IGLV4-69A0A075B6H9 119 aa3.88□□□□□ -1.79
CD44-236ENST00000533222 IGKV1-27A0A075B6S5 117 aa3.88□□□□□ -1.79
CD44-236ENST00000533222 PRM2P04554 102 aa3.88□□□□□ -1.79
CD44-236ENST00000533222 PATE4P0C8F1 98 aa3.88□□□□□ -1.79
CD44-236ENST00000533222 PDE6GP18545 87 aa3.88□□□□□ -1.79
CD44-236ENST00000533222 C18orf65Q6ZTR6 163 aa3.88□□□□□ -1.79
CD44-236ENST00000533222 LINC00337Q8N6G1 96 aa3.88□□□□□ -1.79
CD44-236ENST00000533222 TMEM254Q8TBM7 123 aa3.88□□□□□ -1.79
CD44-236ENST00000533222 KLF14Q8TD94 323 aaPredicted RBP3.88□□□□□ -1.79
CD44-236ENST00000533222 BPESC1Q9GZL8 116 aa3.88□□□□□ -1.79
CD44-236ENST00000533222 CDC42SE1Q9NRR8 79 aa3.88□□□□□ -1.79
CD44-236ENST00000533222 C22orf24Q9Y442 160 aa3.88□□□□□ -1.79
CD44-236ENST00000533222 NACAE9PAV3 2078 aa3.88□□□□□ -1.79
CD44-236ENST00000533222 CABIN1Q9Y6J0 2220 aa3.87□□□□□ -1.79
CD44-236ENST00000533222 TRBV6-8A0A0A6YYG3 113 aa3.87□□□□□ -1.79
CD44-236ENST00000533222 TRAV22A0A0B4J277 110 aa3.87□□□□□ -1.79
CD44-236ENST00000533222 LOC101927531A0A1B0GV80 90 aa3.87□□□□□ -1.79
CD44-236ENST00000533222 TRBV12-3P01733 135 aa3.87□□□□□ -1.79
CD44-236ENST00000533222 TRGV3P03979 118 aa3.87□□□□□ -1.79
CD44-236ENST00000533222 RPL27AP46776 148 aaKnown RBP3.87□□□□□ -1.79
CD44-236ENST00000533222 PRCDQ00LT1 54 aa3.87□□□□□ -1.79
CD44-236ENST00000533222 MYO7BQ6PIF6 2116 aa3.87□□□□□ -1.79
CD44-236ENST00000533222 PATE2Q6UY27 113 aa3.87□□□□□ -1.79
CD44-236ENST00000533222 LITAFQ99732 161 aa3.87□□□□□ -1.79
CD44-236ENST00000533222 MED12Q93074 2177 aa3.87□□□□□ -1.79
CD44-236ENST00000533222 MUC22E2RYF6 1773 aaPredicted RBP3.86□□□□□ -1.79
CD44-236ENST00000533222 A0A087WVE0 104 aa3.86□□□□□ -1.79
CD44-236ENST00000533222 IGHV6-1A0A0B4J1U7 121 aa3.86□□□□□ -1.79
CD44-236ENST00000533222 IGKV1-8A0A0C4DH67 115 aa3.86□□□□□ -1.79
CD44-236ENST00000533222 LCE6AA0A183 80 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms