RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 SPRNQ5BIV9 151 aa0.91□□□□□ -2.26
CD44-234ENST00000531873 SAMD13Q5VXD3 122 aa0.91□□□□□ -2.26
CD44-234ENST00000531873 C2orf82Q6UX34 121 aa0.91□□□□□ -2.26
CD44-234ENST00000531873 ARPINQ7Z6K5 226 aa0.91□□□□□ -2.26
CD44-234ENST00000531873 AKAP14Q86UN6 197 aa0.91□□□□□ -2.26
CD44-234ENST00000531873 OR9Q1Q8NGQ5 310 aa0.91□□□□□ -2.26
CD44-234ENST00000531873 DIRC1Q969H9 104 aa0.91□□□□□ -2.26
CD44-234ENST00000531873 NIT2Q9NQR4 276 aa0.91□□□□□ -2.26
CD44-234ENST00000531873 RGPD8O14715 1765 aaPredicted RBP0.91□□□□□ -2.26
CD44-234ENST00000531873 RGPD5Q99666 1765 aa0.91□□□□□ -2.26
CD44-234ENST00000531873 ABCA13Q86UQ4 5058 aa0.9□□□□□ -2.26
CD44-234ENST00000531873 NFAT5O94916 1531 aa0.9□□□□□ -2.26
CD44-234ENST00000531873 CDC42BPAQ5VT25 1732 aa0.9□□□□□ -2.27
CD44-234ENST00000531873 DOT1LQ8TEK3 1739 aa0.9□□□□□ -2.27
CD44-234ENST00000531873 LCE6AA0A183 80 aa0.9□□□□□ -2.27
CD44-234ENST00000531873 NUPR1O60356 82 aa0.9□□□□□ -2.27
CD44-234ENST00000531873 SDC2P34741 201 aa0.9□□□□□ -2.27
CD44-234ENST00000531873 LINC00305Q7Z4B0 112 aa0.9□□□□□ -2.27
CD44-234ENST00000531873 CCL4L1Q8NHW4 92 aa0.9□□□□□ -2.27
CD44-234ENST00000531873 ORMDL1Q9P0S3 153 aa0.9□□□□□ -2.27
CD44-234ENST00000531873 GINS2Q9Y248 185 aa0.9□□□□□ -2.27
CD44-234ENST00000531873 KTN1Q86UP2 1357 aaKnown RBP0.9□□□□□ -2.27
CD44-234ENST00000531873 SVEP1Q4LDE5 3571 aa0.9□□□□□ -2.27
CD44-234ENST00000531873 ARAP2Q8WZ64 1704 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 CITO14578 2027 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 COL7A1Q02388 2944 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 TSTD3H0UI37 97 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 LYRM1O43325 122 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 FAM107AO95990 144 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 MT-ND6P03923 174 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 FAM74A1Q5RGS3 127 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 GDF5OSQ5U4N7 250 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 LINC00269Q8N2A0 174 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 LRRC18Q8N456 261 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 TSTD1Q8NFU3 115 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 BORCS5Q969J3 196 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 LINC00526Q96FQ7 95 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 ODF3Q96PU9 254 aa0.89□□□□□ -2.27
CD44-234ENST00000531873 TCEAL2Q9H3H9 227 aaPredicted RBP0.89□□□□□ -2.27
CD44-234ENST00000531873 PHIPQ8WWQ0 1821 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 TRBV7-6A0A0J9YX20 115 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 C9orf170A2RU37 121 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 F8W1H4 67 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 H3BMG7 143 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 KLF7O75840 302 aaPredicted RBP0.88□□□□□ -2.27
CD44-234ENST00000531873 FOXA3P55318 350 aaPredicted RBP0.88□□□□□ -2.27
CD44-234ENST00000531873 RPS28P62857 69 aaKnown RBP0.88□□□□□ -2.27
CD44-234ENST00000531873 MRPS36P82909 103 aaKnown RBP0.88□□□□□ -2.27
CD44-234ENST00000531873 MIR22HGQ0VDD5 57 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 OR5AS1Q8N127 324 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 TEX29Q8N6K0 151 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 TMEM35BQ8NCS4 154 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 OR5H6Q8NGV6 325 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 MCEEQ96PE7 176 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 HSPB11Q9Y547 144 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 SPAG17Q6Q759 2223 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 DLEC1Q9Y238 1755 aa0.88□□□□□ -2.27
CD44-234ENST00000531873 NRXN2Q9P2S2 1712 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 TRBV27A0A0K0K1C4 114 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 TNFSF15O95150 251 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 FABP4P15090 132 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 COX7CP15954 63 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 NDUFA6P56556 154 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 CIRBPQ14011 172 aaKnown RBP0.87□□□□□ -2.27
CD44-234ENST00000531873 FOXI2Q6ZQN5 318 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 GKN2Q86XP6 184 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 TMEM229BQ8NBD8 167 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 SKA2Q8WVK7 121 aaPredicted RBP0.87□□□□□ -2.27
CD44-234ENST00000531873 PRELID3AQ96N28 172 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 LXNQ9BS40 222 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 CBLN4Q9NTU7 201 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 Q9Y3F1 56 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 C22orf24Q9Y442 160 aa0.87□□□□□ -2.27
CD44-234ENST00000531873 GPR98Q8WXG9 6306 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 RNF213Q63HN8 5207 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 ABCA4P78363 2273 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 MED23Q9ULK4 1368 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 CUBNO60494 3623 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 CNTRLQ7Z7A1 2325 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 TRAV13-1A0A0B4J241 112 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 LOC107984640A0A0U1RRK4 108 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 LOC105371267A0A1B0GV96 52 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 DNAL4O96015 105 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 ARL14EPLP0DKL9 152 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 DEFB109BQ30KR1 87 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 DEFB121Q5J5C9 76 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 Q5XG85 94 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 LINC00322Q6ZN03 302 aaPredicted RBP0.86□□□□□ -2.27
CD44-234ENST00000531873 TEN1Q86WV5 123 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 OR4B1Q8NGF8 309 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 OR10AG1Q8NH19 301 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 OR4C12Q96R67 309 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 MRPL57Q9BQC6 102 aaKnown RBP0.86□□□□□ -2.27
CD44-234ENST00000531873 C19orf12Q9NSK7 152 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 FKBP11Q9NYL4 201 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 TPRKBQ9Y3C4 175 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 NEBP20929 6669 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 TSC2P49815 1807 aa0.86□□□□□ -2.27
CD44-234ENST00000531873 DDX60Q8IY21 1712 aaKnown RBP0.86□□□□□ -2.27
CD44-234ENST00000531873 ANK1P16157 1881 aa0.86□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 110.4 ms