RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 LINC00315P59091 139 aa10.02□□□□□ -0.81
CPSF1-206ENST00000531480 Q6ZSN1 163 aa10.02□□□□□ -0.81
CPSF1-206ENST00000531480 GATD1Q8NB37 220 aa10.02□□□□□ -0.81
CPSF1-206ENST00000531480 ICOSQ9Y6W8 199 aa10.02□□□□□ -0.81
CPSF1-206ENST00000531480 MUC21A0A0G2JKD1 596 aa10.01□□□□□ -0.81
CPSF1-206ENST00000531480 MUC21A0A140T8X8 626 aa10.01□□□□□ -0.81
CPSF1-206ENST00000531480 LY6G6CO95867 125 aa10.01□□□□□ -0.81
CPSF1-206ENST00000531480 TRGC2P03986 189 aa10.01□□□□□ -0.81
CPSF1-206ENST00000531480 LINC00694P0DN24 101 aa10.01□□□□□ -0.81
CPSF1-206ENST00000531480 RHOHQ15669 191 aa10.01□□□□□ -0.81
CPSF1-206ENST00000531480 MRPL23Q16540 153 aaKnown RBP10.01□□□□□ -0.81
CPSF1-206ENST00000531480 TMEM136Q6ZRR5 245 aa10.01□□□□□ -0.81
CPSF1-206ENST00000531480 MSRB1Q9NZV6 116 aa10.01□□□□□ -0.81
CPSF1-206ENST00000531480 LAMTOR2Q9Y2Q5 125 aa10.01□□□□□ -0.81
CPSF1-206ENST00000531480 A0A087WWL8 130 aa10□□□□□ -0.81
CPSF1-206ENST00000531480 IGHV3-73A0A0B4J1V6 119 aa10□□□□□ -0.81
CPSF1-206ENST00000531480 GYPEP15421 78 aa10□□□□□ -0.81
CPSF1-206ENST00000531480 DPH3P1Q9H4G8 78 aa10□□□□□ -0.81
CPSF1-206ENST00000531480 LOC100131303A0A0U1RQF7 123 aa9.99□□□□□ -0.81
CPSF1-206ENST00000531480 ESRGQ1W209 222 aa9.99□□□□□ -0.81
CPSF1-206ENST00000531480 FAM74A4Q5TZK3 123 aa9.99□□□□□ -0.81
CPSF1-206ENST00000531480 FAM104BQ5XKR9 115 aa9.99□□□□□ -0.81
CPSF1-206ENST00000531480 SH2D6Q7Z4S9 175 aa9.99□□□□□ -0.81
CPSF1-206ENST00000531480 PRADC1Q9BSG0 188 aa9.99□□□□□ -0.81
CPSF1-206ENST00000531480 UPK3BQ9BT76 320 aa9.99□□□□□ -0.81
CPSF1-206ENST00000531480 LINC00588Q9Y4M8 146 aa9.99□□□□□ -0.81
CPSF1-206ENST00000531480 DNAH6Q9C0G6 4158 aa9.99□□□□□ -0.81
CPSF1-206ENST00000531480 TRBV10-1A0A0K0K1A3 114 aa9.98□□□□□ -0.81
CPSF1-206ENST00000531480 H7C1H1 209 aa9.98□□□□□ -0.81
CPSF1-206ENST00000531480 CCL18P55774 89 aa9.98□□□□□ -0.81
CPSF1-206ENST00000531480 TIRAPP58753 221 aa9.98□□□□□ -0.81
CPSF1-206ENST00000531480 SSTP61278 116 aa9.98□□□□□ -0.81
CPSF1-206ENST00000531480 NEGR1Q7Z3B1 354 aa9.98□□□□□ -0.81
CPSF1-206ENST00000531480 ORMDL3Q8N138 153 aa9.98□□□□□ -0.81
CPSF1-206ENST00000531480 C14orf178Q8N769 122 aaPredicted RBP9.98□□□□□ -0.81
CPSF1-206ENST00000531480 MRAP2Q96G30 205 aa9.98□□□□□ -0.81
CPSF1-206ENST00000531480 SRIP30626 198 aa9.97□□□□□ -0.81
CPSF1-206ENST00000531480 CKS2P33552 79 aa9.97□□□□□ -0.81
CPSF1-206ENST00000531480 OR10J3Q5JRS4 329 aa9.97□□□□□ -0.81
CPSF1-206ENST00000531480 Q9UF83 564 aa9.97□□□□□ -0.81
CPSF1-206ENST00000531480 MRPS16Q9Y3D3 137 aaKnown RBP9.97□□□□□ -0.81
CPSF1-206ENST00000531480 PHOX2AO14813 284 aa9.96□□□□□ -0.82
CPSF1-206ENST00000531480 EVI2AP22794 236 aa9.96□□□□□ -0.82
CPSF1-206ENST00000531480 LYPD5Q6UWN5 251 aa9.96□□□□□ -0.82
CPSF1-206ENST00000531480 ZNRF2Q8NHG8 242 aa9.96□□□□□ -0.82
CPSF1-206ENST00000531480 TMA7Q9Y2S6 64 aaKnown RBP9.95□□□□□ -0.82
CPSF1-206ENST00000531480 F5H697 171 aa9.94□□□□□ -0.82
CPSF1-206ENST00000531480 Q0VG73 95 aa9.94□□□□□ -0.82
CPSF1-206ENST00000531480 ZNF56Q15929 161 aa9.94□□□□□ -0.82
CPSF1-206ENST00000531480 BAGE3Q86Y29 109 aa9.94□□□□□ -0.82
CPSF1-206ENST00000531480 UBE2DNLQ8IWF7 75 aa9.94□□□□□ -0.82
CPSF1-206ENST00000531480 M0QY20 66 aa9.93□□□□□ -0.82
CPSF1-206ENST00000531480 RAB4AP20338 218 aa9.93□□□□□ -0.82
CPSF1-206ENST00000531480 G0S2P27469 103 aa9.93□□□□□ -0.82
CPSF1-206ENST00000531480 TRBV7-3A0A075B6L6 115 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 TCAPO15273 167 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 HIST1H2BKO60814 126 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 HIST1H2BJP06899 126 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 HIST1H2BOP23527 126 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 HIST1H2BBP33778 126 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 HIST1H2BDP58876 126 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 UBE2D3P61077 147 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 HIST1H2BCP62807 126 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 UBE2D2P62837 147 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 HIST2H2BEQ16778 126 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.92□□□□□ -0.82
CPSF1-206ENST00000531480 Q6ZR54 194 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 AMN1Q8IY45 258 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 NEXN-AS1Q8NBZ9 246 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 ATP6V0E2Q8NHE4 81 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 HIST1H2BHQ93079 126 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 PRELID3AQ96N28 172 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 HIST1H2BNQ99877 126 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 HIST1H2BMQ99879 126 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 ALKBH7Q9BT30 221 aaPredicted RBP9.92□□□□□ -0.82
CPSF1-206ENST00000531480 MAP1LC3AQ9H492 121 aa9.92□□□□□ -0.82
CPSF1-206ENST00000531480 GAGE12JA6NER3 117 aa9.91□□□□□ -0.82
CPSF1-206ENST00000531480 MGPP08493 103 aa9.91□□□□□ -0.82
CPSF1-206ENST00000531480 S100A2P29034 98 aa9.91□□□□□ -0.82
CPSF1-206ENST00000531480 NDUFA6P56556 154 aa9.91□□□□□ -0.82
CPSF1-206ENST00000531480 GAGE1Q13065 139 aa9.91□□□□□ -0.82
CPSF1-206ENST00000531480 GAGE4Q13068 117 aa9.91□□□□□ -0.82
CPSF1-206ENST00000531480 GAGE5Q13069 117 aa9.91□□□□□ -0.82
CPSF1-206ENST00000531480 MRPL51Q4U2R6 128 aaKnown RBP9.91□□□□□ -0.82
CPSF1-206ENST00000531480 GAGE13Q4V321 117 aa9.91□□□□□ -0.82
CPSF1-206ENST00000531480 SUMO4Q6EEV6 95 aa9.91□□□□□ -0.82
CPSF1-206ENST00000531480 PRSS3P2Q8NHM4 247 aa9.91□□□□□ -0.82
CPSF1-206ENST00000531480 C20orf78Q9BR46 151 aa9.91□□□□□ -0.82
CPSF1-206ENST00000531480 GTSF1LQ9H1H1 148 aa9.91□□□□□ -0.82
CPSF1-206ENST00000531480 K7EMI3 77 aa9.9□□□□□ -0.82
CPSF1-206ENST00000531480 PMCHP20382 165 aa9.9□□□□□ -0.82
CPSF1-206ENST00000531480 RPL36AP83881 106 aaKnown RBP9.9□□□□□ -0.82
CPSF1-206ENST00000531480 RPL36ALQ969Q0 106 aaKnown RBP9.9□□□□□ -0.82
CPSF1-206ENST00000531480 DNAJC30Q96LL9 226 aa9.9□□□□□ -0.82
CPSF1-206ENST00000531480 Q9H8V8 135 aa9.9□□□□□ -0.82
CPSF1-206ENST00000531480 NXT2Q9NPJ8 142 aaKnown RBP9.9□□□□□ -0.82
CPSF1-206ENST00000531480 D6R8Y8 96 aa9.89□□□□□ -0.83
CPSF1-206ENST00000531480 KIAA1644Q3SXP7 199 aa9.89□□□□□ -0.83
CPSF1-206ENST00000531480 COA6Q5JTJ3 125 aaKnown RBP9.89□□□□□ -0.83
CPSF1-206ENST00000531480 LELP1Q5T871 98 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms