RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	LINC01560	Q8TB33	94 aa		3.98	□□□□□ -1.77
CD44-231	ENST00000531110	ITLN1	Q8WWA0	313 aa		3.98	□□□□□ -1.77
CD44-231	ENST00000531110	TTTY13	Q9BZ97	58 aa		3.98	□□□□□ -1.77
CD44-231	ENST00000531110	POLE	Q07864	2286 aa		3.97	□□□□□ -1.77
CD44-231	ENST00000531110	TRAV8-3	A0A0A6YYJ7	113 aa		3.97	□□□□□ -1.77
CD44-231	ENST00000531110		H0Y9J4	135 aa		3.97	□□□□□ -1.77
CD44-231	ENST00000531110	COX7A2L	O14548	114 aa		3.97	□□□□□ -1.77
CD44-231	ENST00000531110	IGHV3-13	P01766	116 aa		3.97	□□□□□ -1.77
CD44-231	ENST00000531110	SAA1	P0DJI8	122 aa	Predicted RBP	3.97	□□□□□ -1.77
CD44-231	ENST00000531110	IMMP1L	Q96LU5	166 aa		3.97	□□□□□ -1.77
CD44-231	ENST00000531110	PHLDA3	Q9Y5J5	127 aa		3.97	□□□□□ -1.77
CD44-231	ENST00000531110	DYSF	O75923	2080 aa		3.96	□□□□□ -1.77
CD44-231	ENST00000531110	IGKV1D-17	A0A075B6S4	117 aa		3.96	□□□□□ -1.78
CD44-231	ENST00000531110	IGIP	A6NJ69	53 aa		3.96	□□□□□ -1.78
CD44-231	ENST00000531110		A6NN06	94 aa		3.96	□□□□□ -1.78
CD44-231	ENST00000531110		M0R381	172 aa		3.96	□□□□□ -1.78
CD44-231	ENST00000531110	DNAL4	O96015	105 aa		3.96	□□□□□ -1.78
CD44-231	ENST00000531110	IGHV3-9	P01782	118 aa		3.96	□□□□□ -1.78
CD44-231	ENST00000531110	ARMS2	P0C7Q2	107 aa		3.96	□□□□□ -1.78
CD44-231	ENST00000531110	CD70	P32970	193 aa		3.96	□□□□□ -1.78
CD44-231	ENST00000531110	MIR17HG	Q75NE6	70 aa		3.96	□□□□□ -1.78
CD44-231	ENST00000531110	LINC00474	Q9P2X8	69 aa		3.96	□□□□□ -1.78
CD44-231	ENST00000531110	MYOF	Q9NZM1	2061 aa		3.96	□□□□□ -1.78
CD44-231	ENST00000531110	GON4L	Q3T8J9	2241 aa		3.95	□□□□□ -1.78
CD44-231	ENST00000531110	IGKV1-6	A0A0C4DH72	117 aa		3.95	□□□□□ -1.78
CD44-231	ENST00000531110		F8WEM9	126 aa		3.95	□□□□□ -1.78
CD44-231	ENST00000531110	SOCS3	O14543	225 aa		3.95	□□□□□ -1.78
CD44-231	ENST00000531110	S100A4	P26447	101 aa	Known RBP	3.95	□□□□□ -1.78
CD44-231	ENST00000531110	ZNF137P	P52743	207 aa		3.95	□□□□□ -1.78
CD44-231	ENST00000531110		Q1RN00	199 aa		3.95	□□□□□ -1.78
CD44-231	ENST00000531110	SPANXN1	Q5VSR9	72 aa		3.95	□□□□□ -1.78
CD44-231	ENST00000531110	KRTAP5-11	Q6L8G4	156 aa		3.95	□□□□□ -1.78
CD44-231	ENST00000531110		Q86TA4	180 aa		3.95	□□□□□ -1.78
CD44-231	ENST00000531110	TMEM141	Q96I45	108 aa		3.95	□□□□□ -1.78
CD44-231	ENST00000531110	AMELX	Q99217	191 aa		3.95	□□□□□ -1.78
CD44-231	ENST00000531110	TMEM14C	Q9P0S9	112 aa		3.95	□□□□□ -1.78
CD44-231	ENST00000531110	C17orf98	A8MV24	154 aa		3.94	□□□□□ -1.78
CD44-231	ENST00000531110		F6UB75	175 aa		3.94	□□□□□ -1.78
CD44-231	ENST00000531110	PSPHP1	O15172	72 aa		3.94	□□□□□ -1.78
CD44-231	ENST00000531110	LEPROT	O15243	131 aa		3.94	□□□□□ -1.78
CD44-231	ENST00000531110	RPS27	P42677	84 aa	Known RBP	3.94	□□□□□ -1.78
CD44-231	ENST00000531110	MP68	P56378	58 aa		3.94	□□□□□ -1.78
CD44-231	ENST00000531110	KRTAP10-12	P60413	245 aa		3.94	□□□□□ -1.78
CD44-231	ENST00000531110	CIRBP	Q14011	172 aa	Known RBP	3.94	□□□□□ -1.78
CD44-231	ENST00000531110	NSUN5P1	Q3KNT7	163 aa		3.94	□□□□□ -1.78
CD44-231	ENST00000531110	FBXL19-AS1	Q494R0	122 aa		3.94	□□□□□ -1.78
CD44-231	ENST00000531110	C2orf83	Q53S99	150 aa		3.94	□□□□□ -1.78
CD44-231	ENST00000531110	CCL4L1	Q8NHW4	92 aa		3.94	□□□□□ -1.78
CD44-231	ENST00000531110	LIMD2	Q9BT23	127 aa		3.94	□□□□□ -1.78
CD44-231	ENST00000531110	PROK2	Q9HC23	129 aa		3.94	□□□□□ -1.78
CD44-231	ENST00000531110	TRBV7-4	A0A0J9YYF1	115 aa		3.93	□□□□□ -1.78
CD44-231	ENST00000531110	hDV103S1	A0JD37	113 aa		3.93	□□□□□ -1.78
CD44-231	ENST00000531110		E7EUB6	86 aa		3.93	□□□□□ -1.78
CD44-231	ENST00000531110	JMJD7-PLA2G4B	H0Y9G9	81 aa		3.93	□□□□□ -1.78
CD44-231	ENST00000531110		H3BSH0	61 aa		3.93	□□□□□ -1.78
CD44-231	ENST00000531110	FUS	P35637	526 aa	Known RBP eCLIP	3.93	□□□□□ -1.78
CD44-231	ENST00000531110	PRR3	P79522	188 aa	Known RBP	3.93	□□□□□ -1.78
CD44-231	ENST00000531110	CLLU1OS	Q5K130	101 aa		3.93	□□□□□ -1.78
CD44-231	ENST00000531110	FAM218A	Q96MZ4	157 aa		3.93	□□□□□ -1.78
CD44-231	ENST00000531110	SPACA5	Q96QH8	159 aa		3.93	□□□□□ -1.78
CD44-231	ENST00000531110	COL4A1	P02462	1669 aa		3.93	□□□□□ -1.78
CD44-231	ENST00000531110		K7EQD1	137 aa		3.92	□□□□□ -1.78
CD44-231	ENST00000531110	CCL24	O00175	119 aa		3.92	□□□□□ -1.78
CD44-231	ENST00000531110	GNRH2	O43555	120 aa		3.92	□□□□□ -1.78
CD44-231	ENST00000531110	NDUFA3	O95167	84 aa		3.92	□□□□□ -1.78
CD44-231	ENST00000531110	DEFA4	P12838	97 aa		3.92	□□□□□ -1.78
CD44-231	ENST00000531110	RNASE4	P34096	147 aa	Known RBP	3.92	□□□□□ -1.78
CD44-231	ENST00000531110	SYCN	Q0VAF6	134 aa		3.92	□□□□□ -1.78
CD44-231	ENST00000531110	LINC01554	Q52M75	96 aa		3.92	□□□□□ -1.78
CD44-231	ENST00000531110	LINC00322	Q6ZN03	302 aa	Predicted RBP	3.92	□□□□□ -1.78
CD44-231	ENST00000531110	ZNF833P	Q6ZTB9	187 aa		3.92	□□□□□ -1.78
CD44-231	ENST00000531110	TMEM61	Q8N0U2	210 aa		3.92	□□□□□ -1.78
CD44-231	ENST00000531110	RNF185	Q96GF1	192 aa		3.92	□□□□□ -1.78
CD44-231	ENST00000531110	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	3.92	□□□□□ -1.78
CD44-231	ENST00000531110	CACNA1C	Q13936	2221 aa		3.92	□□□□□ -1.78
CD44-231	ENST00000531110	SPTB	P11277	2137 aa		3.92	□□□□□ -1.78
CD44-231	ENST00000531110	ABCA7	Q8IZY2	2146 aa		3.92	□□□□□ -1.78
CD44-231	ENST00000531110	IGKV3D-20	A0A0C4DH25	116 aa		3.91	□□□□□ -1.78
CD44-231	ENST00000531110	IGHV5-10-1	A0A0J9YXX1	117 aa		3.91	□□□□□ -1.78
CD44-231	ENST00000531110	LOC389332	A0A1B0GUA5	103 aa		3.91	□□□□□ -1.78
CD44-231	ENST00000531110	EPOP	A6NHQ4	379 aa		3.91	□□□□□ -1.78
CD44-231	ENST00000531110	CYSRT1	A8MQ03	144 aa		3.91	□□□□□ -1.78
CD44-231	ENST00000531110	C4orf51	C9J302	202 aa		3.91	□□□□□ -1.78
CD44-231	ENST00000531110		I3L3M4	83 aa		3.91	□□□□□ -1.78
CD44-231	ENST00000531110	BAALC-AS2	P0C853	105 aa		3.91	□□□□□ -1.78
CD44-231	ENST00000531110	IGLV3-21	P80748	117 aa	Predicted RBP	3.91	□□□□□ -1.78
CD44-231	ENST00000531110	C10orf128	Q5T292	105 aa		3.91	□□□□□ -1.78
CD44-231	ENST00000531110	ATP1A1-AS1	Q5TC04	95 aa		3.91	□□□□□ -1.78
CD44-231	ENST00000531110	C10orf113	Q5VZT2	155 aa		3.91	□□□□□ -1.78
CD44-231	ENST00000531110	MUSTN1	Q8IVN3	82 aa		3.91	□□□□□ -1.78
CD44-231	ENST00000531110		Q9HAA7	133 aa		3.91	□□□□□ -1.78
CD44-231	ENST00000531110	IGHV1-45	A0A0A0MS14	117 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	IGKV1D-43	A0A0B4J1Z2	117 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	IGHV1OR15-9	A0A0B4J2B8	117 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	IGKV1-12	A0A0C4DH73	117 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110		A0A1W2PPR1	153 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	PCNX2	A6NKB5	2137 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110		H0YGX0	51 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110		H3BQ85	93 aa		3.9	□□□□□ -1.79
CD44-231	ENST00000531110	BUB1B-PAK6	H3BSN5	160 aa		3.9	□□□□□ -1.79

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