RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 C15orf53Q8NAA6 179 aa9.54□□□□□ -0.88
CD44-224ENST00000526669 NEXN-AS1Q8NBZ9 246 aa9.54□□□□□ -0.88
CD44-224ENST00000526669 RPL39LQ96EH5 51 aaKnown RBP9.54□□□□□ -0.88
CD44-224ENST00000526669 M0QY20 66 aa9.53□□□□□ -0.88
CD44-224ENST00000526669 SRIP30626 198 aa9.53□□□□□ -0.88
CD44-224ENST00000526669 TMEM136Q6ZRR5 245 aa9.53□□□□□ -0.88
CD44-224ENST00000526669 ZNRF2Q8NHG8 242 aa9.53□□□□□ -0.88
CD44-224ENST00000526669 SMCO4Q9NRQ5 59 aa9.53□□□□□ -0.88
CD44-224ENST00000526669 H3BNG1 76 aa9.52□□□□□ -0.89
CD44-224ENST00000526669 H7C1H1 209 aa9.52□□□□□ -0.89
CD44-224ENST00000526669 MRPL23Q16540 153 aaKnown RBP9.52□□□□□ -0.89
CD44-224ENST00000526669 RASL11AQ6T310 242 aa9.52□□□□□ -0.89
CD44-224ENST00000526669 IGHV3-38A0A0C4DH36 116 aa9.51□□□□□ -0.89
CD44-224ENST00000526669 S100A1P23297 94 aa9.51□□□□□ -0.89
CD44-224ENST00000526669 RPL36AP83881 106 aaKnown RBP9.51□□□□□ -0.89
CD44-224ENST00000526669 RPL36ALQ969Q0 106 aaKnown RBP9.51□□□□□ -0.89
CD44-224ENST00000526669 YPEL4Q96NS1 127 aa9.51□□□□□ -0.89
CD44-224ENST00000526669 TRBV10-1A0A0K0K1A3 114 aa9.5□□□□□ -0.89
CD44-224ENST00000526669 D6R8Y8 96 aa9.5□□□□□ -0.89
CD44-224ENST00000526669 LINC00694P0DN24 101 aa9.5□□□□□ -0.89
CD44-224ENST00000526669 RPS10P46783 165 aaKnown RBP9.5□□□□□ -0.89
CD44-224ENST00000526669 OR10J3Q5JRS4 329 aa9.5□□□□□ -0.89
CD44-224ENST00000526669 DEFB104AQ8WTQ1 72 aa9.5□□□□□ -0.89
CD44-224ENST00000526669 MRAP2Q96G30 205 aa9.5□□□□□ -0.89
CD44-224ENST00000526669 SACSQ9NZJ4 4579 aa9.49□□□□□ -0.89
CD44-224ENST00000526669 TRBV7-3A0A075B6L6 115 aa9.49□□□□□ -0.89
CD44-224ENST00000526669 TRBV24-1A0A075B6N3 115 aa9.49□□□□□ -0.89
CD44-224ENST00000526669 CKS2P33552 79 aa9.49□□□□□ -0.89
CD44-224ENST00000526669 KIAA1644Q3SXP7 199 aa9.49□□□□□ -0.89
CD44-224ENST00000526669 NEGR1Q7Z3B1 354 aa9.49□□□□□ -0.89
CD44-224ENST00000526669 ATP6V0E2Q8NHE4 81 aa9.49□□□□□ -0.89
CD44-224ENST00000526669 NIT2Q9NQR4 276 aa9.49□□□□□ -0.89
CD44-224ENST00000526669 TNFRSF18Q9Y5U5 241 aa9.49□□□□□ -0.89
CD44-224ENST00000526669 HLA-DQA1P01909 254 aa9.48□□□□□ -0.89
CD44-224ENST00000526669 TCTAP57738 103 aa9.48□□□□□ -0.89
CD44-224ENST00000526669 UBE2D3P61077 147 aa9.48□□□□□ -0.89
CD44-224ENST00000526669 UBE2D2P62837 147 aa9.48□□□□□ -0.89
CD44-224ENST00000526669 ESRGQ1W209 222 aa9.48□□□□□ -0.89
CD44-224ENST00000526669 UBE2DNLQ8IWF7 75 aa9.48□□□□□ -0.89
CD44-224ENST00000526669 FRZBQ92765 325 aa9.48□□□□□ -0.89
CD44-224ENST00000526669 MRPL18Q9H0U6 180 aaKnown RBP9.48□□□□□ -0.89
CD44-224ENST00000526669 NPYP01303 97 aa9.47□□□□□ -0.89
CD44-224ENST00000526669 APCSP02743 223 aa9.47□□□□□ -0.89
CD44-224ENST00000526669 COX19Q49B96 90 aa9.47□□□□□ -0.89
CD44-224ENST00000526669 NRACQ8N912 160 aa9.47□□□□□ -0.89
CD44-224ENST00000526669 DNAJC30Q96LL9 226 aa9.47□□□□□ -0.89
CD44-224ENST00000526669 GNB1LQ9BYB4 327 aa9.47□□□□□ -0.89
CD44-224ENST00000526669 FABP9Q0Z7S8 132 aa9.46□□□□□ -0.9
CD44-224ENST00000526669 LYPD5Q6UWN5 251 aa9.46□□□□□ -0.9
CD44-224ENST00000526669 ORMDL3Q8N138 153 aa9.46□□□□□ -0.9
CD44-224ENST00000526669 PRELID3AQ96N28 172 aa9.46□□□□□ -0.9
CD44-224ENST00000526669 ST20Q9HBF5 79 aa9.46□□□□□ -0.9
CD44-224ENST00000526669 LINC00588Q9Y4M8 146 aa9.46□□□□□ -0.9
CD44-224ENST00000526669 TRAPPC1Q9Y5R8 145 aa9.46□□□□□ -0.9
CD44-224ENST00000526669 SDHAF1A6NFY7 115 aa9.45□□□□□ -0.9
CD44-224ENST00000526669 TNFRSF6BO95407 300 aa9.45□□□□□ -0.9
CD44-224ENST00000526669 MT-ND6P03923 174 aa9.45□□□□□ -0.9
CD44-224ENST00000526669 CCL18P55774 89 aa9.45□□□□□ -0.9
CD44-224ENST00000526669 SH2D6Q7Z4S9 175 aa9.45□□□□□ -0.9
CD44-224ENST00000526669 GTSF1LQ9H1H1 148 aa9.45□□□□□ -0.9
CD44-224ENST00000526669 LY6G6CO95867 125 aa9.44□□□□□ -0.9
CD44-224ENST00000526669 KMT2AQ03164 3969 aa9.44□□□□□ -0.9
CD44-224ENST00000526669 TRBV6-5A0A0K0K1A5 114 aa9.43□□□□□ -0.9
CD44-224ENST00000526669 COLCA2A8K830 154 aa9.43□□□□□ -0.9
CD44-224ENST00000526669 PPBPP02775 128 aa9.43□□□□□ -0.9
CD44-224ENST00000526669 LINC00476Q8WZB0 136 aa9.43□□□□□ -0.9
CD44-224ENST00000526669 TMEM70Q9BUB7 260 aa9.43□□□□□ -0.9
CD44-224ENST00000526669 LOC389332A0A1B0GUA5 103 aa9.42□□□□□ -0.9
CD44-224ENST00000526669 PMCHP20382 165 aa9.42□□□□□ -0.9
CD44-224ENST00000526669 POLR2KP53803 58 aaKnown RBP9.42□□□□□ -0.9
CD44-224ENST00000526669 SUMO2P61956 95 aaKnown RBP9.42□□□□□ -0.9
CD44-224ENST00000526669 DAZ4Q86SG3 579 aaKnown RBP9.42□□□□□ -0.9
CD44-224ENST00000526669 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.42□□□□□ -0.9
CD44-224ENST00000526669 DAZ3Q9NR90 486 aaKnown RBP9.42□□□□□ -0.9
CD44-224ENST00000526669 MRPS16Q9Y3D3 137 aaKnown RBP9.42□□□□□ -0.9
CD44-224ENST00000526669 PPP1R17O96001 155 aa9.41□□□□□ -0.9
CD44-224ENST00000526669 LELP1Q5T871 98 aa9.41□□□□□ -0.9
CD44-224ENST00000526669 LGALS9CQ6DKI2 356 aa9.41□□□□□ -0.9
CD44-224ENST00000526669 NTM-AS1Q6ZSK4 140 aa9.41□□□□□ -0.9
CD44-224ENST00000526669 WFDC10BQ8IUB3 73 aa9.41□□□□□ -0.9
CD44-224ENST00000526669 I3L3M4 83 aa9.4□□□□□ -0.9
CD44-224ENST00000526669 RAB5AP20339 215 aa9.4□□□□□ -0.9
CD44-224ENST00000526669 TIRAPP58753 221 aa9.4□□□□□ -0.9
CD44-224ENST00000526669 COTL1Q14019 142 aa9.4□□□□□ -0.9
CD44-224ENST00000526669 ALKBH7Q9BT30 221 aaPredicted RBP9.4□□□□□ -0.9
CD44-224ENST00000526669 SMIM2Q9BVW6 85 aa9.4□□□□□ -0.9
CD44-224ENST00000526669 MAP1LC3AQ9H492 121 aa9.4□□□□□ -0.9
CD44-224ENST00000526669 HYDINQ4G0P3 5121 aa9.39□□□□□ -0.91
CD44-224ENST00000526669 IGLV2-18A0A075B6J9 118 aa9.39□□□□□ -0.91
CD44-224ENST00000526669 TRBV6-8A0A0A6YYG3 113 aa9.39□□□□□ -0.91
CD44-224ENST00000526669 PHOX2AO14813 284 aa9.39□□□□□ -0.91
CD44-224ENST00000526669 TSHBP01222 138 aa9.39□□□□□ -0.91
CD44-224ENST00000526669 TRGC2P03986 189 aa9.39□□□□□ -0.91
CD44-224ENST00000526669 IQCJQ1A5X6 159 aa9.39□□□□□ -0.91
CD44-224ENST00000526669 C20orf78Q9BR46 151 aa9.39□□□□□ -0.91
CD44-224ENST00000526669 TRBV25-1A0A075B6N4 114 aa9.38□□□□□ -0.91
CD44-224ENST00000526669 TRAV8-6A0A0B4J262 113 aa9.38□□□□□ -0.91
CD44-224ENST00000526669 IGHV1-24A0A0C4DH33 117 aa9.38□□□□□ -0.91
CD44-224ENST00000526669 VCYO14598 125 aa9.38□□□□□ -0.91
CD44-224ENST00000526669 AMTP48728 403 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 99.4 ms