RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 COX19Q49B96 90 aa11.32□□□□□ -0.6
LSM1-204ENST00000522515 GAGE13Q4V321 117 aa11.32□□□□□ -0.6
LSM1-204ENST00000522515 RPL39LQ96EH5 51 aaKnown RBP11.32□□□□□ -0.6
LSM1-204ENST00000522515 MRAP2Q96G30 205 aa11.32□□□□□ -0.6
LSM1-204ENST00000522515 A0A096LPF7 62 aa11.31□□□□□ -0.6
LSM1-204ENST00000522515 COLCA2A8K830 154 aa11.31□□□□□ -0.6
LSM1-204ENST00000522515 C3orf84H3BNL1 204 aa11.31□□□□□ -0.6
LSM1-204ENST00000522515 RPS10P46783 165 aaKnown RBP11.31□□□□□ -0.6
LSM1-204ENST00000522515 CASC10Q5T4H9 136 aa11.31□□□□□ -0.6
LSM1-204ENST00000522515 C15orf53Q8NAA6 179 aa11.31□□□□□ -0.6
LSM1-204ENST00000522515 ZNRF2Q8NHG8 242 aa11.31□□□□□ -0.6
LSM1-204ENST00000522515 NIT2Q9NQR4 276 aa11.31□□□□□ -0.6
LSM1-204ENST00000522515 APLNQ9ULZ1 77 aa11.31□□□□□ -0.6
LSM1-204ENST00000522515 ICOSQ9Y6W8 199 aa11.31□□□□□ -0.6
LSM1-204ENST00000522515 STARD9Q9P2P6 4700 aa11.31□□□□□ -0.6
LSM1-204ENST00000522515 D6R8Y8 96 aa11.3□□□□□ -0.6
LSM1-204ENST00000522515 MT-ND6P03923 174 aa11.3□□□□□ -0.6
LSM1-204ENST00000522515 CKS2P33552 79 aa11.3□□□□□ -0.6
LSM1-204ENST00000522515 MRPL23Q16540 153 aaKnown RBP11.3□□□□□ -0.6
LSM1-204ENST00000522515 DYNC2H1Q8NCM8 4307 aaKnown RBP11.3□□□□□ -0.6
LSM1-204ENST00000522515 TRBV7-3A0A075B6L6 115 aa11.29□□□□□ -0.6
LSM1-204ENST00000522515 APCSP02743 223 aa11.29□□□□□ -0.6
LSM1-204ENST00000522515 LINC00694P0DN24 101 aa11.29□□□□□ -0.6
LSM1-204ENST00000522515 SRIP30626 198 aa11.29□□□□□ -0.6
LSM1-204ENST00000522515 RPL36AP83881 106 aaKnown RBP11.29□□□□□ -0.6
LSM1-204ENST00000522515 RPL36ALQ969Q0 106 aaKnown RBP11.29□□□□□ -0.6
LSM1-204ENST00000522515 MRPL18Q9H0U6 180 aaKnown RBP11.29□□□□□ -0.6
LSM1-204ENST00000522515 KIAA1644Q3SXP7 199 aa11.28□□□□□ -0.6
LSM1-204ENST00000522515 OR10J3Q5JRS4 329 aa11.28□□□□□ -0.6
LSM1-204ENST00000522515 NRACQ8N912 160 aa11.28□□□□□ -0.6
LSM1-204ENST00000522515 TRAPPC1Q9Y5R8 145 aa11.28□□□□□ -0.6
LSM1-204ENST00000522515 TNFRSF18Q9Y5U5 241 aa11.28□□□□□ -0.6
LSM1-204ENST00000522515 UBE2D3P61077 147 aa11.28□□□□□ -0.6
LSM1-204ENST00000522515 UBE2D2P62837 147 aa11.28□□□□□ -0.6
LSM1-204ENST00000522515 ORMDL3Q8N138 153 aa11.28□□□□□ -0.6
LSM1-204ENST00000522515 DNAJC30Q96LL9 226 aa11.28□□□□□ -0.6
LSM1-204ENST00000522515 PPBPP02775 128 aa11.27□□□□□ -0.61
LSM1-204ENST00000522515 TCTAP57738 103 aa11.27□□□□□ -0.61
LSM1-204ENST00000522515 FABP9Q0Z7S8 132 aa11.27□□□□□ -0.61
LSM1-204ENST00000522515 NEGR1Q7Z3B1 354 aa11.27□□□□□ -0.61
LSM1-204ENST00000522515 TRBV6-5A0A0K0K1A5 114 aa11.26□□□□□ -0.61
LSM1-204ENST00000522515 ATP6V0E2Q8NHE4 81 aa11.26□□□□□ -0.61
LSM1-204ENST00000522515 PRELID3AQ96N28 172 aa11.26□□□□□ -0.61
LSM1-204ENST00000522515 TENM2Q9NT68 2774 aa11.26□□□□□ -0.61
LSM1-204ENST00000522515 TNFRSF6BO95407 300 aa11.25□□□□□ -0.61
LSM1-204ENST00000522515 NPYP01303 97 aa11.25□□□□□ -0.61
LSM1-204ENST00000522515 RAB5AP20339 215 aa11.25□□□□□ -0.61
LSM1-204ENST00000522515 PLECQ15149 4684 aaKnown RBP11.25□□□□□ -0.61
LSM1-204ENST00000522515 IGHV3-38A0A0C4DH36 116 aa11.24□□□□□ -0.61
LSM1-204ENST00000522515 SDHAF1A6NFY7 115 aa11.24□□□□□ -0.61
LSM1-204ENST00000522515 PPP1R17O96001 155 aa11.24□□□□□ -0.61
LSM1-204ENST00000522515 ST20Q9HBF5 79 aa11.24□□□□□ -0.61
LSM1-204ENST00000522515 ESRGQ1W209 222 aa11.24□□□□□ -0.61
LSM1-204ENST00000522515 SH2D6Q7Z4S9 175 aa11.24□□□□□ -0.61
LSM1-204ENST00000522515 POLR2KP53803 58 aaKnown RBP11.23□□□□□ -0.61
LSM1-204ENST00000522515 SUMO2P61956 95 aaKnown RBP11.23□□□□□ -0.61
LSM1-204ENST00000522515 LYPD5Q6UWN5 251 aa11.23□□□□□ -0.61
LSM1-204ENST00000522515 DEFB104AQ8WTQ1 72 aa11.23□□□□□ -0.61
LSM1-204ENST00000522515 TMEM70Q9BUB7 260 aa11.23□□□□□ -0.61
LSM1-204ENST00000522515 PHOX2AO14813 284 aa11.22□□□□□ -0.61
LSM1-204ENST00000522515 TRGC2P03986 189 aa11.22□□□□□ -0.61
LSM1-204ENST00000522515 DAZ4Q86SG3 579 aaKnown RBP11.22□□□□□ -0.61
LSM1-204ENST00000522515 C20orf78Q9BR46 151 aa11.22□□□□□ -0.61
LSM1-204ENST00000522515 ALKBH7Q9BT30 221 aaPredicted RBP11.22□□□□□ -0.61
LSM1-204ENST00000522515 GTSF1LQ9H1H1 148 aa11.22□□□□□ -0.61
LSM1-204ENST00000522515 DAZ3Q9NR90 486 aaKnown RBP11.22□□□□□ -0.61
LSM1-204ENST00000522515 LAMTOR2Q9Y2Q5 125 aa11.22□□□□□ -0.61
LSM1-204ENST00000522515 TRBV27A0A0K0K1C4 114 aa11.2□□□□□ -0.62
LSM1-204ENST00000522515 NTM-AS1Q6ZSK4 140 aa11.2□□□□□ -0.62
LSM1-204ENST00000522515 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.2□□□□□ -0.62
LSM1-204ENST00000522515 LINC00588Q9Y4M8 146 aa11.2□□□□□ -0.62
LSM1-204ENST00000522515 LOC389332A0A1B0GUA5 103 aa11.19□□□□□ -0.62
LSM1-204ENST00000522515 I3L3M4 83 aa11.19□□□□□ -0.62
LSM1-204ENST00000522515 VCYO14598 125 aa11.19□□□□□ -0.62
LSM1-204ENST00000522515 PMCHP20382 165 aa11.19□□□□□ -0.62
LSM1-204ENST00000522515 CCL18P55774 89 aa11.19□□□□□ -0.62
LSM1-204ENST00000522515 TIRAPP58753 221 aa11.19□□□□□ -0.62
LSM1-204ENST00000522515 SMIM2Q9BVW6 85 aa11.19□□□□□ -0.62
LSM1-204ENST00000522515 MAP1LC3AQ9H492 121 aa11.19□□□□□ -0.62
LSM1-204ENST00000522515 PRSS47A8MTI9 375 aa11.18□□□□□ -0.62
LSM1-204ENST00000522515 RPL32P62910 135 aaKnown RBP11.18□□□□□ -0.62
LSM1-204ENST00000522515 TRBV6-8A0A0A6YYG3 113 aa11.17□□□□□ -0.62
LSM1-204ENST00000522515 COTL1Q14019 142 aa11.17□□□□□ -0.62
LSM1-204ENST00000522515 IGLV2-18A0A075B6J9 118 aa11.16□□□□□ -0.62
LSM1-204ENST00000522515 TSHBP01222 138 aa11.16□□□□□ -0.62
LSM1-204ENST00000522515 LELP1Q5T871 98 aa11.16□□□□□ -0.62
LSM1-204ENST00000522515 LYSTQ99698 3801 aa11.16□□□□□ -0.62
LSM1-204ENST00000522515 IQCJQ1A5X6 159 aa11.16□□□□□ -0.62
LSM1-204ENST00000522515 TMEM97Q5BJF2 176 aa11.16□□□□□ -0.62
LSM1-204ENST00000522515 UBE2DNLQ8IWF7 75 aa11.16□□□□□ -0.62
LSM1-204ENST00000522515 C18orf32Q8TCD1 76 aa11.16□□□□□ -0.62
LSM1-204ENST00000522515 MRPS16Q9Y3D3 137 aaKnown RBP11.16□□□□□ -0.62
LSM1-204ENST00000522515 IFI27P40305 119 aaPredicted RBP11.15□□□□□ -0.62
LSM1-204ENST00000522515 KIR2DL4Q99706 377 aa11.15□□□□□ -0.62
LSM1-204ENST00000522515 TCAPO15273 167 aa11.14□□□□□ -0.63
LSM1-204ENST00000522515 LGALS9CQ6DKI2 356 aa11.14□□□□□ -0.63
LSM1-204ENST00000522515 WFDC10BQ8IUB3 73 aa11.14□□□□□ -0.63
LSM1-204ENST00000522515 Q8N8P6 123 aa11.14□□□□□ -0.63
LSM1-204ENST00000522515 TRBV25-1A0A075B6N4 114 aa11.13□□□□□ -0.63
LSM1-204ENST00000522515 IGHV1-24A0A0C4DH33 117 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms